Planaria EST Database


DrC_01481

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01481
         (336 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08715|HLYAP_ECOLI  Hemolysin, plasmid                          33   0.21 
sp|Q81DT1|PRSA3_BACCR  Foldase protein prsA 3 precursor            32   0.35 
sp|Q81QT1|PRSA3_BACAN  Foldase protein prsA 3 precursor            31   1.0  
sp|Q9X291|DXS_THEMA  1-deoxy-D-xylulose-5-phosphate synthase...    30   1.7  
sp|Q58014|Y597_METJA  Hypothetical protein MJ0597                  30   1.7  
sp|P57504|MUTS_BUCAI  DNA mismatch repair protein mutS             30   1.7  
sp|P0A1X0|SLYB_SALTY  Outer membrane lipoprotein slyB precur...    30   2.3  
sp|O52191|ENO_STRTR  Enolase (2-phosphoglycerate dehydratase...    30   2.3  
sp|P59102|RF2_BUCAP  Peptide chain release factor 2 (RF-2)         30   2.3  
sp|P0A905|SLYB_ECOLI  Outer membrane lipoprotein slyB precur...    29   3.0  
>sp|P08715|HLYAP_ECOLI Hemolysin, plasmid
          Length = 1024

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
 Frame = +1

Query: 37  GDMLGGLVKNTIG------GGILSTLANIGGNAYDSLK-----GKSKPEKVIRKTEMIKE 183
           G++LGG  +N IG      GGILST  N  G A  S+K      K K    +  +E+ K 
Sbjct: 125 GNILGGGAEN-IGDNLGKAGGILSTFQNFLGTALSSMKIDELIKKQKSGGNVSSSELAKA 183

Query: 184 IQNLENILLDSLEEIFRNI 240
              L N L+D++  +  N+
Sbjct: 184 SIELINQLVDTVASLNNNV 202
>sp|Q81DT1|PRSA3_BACCR Foldase protein prsA 3 precursor
          Length = 283

 Score = 32.3 bits (72), Expect = 0.35
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
 Frame = +1

Query: 61  KNTIGGGILSTLANIGGNAYDSLKGKSKP----EKVIRKTEMIKEIQN-------LENIL 207
           K+ +G    STL  +G    D LK K KP    EK I+ T   K+++N       + +IL
Sbjct: 82  KDKMGENFKSTLEQLGLKNEDELKEKMKPEIAFEKAIKATVTDKDVKNNYKPEMKVSHIL 141

Query: 208 LDSLEEIFRNIKERLTAFEEY 270
           +   E+  + IKE++   E++
Sbjct: 142 VKD-EKTAKEIKEKVNNGEDF 161
>sp|Q81QT1|PRSA3_BACAN Foldase protein prsA 3 precursor
          Length = 283

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
 Frame = +1

Query: 61  KNTIGGGILSTLANIGGNAYDSLKGKSKP----EKVIRKTEMIKEIQN-------LENIL 207
           K+ +G    STL  +G    D LK K KP    EK I+ T   K++++       + +IL
Sbjct: 82  KDKMGDNFKSTLEQVGLKNEDELKEKMKPEIAFEKAIKATVTEKDVKDNYKPEMKVSHIL 141

Query: 208 LDSLEEIFRNIKERLTAFEEY 270
           +   E+  + +KE++   E++
Sbjct: 142 VKD-EKTAKEVKEKVNNGEDF 161
>sp|Q9X291|DXS_THEMA 1-deoxy-D-xylulose-5-phosphate synthase
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 608

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
 Frame = +1

Query: 46  LGGLVKNTIGGGILSTLANIGGNAYDS---------LKGKSKPEKVIRKTEMIKEIQNLE 198
           L   +K  +    +S   N+GG AY           LKGK   +KV+ KTE+  E++   
Sbjct: 156 LNSKMKIILNDNGMSISPNVGGLAYHLSKLRTSPIYLKGKKVLKKVLEKTEIGFEVEEEM 215

Query: 199 NILLDSLE 222
             L DSL+
Sbjct: 216 KYLRDSLK 223
>sp|Q58014|Y597_METJA Hypothetical protein MJ0597
          Length = 357

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 21/63 (33%), Positives = 33/63 (52%)
 Frame = +1

Query: 73  GGGILSTLANIGGNAYDSLKGKSKPEKVIRKTEMIKEIQNLENILLDSLEEIFRNIKERL 252
           G  +L T  +I     D L GK    KV+ KT  I+E  N+ +  +  +EE+  NI ER+
Sbjct: 293 GRELLGTFTDI-----DILAGK----KVLEKTPYIEEEINISSENIKRVEELRENINERI 343

Query: 253 TAF 261
            ++
Sbjct: 344 ESY 346
>sp|P57504|MUTS_BUCAI DNA mismatch repair protein mutS
          Length = 802

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = +1

Query: 142 KPEKVIRKTEMIKEIQNLENILLDSLEEIFRNIKERLTAFEEYIESK 282
           KP K IR   +I E+ N+E   LD L  I  N KE +  FE+  + K
Sbjct: 417 KPSKCIRDGGVIAELYNIE---LDELRSIKINSKEYIKNFEQKEKKK 460
>sp|P0A1X0|SLYB_SALTY Outer membrane lipoprotein slyB precursor
 sp|P0A1X1|SLYB_SALTI Outer membrane lipoprotein slyB precursor
          Length = 155

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 37  GDMLGGLVKNTIGGGILSTLANIGGNAYDSLKGKSKPEKVIRKTEMIK 180
           G +LGG + NTIGGG   +LA   G     + G+   +  + KT+ ++
Sbjct: 67  GAVLGGFLGNTIGGGTGRSLATAAGAVAGGVAGQG-VQSAMNKTQGVE 113
>sp|O52191|ENO_STRTR Enolase (2-phosphoglycerate dehydratase) (2-phospho-D-glycerate
           hydro-lyase)
          Length = 422

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 73  GGGILSTLANIGGNAYDSLKGKSKPEKVIRKTEMIKEIQNLEN 201
           G G+   +AN+ G  Y++LKG+S P    +   ++ E+   EN
Sbjct: 61  GKGVSKAVANVNGEIYEALKGQS-PFNQAKLDHLMIELDGTEN 102
>sp|P59102|RF2_BUCAP Peptide chain release factor 2 (RF-2)
          Length = 364

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +1

Query: 151 KVIRKTEMIKEI---QNLENILLDSLEEIFRNIKERLTAFEEYIESKD 285
           ++ +K E +  +   +NL NI+++ +  I +NIKE +   +  IE+KD
Sbjct: 44  EIWKKKEYVHNLNKEKNLLNIIINKINNIEKNIKEMIIFLDLAIETKD 91
>sp|P0A905|SLYB_ECOLI Outer membrane lipoprotein slyB precursor
 sp|P0A907|SLYB_SHIFL Outer membrane lipoprotein slyB precursor
 sp|P0A906|SLYB_ECO57 Outer membrane lipoprotein slyB precursor
          Length = 155

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 37  GDMLGGLVKNTIGGGILSTLANIGGNAYDSLKGKSKPEKVIRKTEMIK 180
           G +LGG + NT+GGG   +LA   G     + G+   +  + KT+ ++
Sbjct: 67  GAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQG-VQSAMNKTQGVE 113
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,284,401
Number of Sequences: 369166
Number of extensions: 483563
Number of successful extensions: 2137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2136
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)