Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01477
(942 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52826|CACP_COLLI Carnitine O-acetyltransferase precurso... 246 7e-65
sp|Q704S8|CACP_RAT Carnitine O-acetyltransferase (Carnitine... 243 4e-64
sp|P47934|CACP_MOUSE Carnitine O-acetyltransferase (Carniti... 240 4e-63
sp|P43155|CACP_HUMAN Carnitine O-acetyltransferase (Carniti... 233 8e-61
sp|P13222|CLAT_PIG Choline O-acetyltransferase (CHOACTase) ... 185 1e-46
sp|P32738|CLAT_RAT Choline O-acetyltransferase (CHOACTase) ... 184 4e-46
sp|Q03059|CLAT_MOUSE Choline O-acetyltransferase (CHOACTase... 181 3e-45
sp|P28329|CLAT_HUMAN Choline O-acetyltransferase (CHOACTase... 178 2e-44
sp|P07668|CLAT_DROME Choline O-acetyltransferase (CHOACTase... 172 1e-42
sp|O19094|OCTC_BOVIN Peroxisomal carnitine O-octanoyltransf... 151 3e-36
>sp|P52826|CACP_COLLI Carnitine O-acetyltransferase precursor (Carnitine acetylase) (CAT)
(Carnitine acetyltransferase) (CrAT)
Length = 627
Score = 246 bits (628), Expect = 7e-65
Identities = 130/313 (41%), Positives = 191/313 (61%), Gaps = 1/313 (0%)
Frame = +2
Query: 2 PLCMNQYLTLFNACRIPGVKRDSIYTGKSYLINNHDRISYITVVHNNRFFIMDVIDQETQ 181
PLCMNQY + ++CRIPG KRDSI + +ITVVHN +FF +DV + +
Sbjct: 168 PLCMNQYYQILSSCRIPGPKRDSIVN----YAKGKKQSRHITVVHNFQFFELDVYNSDGS 223
Query: 182 MLYSQETLFRGFSQILDMS-QNAGLPIGLMTAENRNTWGTSFNRMRSNPLNEESFLYIQK 358
L + + LF +I + S Q P+G++T +RN+W ++N + + N+ES I+K
Sbjct: 224 PLTTDQ-LFIQLEKIWNTSLQTNKEPVGILTTNHRNSWAKAYNNLLKDKTNKESVRTIEK 282
Query: 359 SILLFCLDKPVFIEEYKNENLNSIVARNMLHGNGCKMNSPNRWFDKTLQIIVSSDGACGM 538
SI CLD P+ ++ S VA MLHG G + NS NRWFDKTLQ I++ DG+CG+
Sbjct: 283 SICTICLDAPM--PRVSDDIYKSPVAAQMLHGGGSRWNSGNRWFDKTLQFIIAEDGSCGL 340
Query: 539 NYEHTPAEAPPLISIIDYIYKNIHLEESKSSSKSDTCKVKEIKFSLDKKSEEEIDASKNN 718
YEH PAE PP+++++D+I + E S K+++F++ + + +I+ +K N
Sbjct: 341 VYEHAPAEGPPIVALLDHIVEYTKKPELVRSPMIPLPMPKKLRFNITPEIKSDIEKAKQN 400
Query: 719 INSLVRDLELHAVTFSDFGKAKIKSLKVSPDAFVQMGIQLGYYNLHNIPGSTYESGSLRR 898
+N +V DL++ + F FGK KS K+SPDAF+Q+ +QL YY ++ +TYES SLR
Sbjct: 401 LNIMVEDLDVIVLVFHQFGKNYPKSEKISPDAFIQLALQLAYYRMYGHSCATYESASLRM 460
Query: 899 FNLRRTDTIRSCS 937
F L RTDTIRS S
Sbjct: 461 FRLGRTDTIRSTS 473
>sp|Q704S8|CACP_RAT Carnitine O-acetyltransferase (Carnitine acetylase) (CAT) (Carnitine
acetyltransferase) (CrAT)
Length = 626
Score = 243 bits (621), Expect = 4e-64
Identities = 128/313 (40%), Positives = 196/313 (62%), Gaps = 1/313 (0%)
Frame = +2
Query: 2 PLCMNQYLTLFNACRIPGVKRDSIYTGKSYLINNHDRISYITVVHNNRFFIMDVIDQETQ 181
