Planaria EST Database


DrC_01488

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01488
         (643 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P58480|HTPG_SALTY  Chaperone protein htpG (Heat shock pro...    31   3.1  
sp|P58479|HTPG_SALTI  Chaperone protein htpG (Heat shock pro...    31   3.1  
sp|Q9V9K7|ARS2_DROME  Arsenite-resistance protein 2 homolog        29   9.0  
sp|P75917|YMDA_ECOLI  Hypothetical protein ymdA precursor          29   9.0  
>sp|P58480|HTPG_SALTY Chaperone protein htpG (Heat shock protein htpG) (High temperature
           protein G)
          Length = 624

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +2

Query: 260 ELPHKWHCAIVMLIGRMANSITNNDNIEYLAEPDGKRTYFLARIDFRVYLIL--IYEEHK 433
           EL  K    +++L  R+   + N     YL E DGK    +A+ D  +  +   + E  K
Sbjct: 448 ELLRKKGIEVLLLSDRIDEWMMN-----YLTEFDGKAFQSVAKADESIEKLADEVDENAK 502

Query: 434 EKEKPILSFIENVKTDLNGK 493
           E EK +  F+E VKT L  +
Sbjct: 503 EAEKALEPFVERVKTLLGDR 522
>sp|P58479|HTPG_SALTI Chaperone protein htpG (Heat shock protein htpG) (High temperature
           protein G)
          Length = 624

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
 Frame = +2

Query: 260 ELPHKWHCAIVMLIGRMANSITNNDNIEYLAEPDGKRTYFLARIDFRVYLIL--IYEEHK 433
           EL  K    +++L  R+   + N     YL E DGK    +A+ D  +  +   + E  K
Sbjct: 448 ELLRKKGIEVLLLSDRIDEWMMN-----YLTEFDGKAFQSVAKADESIEKLADEVDENAK 502

Query: 434 EKEKPILSFIENVKTDLNGK 493
           E EK +  F+E VKT L  +
Sbjct: 503 EAEKALEPFVERVKTLLGDR 522
>sp|Q9V9K7|ARS2_DROME Arsenite-resistance protein 2 homolog
          Length = 943

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 248 PMESELPHKWHCAIVMLIGRMANSITNNDNIEYLAEPDGKRTYFLAR 388
           P E E+P++  C I+   G     +TNND  EY+   + K   FL +
Sbjct: 731 PYEDEMPNR--CGIIHARGPPPVRVTNNDVQEYIKIYESKLQQFLTK 775
>sp|P75917|YMDA_ECOLI Hypothetical protein ymdA precursor
          Length = 103

 Score = 29.3 bits (64), Expect = 9.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +2

Query: 221 QSYPVIFSCPMESELPHKWHCAIVMLIGRMANSITNNDNIEYL 349
           QS PV  +CP    +P K + +  ++ G + N+   +  ++YL
Sbjct: 47  QSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQIASVKVQYL 89
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,426,230
Number of Sequences: 369166
Number of extensions: 1310894
Number of successful extensions: 3146
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3146
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5218718490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)