Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01488
(643 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P58480|HTPG_SALTY Chaperone protein htpG (Heat shock pro... 31 3.1
sp|P58479|HTPG_SALTI Chaperone protein htpG (Heat shock pro... 31 3.1
sp|Q9V9K7|ARS2_DROME Arsenite-resistance protein 2 homolog 29 9.0
sp|P75917|YMDA_ECOLI Hypothetical protein ymdA precursor 29 9.0
>sp|P58480|HTPG_SALTY Chaperone protein htpG (Heat shock protein htpG) (High temperature
protein G)
Length = 624
Score = 30.8 bits (68), Expect = 3.1
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 260 ELPHKWHCAIVMLIGRMANSITNNDNIEYLAEPDGKRTYFLARIDFRVYLIL--IYEEHK 433
EL K +++L R+ + N YL E DGK +A+ D + + + E K
Sbjct: 448 ELLRKKGIEVLLLSDRIDEWMMN-----YLTEFDGKAFQSVAKADESIEKLADEVDENAK 502
Query: 434 EKEKPILSFIENVKTDLNGK 493
E EK + F+E VKT L +
Sbjct: 503 EAEKALEPFVERVKTLLGDR 522
>sp|P58479|HTPG_SALTI Chaperone protein htpG (Heat shock protein htpG) (High temperature
protein G)
Length = 624
Score = 30.8 bits (68), Expect = 3.1
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Frame = +2
Query: 260 ELPHKWHCAIVMLIGRMANSITNNDNIEYLAEPDGKRTYFLARIDFRVYLIL--IYEEHK 433
EL K +++L R+ + N YL E DGK +A+ D + + + E K
Sbjct: 448 ELLRKKGIEVLLLSDRIDEWMMN-----YLTEFDGKAFQSVAKADESIEKLADEVDENAK 502
Query: 434 EKEKPILSFIENVKTDLNGK 493
E EK + F+E VKT L +
Sbjct: 503 EAEKALEPFVERVKTLLGDR 522
>sp|Q9V9K7|ARS2_DROME Arsenite-resistance protein 2 homolog
Length = 943
Score = 29.3 bits (64), Expect = 9.0
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 248 PMESELPHKWHCAIVMLIGRMANSITNNDNIEYLAEPDGKRTYFLAR 388
P E E+P++ C I+ G +TNND EY+ + K FL +
Sbjct: 731 PYEDEMPNR--CGIIHARGPPPVRVTNNDVQEYIKIYESKLQQFLTK 775
>sp|P75917|YMDA_ECOLI Hypothetical protein ymdA precursor
Length = 103
Score = 29.3 bits (64), Expect = 9.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 221 QSYPVIFSCPMESELPHKWHCAIVMLIGRMANSITNNDNIEYL 349
QS PV +CP +P K + + ++ G + N+ + ++YL
Sbjct: 47 QSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQIASVKVQYL 89
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,426,230
Number of Sequences: 369166
Number of extensions: 1310894
Number of successful extensions: 3146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3146
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5218718490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)