PLCMNQY + ++CR+PG+K+DS+ + + ++ITVVHN +FF +DV +
Sbjct: 167 PLCMNQYYQILSSCRVPGLKQDSVVN----FLKSKKPPTHITVVHNYQFFELDVYHSDGT 222
Query: 182 MLYSQETLFRGFSQILDMS-QNAGLPIGLMTAENRNTWGTSFNRMRSNPLNEESFLYIQK 358
L S + +F +I + S Q+ P+G++T+ +RN+W +++ + + +N ES IQK
Sbjct: 223 PLTSDQ-IFVQLEKIWNSSLQSNKEPVGILTSNHRNSWAKAYSSLIKDKVNRESVNSIQK 281
Query: 359 SILLFCLDKPVFIEEYKNENLNSIVARNMLHGNGCKMNSPNRWFDKTLQIIVSSDGACGM 538
SI CLDK V ++ S VA MLHG G K NS NRWFDKTLQ IV+ DG+CGM
Sbjct: 282 SIFTVCLDKQV--PRVSDDVYRSHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGM 339
Query: 539 NYEHTPAEAPPLISIIDYIYKNIHLEESKSSSKSDTCKVKEIKFSLDKKSEEEIDASKNN 718
YEH AE PP+++++D++ + E S K+++F++ + + +I+ +K N
Sbjct: 340 VYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQN 399
Query: 719 INSLVRDLELHAVTFSDFGKAKIKSLKVSPDAFVQMGIQLGYYNLHNIPGSTYESGSLRR 898
I+ +++DL++ + F FGK KS K+SPDAF+Q+ +QL YY ++ +TYES SLR
Sbjct: 400 ISIMIQDLDIMMLVFHHFGKDFPKSQKLSPDAFIQIALQLAYYRIYGQACATYESASLRM 459
Query: 899 FNLRRTDTIRSCS 937
F+L RTDTIRS S
Sbjct: 460 FHLGRTDTIRSAS 472
>sp|P47934|CACP_MOUSE Carnitine O-acetyltransferase (Carnitine acetylase) (CAT) (Carnitine
acetyltransferase) (CrAT)
Length = 626
Score = 240 bits (613), Expect = 4e-63
Identities = 128/313 (40%), Positives = 195/313 (62%), Gaps = 1/313 (0%)
Frame = +2
Query: 2 PLCMNQYLTLFNACRIPGVKRDSIYTGKSYLINNHDRISYITVVHNNRFFIMDVIDQETQ 181
PLCMNQY + ++CR G K+DS+ + + ++ITVVHN +FF +DV + +
Sbjct: 167 PLCMNQYYQILSSCREVGPKQDSVVN----FLKSKRPPTHITVVHNYQFFELDVYNHDGT 222
Query: 182 MLYSQETLFRGFSQILDMS-QNAGLPIGLMTAENRNTWGTSFNRMRSNPLNEESFLYIQK 358
L S + +F +I + S Q+ P+G++T+ +RNTW ++N + + +N ES IQK
Sbjct: 223 PLTSDQ-IFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAYNNLIKDKVNRESVNSIQK 281
Query: 359 SILLFCLDKPVFIEEYKNENLNSIVARNMLHGNGCKMNSPNRWFDKTLQIIVSSDGACGM 538
SI CLDK V ++ + VA MLHG G K NS NRWFDKTLQ IV+ DG+CGM
Sbjct: 282 SIFTVCLDKQV--PRVSDDVYRNHVAGQMLHGGGSKFNSGNRWFDKTLQFIVAEDGSCGM 339
Query: 539 NYEHTPAEAPPLISIIDYIYKNIHLEESKSSSKSDTCKVKEIKFSLDKKSEEEIDASKNN 718
YEH AE PP+++++D++ + E S K+++F++ + + +I+ +K N
Sbjct: 340 VYEHAAAEGPPIVALVDHVMEYTKKPELVRSPMVPLPMPKKLRFNITPEIKNDIEKAKQN 399
Query: 719 INSLVRDLELHAVTFSDFGKAKIKSLKVSPDAFVQMGIQLGYYNLHNIPGSTYESGSLRR 898
++ +++DL++ +TF FGK KS K+SPDAF+Q+ +QL YY ++ +TYES SLR
Sbjct: 400 LSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQVALQLAYYRIYGQACATYESASLRM 459
Query: 899 FNLRRTDTIRSCS 937
F+L RTDTIRS S
Sbjct: 460 FHLGRTDTIRSAS 472
>sp|P43155|CACP_HUMAN Carnitine O-acetyltransferase (Carnitine acetylase) (CAT) (Carnitine
