Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01489
(809 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [... 33 0.71
sp|Q5ZHP7|EAF2_CHICK ELL-associated factor 2 33 1.2
sp|P03819|KEFC_ECOLI Glutathione-regulated potassium-efflux... 31 3.5
sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19... 31 3.5
sp|Q10435|YDE1_SCHPO Probable ubiquitin fusion degradation ... 31 4.6
sp|Q6PCP7|GP156_MOUSE Probable G-protein coupled receptor 1... 30 6.0
>sp|Q9NZW4|DSPP_HUMAN Dentin sialophosphoprotein precursor [Contains: Dentin phosphoprotein
(Dentin phosphophoryn) (DPP); Dentin sialoprotein (DSP)]
Length = 1253
Score = 33.5 bits (75), Expect = 0.71
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = +3
Query: 210 NSVSCQKYKSGCNSENEFFTNHSTSPNQHKTSLSSNSSDENDHQSSDPSD 359
NS S S +S++ +N S S N +S SS+SSD N SSD S+
Sbjct: 935 NSNSSDSSNSSDSSDSSDSSNSSDSSNSGDSSNSSDSSDSNSSDSSDSSN 984
Score = 31.6 bits (70), Expect = 2.7
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +3
Query: 210 NSVSCQKYKSGCNSENEFFTNHSTSPNQHKTSLSSNSSDENDHQSSDPSDKD 365
+S S S +S++ +N S S + +S SSNSSD +D SSD SD D
Sbjct: 770 SSDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSD--SSDSSDSD 819
Score = 31.6 bits (70), Expect = 2.7
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 171 NTKSPWAEMVRKTNSVSCQKYKSGCNSENEFFTNHSTSPNQHKTSLSSNSSDEND-HQSS 347
+ S ++ ++S + +S + +N S S N +S SSNSSD +D SS
Sbjct: 789 SNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSDSSDSSDSS 848
Query: 348 DPSDKD 365
D SD D
Sbjct: 849 DSSDSD 854
Score = 31.2 bits (69), Expect = 3.5
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +3
Query: 210 NSVSCQKYKSGCNSENEFFTNHSTSPNQHKTSLSSNSSDENDHQSSDPSD 359
+S S S +S++ ++ S S + +S SS+SSD +D SSD SD
Sbjct: 674 SSDSSSSSDSSSSSDSSNSSDSSDSSDSSNSSESSDSSDSSDSDSSDSSD 723
>sp|Q5ZHP7|EAF2_CHICK ELL-associated factor 2
Length = 264
Score = 32.7 bits (73), Expect = 1.2
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = +3
Query: 276 STSPNQHKTSLSSNSSDENDHQSSDPSDKDLETLISWTKNYLENKPGLSGV 428
S S + K+S SS+SS EN SSD D++ + + YL+ +P LS +
Sbjct: 175 SDSSSDSKSSSSSSSSSENS--SSDSEDEEARPSLPMSMPYLQPQPTLSAI 223
>sp|P03819|KEFC_ECOLI Glutathione-regulated potassium-efflux system protein kefC
(K(+)/H(+) antiporter)
Length = 620
Score = 31.2 bits (69), Expect = 3.5
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = -1
Query: 182 RFGVFGCGMQSIVICGASSGSICRRSSLRRG*IVLVYSLRIDSEYLMMMMCINRR 18
R VFGCG +VICG G C LR L+ S + M +N R
Sbjct: 83 RAAVFGCGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNER 137
>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 (WRKY DNA-binding protein 19)
Length = 1895
Score = 31.2 bits (69), Expect = 3.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 17 TVY*CTSSSSGTRCQFAGCTQGQFIPSSENSSDRC 121
TVY C + G RC++ GCT+G +E S+D C
Sbjct: 131 TVY-CKAHGGGRRCEYLGCTKG-----AEGSTDFC 159
>sp|Q10435|YDE1_SCHPO Probable ubiquitin fusion degradation protein C12B10.01c
Length = 1647
Score = 30.8 bits (68), Expect = 4.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 249 SENEFFTNHSTSPNQHKTSLSSNSSDENDHQSSDPSD 359
+ N + T +S S N H ++ SS +D++DH D +D
Sbjct: 185 NSNSYETTYSDSSNYHTSTDSSQYNDQDDHVYDDTND 221
>sp|Q6PCP7|GP156_MOUSE Probable G-protein coupled receptor 156 (GABAB-related G-protein
coupled receptor)
Length = 798
Score = 30.4 bits (67), Expect = 6.0
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 10/87 (11%)
Frame = +3
Query: 183 PWAEMVRKTNSVSCQKYKSGC-------NSENEFFTNHSTSPNQHKTSLSSNSSDENDHQ 341
P R S C SGC +S +EFF + +S D ND
Sbjct: 705 PRQRQPRPRLSPGCPSLSSGCYNLDSESSSSDEFFCR---CHRPYCEICFQSSLDSND-- 759
Query: 342 SSDPSDKDLET---LISWTKNYLENKP 413
SD SD DLE L SW K + +KP
Sbjct: 760 -SDTSDSDLEQASGLASWEKLWARSKP 785
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,406,547
Number of Sequences: 369166
Number of extensions: 1257684
Number of successful extensions: 4088
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4067
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7715018400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)