Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01481
(336 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08715|HLYAP_ECOLI Hemolysin, plasmid 33 0.21
sp|Q81DT1|PRSA3_BACCR Foldase protein prsA 3 precursor 32 0.35
sp|Q81QT1|PRSA3_BACAN Foldase protein prsA 3 precursor 31 1.0
sp|Q9X291|DXS_THEMA 1-deoxy-D-xylulose-5-phosphate synthase... 30 1.7
sp|Q58014|Y597_METJA Hypothetical protein MJ0597 30 1.7
sp|P57504|MUTS_BUCAI DNA mismatch repair protein mutS 30 1.7
sp|P0A1X0|SLYB_SALTY Outer membrane lipoprotein slyB precur... 30 2.3
sp|O52191|ENO_STRTR Enolase (2-phosphoglycerate dehydratase... 30 2.3
sp|P59102|RF2_BUCAP Peptide chain release factor 2 (RF-2) 30 2.3
sp|P0A905|SLYB_ECOLI Outer membrane lipoprotein slyB precur... 29 3.0
>sp|P08715|HLYAP_ECOLI Hemolysin, plasmid
Length = 1024
Score = 33.1 bits (74), Expect = 0.21
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Frame = +1
Query: 37 GDMLGGLVKNTIG------GGILSTLANIGGNAYDSLK-----GKSKPEKVIRKTEMIKE 183
G++LGG +N IG GGILST N G A S+K K K + +E+ K
Sbjct: 125 GNILGGGAEN-IGDNLGKAGGILSTFQNFLGTALSSMKIDELIKKQKSGGNVSSSELAKA 183
Query: 184 IQNLENILLDSLEEIFRNI 240
L N L+D++ + N+
Sbjct: 184 SIELINQLVDTVASLNNNV 202
>sp|Q81DT1|PRSA3_BACCR Foldase protein prsA 3 precursor
Length = 283
Score = 32.3 bits (72), Expect = 0.35
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Frame = +1
Query: 61 KNTIGGGILSTLANIGGNAYDSLKGKSKP----EKVIRKTEMIKEIQN-------LENIL 207
K+ +G STL +G D LK K KP EK I+ T K+++N + +IL
Sbjct: 82 KDKMGENFKSTLEQLGLKNEDELKEKMKPEIAFEKAIKATVTDKDVKNNYKPEMKVSHIL 141
Query: 208 LDSLEEIFRNIKERLTAFEEY 270
+ E+ + IKE++ E++
Sbjct: 142 VKD-EKTAKEIKEKVNNGEDF 161
>sp|Q81QT1|PRSA3_BACAN Foldase protein prsA 3 precursor
Length = 283
Score = 30.8 bits (68), Expect = 1.0
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Frame = +1
Query: 61 KNTIGGGILSTLANIGGNAYDSLKGKSKP----EKVIRKTEMIKEIQN-------LENIL 207
K+ +G STL +G D LK K KP EK I+ T K++++ + +IL
Sbjct: 82 KDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHIL 141
Query: 208 LDSLEEIFRNIKERLTAFEEY 270
+ E+ + +KE++ E++
Sbjct: 142 VKD-EKTAKEVKEKVNNGEDF 161
>sp|Q9X291|DXS_THEMA 1-deoxy-D-xylulose-5-phosphate synthase
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS)
Length = 608
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Frame = +1
Query: 46 LGGLVKNTIGGGILSTLANIGGNAYDS---------LKGKSKPEKVIRKTEMIKEIQNLE 198
L +K + +S N+GG AY LKGK +KV+ KTE+ E++
Sbjct: 156 LNSKMKIILNDNGMSISPNVGGLAYHLSKLRTSPIYLKGKKVLKKVLEKTEIGFEVEEEM 215
Query: 199 NILLDSLE 222
L DSL+
Sbjct: 216 KYLRDSLK 223
>sp|Q58014|Y597_METJA Hypothetical protein MJ0597
Length = 357
Score = 30.0 bits (66), Expect = 1.7
Identities = 21/63 (33%), Positives = 33/63 (52%)
Frame = +1
Query: 73 GGGILSTLANIGGNAYDSLKGKSKPEKVIRKTEMIKEIQNLENILLDSLEEIFRNIKERL 252
G +L T +I D L GK KV+ KT I+E N+ + + +EE+ NI ER+
Sbjct: 293 GRELLGTFTDI-----DILAGK----KVLEKTPYIEEEINISSENIKRVEELRENINERI 343
Query: 253 TAF 261
++
Sbjct: 344 ESY 346
>sp|P57504|MUTS_BUCAI DNA mismatch repair protein mutS
Length = 802
Score = 30.0 bits (66), Expect = 1.7
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = +1
Query: 142 KPEKVIRKTEMIKEIQNLENILLDSLEEIFRNIKERLTAFEEYIESK 282
KP K IR +I E+ N+E LD L I N KE + FE+ + K
Sbjct: 417 KPSKCIRDGGVIAELYNIE---LDELRSIKINSKEYIKNFEQKEKKK 460
>sp|P0A1X0|SLYB_SALTY Outer membrane lipoprotein slyB precursor
sp|P0A1X1|SLYB_SALTI Outer membrane lipoprotein slyB precursor
Length = 155
Score = 29.6 bits (65), Expect = 2.3
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 37 GDMLGGLVKNTIGGGILSTLANIGGNAYDSLKGKSKPEKVIRKTEMIK 180
G +LGG + NTIGGG +LA G + G+ + + KT+ ++
Sbjct: 67 GAVLGGFLGNTIGGGTGRSLATAAGAVAGGVAGQG-VQSAMNKTQGVE 113
>sp|O52191|ENO_STRTR Enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate
hydro-lyase)
Length = 422
Score = 29.6 bits (65), Expect = 2.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 73 GGGILSTLANIGGNAYDSLKGKSKPEKVIRKTEMIKEIQNLEN 201
G G+ +AN+ G Y++LKG+S P + ++ E+ EN
Sbjct: 61 GKGVSKAVANVNGEIYEALKGQS-PFNQAKLDHLMIELDGTEN 102
>sp|P59102|RF2_BUCAP Peptide chain release factor 2 (RF-2)
Length = 364
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +1
Query: 151 KVIRKTEMIKEI---QNLENILLDSLEEIFRNIKERLTAFEEYIESKD 285
++ +K E + + +NL NI+++ + I +NIKE + + IE+KD
Sbjct: 44 EIWKKKEYVHNLNKEKNLLNIIINKINNIEKNIKEMIIFLDLAIETKD 91
>sp|P0A905|SLYB_ECOLI Outer membrane lipoprotein slyB precursor
sp|P0A907|SLYB_SHIFL Outer membrane lipoprotein slyB precursor
sp|P0A906|SLYB_ECO57 Outer membrane lipoprotein slyB precursor
Length = 155
Score = 29.3 bits (64), Expect = 3.0
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +1
Query: 37 GDMLGGLVKNTIGGGILSTLANIGGNAYDSLKGKSKPEKVIRKTEMIK 180
G +LGG + NT+GGG +LA G + G+ + + KT+ ++
Sbjct: 67 GAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQG-VQSAMNKTQGVE 113
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,284,401
Number of Sequences: 369166
Number of extensions: 483563
Number of successful extensions: 2137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2136
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)