acetyltransferase) (CrAT)
Length = 626
Score = 233 bits (593), Expect = 8e-61
Identities = 123/313 (39%), Positives = 191/313 (61%), Gaps = 1/313 (0%)
Frame = +2
Query: 2 PLCMNQYLTLFNACRIPGVKRDSIYTGKSYLINNHDRISYITVVHNNRFFIMDVIDQETQ 181
PLCMNQY + ++CR+PG K+D++ S ++ITVVHN +FF +DV +
Sbjct: 167 PLCMNQYYQILSSCRVPGPKQDTV----SNFSKTKKPPTHITVVHNYQFFELDVYHSDGT 222
Query: 182 MLYSQETLFRGFSQILDMS-QNAGLPIGLMTAENRNTWGTSFNRMRSNPLNEESFLYIQK 358
L + + +F +I + S Q P+G++T+ +RN+W ++N + + +N +S IQK
Sbjct: 223 PLTADQ-IFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLIKDKVNRDSVRSIQK 281
Query: 359 SILLFCLDKPVFIEEYKNENLNSIVARNMLHGNGCKMNSPNRWFDKTLQIIVSSDGACGM 538
SI CLD + + S VA MLHG G ++NS NRWFDKTLQ IV+ DG+CG+
Sbjct: 282 SIFTVCLDATM--PRVSEDVYRSHVAGQMLHGGGSRLNSGNRWFDKTLQFIVAEDGSCGL 339
Query: 539 NYEHTPAEAPPLISIIDYIYKNIHLEESKSSSKSDTCKVKEIKFSLDKKSEEEIDASKNN 718
YEH AE P+++++DY+ + E S K+++F++ + + +I+ +K N
Sbjct: 340 VYEHAAAEGFPIVTLLDYVIEYTKKPELVRSPMVPLPMPKKLRFNITPEIKSDIEKAKQN 399
Query: 719 INSLVRDLELHAVTFSDFGKAKIKSLKVSPDAFVQMGIQLGYYNLHNIPGSTYESGSLRR 898
++ +++DL++ + F FGK KS K+SPDAF+QM +QL YY ++ +TYES SLR
Sbjct: 400 LSIMIQDLDITVMVFHHFGKDFPKSEKLSPDAFIQMALQLAYYRIYGQACATYESASLRM 459
Query: 899 FNLRRTDTIRSCS 937
F+L RTDTIRS S
Sbjct: 460 FHLGRTDTIRSAS 472
>sp|P13222|CLAT_PIG Choline O-acetyltransferase (CHOACTase) (Choline acetylase) (ChAT)
Length = 641
Score = 185 bits (470), Expect = 1e-46
Identities = 109/320 (34%), Positives = 173/320 (54%), Gaps = 7/320 (2%)
Frame = +2
Query: 2 PLCMNQYLTLFNACRIPGVKRDSIYTGKSYLINNHDRISYITVVHNNRFFIMDVIDQETQ 181
PLCM QY LF++ R+PG +D++ KS ++ + ++ V N+FF++DV+ +
Sbjct: 160 PLCMKQYYGLFSSYRLPGHTQDTLVAQKSSVMPEPE---HVIVACCNQFFVLDVVINFRR 216
Query: 182 MLYSQETLFRGFSQILDMSQNAGL---PIGLMTAENRNTWGTSFNRMRSNPLNEESFLYI 352
+ S+ LF +I+ M+ N PIGL+T++ R+ W + + + N +S I
Sbjct: 217 L--SEGDLFTQLRKIVRMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMI 274
Query: 353 QKSILLFCLDKPVFIEEYKNENLNSIVARNMLHGNGCKMNSPNRWFDKTLQIIVSSDGAC 532
++ I L CLD P +E A +LHG GC N NRW+DK+LQ +V DG C
Sbjct: 275 ERCICLVCLDAPGGMELSDTNR-----ALQLLHGGGCSKNGANRWYDKSLQFVVGRDGTC 329
Query: 533 GMNYEHTPAEAPPLISIIDYIYKNIHLEESKSSSKSDTCKVKEIKFSLDKKSEEEID--- 703
G+ EH+P + L+ +++ K++ ++ SK ++D+ L K EI
Sbjct: 330 GVVCEHSPFDGIVLVQCTEHLLKHM-VKSSKKMVRADSVSELPAPRRLRWKCSPEIQGLL 388
Query: 704 -ASKNNINSLVRDLELHAVTFSDFGKAKIKSLKVSPDAFVQMGIQLGYYNLHNIPGSTYE 880
+S + +V++L+ F D+GK IK K SPDAF+Q+ +QL +Y LH TYE
Sbjct: 389 ASSAEKLQQIVKNLDFTVYKFDDYGKTFIKQQKCSPDAFIQVALQLAFYRLHGRLVPTYE 448
Query: 881 SGSLRRFNLRRTDTIRSCSP 940
S S+RRF+ R D IRS +P
Sbjct: 449 SASIRRFHEGRVDNIRSATP 468
>sp|P32738|CLAT_RAT Choline O-acetyltransferase (CHOACTase) (Choline acetylase) (ChAT)
Length = 640
Score = 184 bits (466), Expect = 4e-46
Identities = 103/319 (32%), Positives = 173/319 (54%), Gaps = 6/319 (1%)
Frame = +2
Query: 2 PLCMNQYLTLFNACRIPGVKRDSIYTGKSYLINNHDRISYITVVHNNRFFIMDVIDQETQ 181
PLCM QY LF++ R+PG +D++ KS ++ + ++ V N+FF++DV+ +
Sbjct: 159 PLCMKQYYRLFSSYRLPGHTQDTLVAQKSSIMPEPE---HVIVACCNQFFVLDVVINFRR 215
Query: 182 MLYSQETLFRGFSQILDMSQNAGL---PIGLMTAENRNTWGTSFNRMRSNPLNEESFLYI 352
+ S+ LF +I+ M+ N PIGL+T++ R+ W + + + N +S I
Sbjct: 216 L--SEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLDMI 273
Query: 353 QKSILLFCLDKPVFIEEYKNENLNSIVARNMLHGNGCKMNSPNRWFDKTLQIIVSSDGAC 532
++ I L CLD P E ++ A +LHG GC +N NRW+DK+LQ +V DG C
Sbjct: 274 ERCICLVCLDGPG-----TGELSDTHRALQLLHGGGCSLNGANRWYDKSLQFVVGRDGTC 328
Query: 533 GMNYEHTPAEAPPLISIIDYIYKNIHLEESK---SSSKSDTCKVKEIKFSLDKKSEEEID 703
G+ EH+P + L+ +++ K++ K + S S+ + ++ +++ +
Sbjct: 329 GVVCEHSPFDGIVLVQCTEHLLKHMMTSNKKLVRADSVSELPAPRRLRLKCSPETQGHLA 388
Query: 704 ASKNNINSLVRDLELHAVTFSDFGKAKIKSLKVSPDAFVQMGIQLGYYNLHNIPGSTYES 883
+S + +V++L+ F ++GK IK K SPD F+Q+ +QL YY L+ TYES
Sbjct: 389 SSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQKYSPDGFIQVALQLAYYRLYQRLVPTYES 448
Query: 884 GSLRRFNLRRTDTIRSCSP 940
S+RRF R D IRS +P
Sbjct: 449 ASIRRFQEGRVDNIRSATP 467
>sp|Q03059|CLAT_MOUSE Choline O-acetyltransferase (CHOACTase) (Choline acetylase) (ChAT)
Length = 641
Score = 181 bits (459), Expect = 3e-45
Identities = 102/319 (31%), Positives = 173/319 (54%), Gaps = 6/319 (1%)
Frame = +2
Query: 2 PLCMNQYLTLFNACRIPGVKRDSIYTGKSYLINNHDRISYITVVHNNRFFIMDVIDQETQ 181
PLCM QY LF++ R+PG +D++ KS ++ + ++ V N+FF++DV+ +
Sbjct: 160 PLCMKQYYRLFSSYRLPGHTQDTLVAQKSSIMPEPE---HVIVACCNQFFVLDVVINFRR 216
Query: 182 MLYSQETLFRGFSQILDMSQNAGL---PIGLMTAENRNTWGTSFNRMRSNPLNEESFLYI 352
+ S+ LF +I+ M+ N PIGL+T++ R+ W + + + N +S I
Sbjct: 217 L--SEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAKARTVLLKDSTNRDSLDMI 274
Query: 353 QKSILLFCLDKPVFIEEYKNENLNSIVARNMLHGNGCKMNSPNRWFDKTLQIIVSSDGAC 532
++ I L CLD P + ++ A +LHG GC +N NRW+DK+LQ +V DG C
Sbjct: 275 ERCICLVCLDGPG-----TGDLSDTHRALQLLHGGGCSLNGANRWYDKSLQFVVGRDGTC 329
Query: 533 GMNYEHTPAEAPPLISIIDYIYKNIHLEESKS---SSKSDTCKVKEIKFSLDKKSEEEID 703
G+ EH+P + L+ +++ K++ K S S+ + +++ +++ +
Sbjct: 330 GVVCEHSPFDGIVLVQCTEHLLKHMMTGNKKLVRVDSVSELPAPRRLRWKCSPETQGHLA 389
Query: 704 ASKNNINSLVRDLELHAVTFSDFGKAKIKSLKVSPDAFVQMGIQLGYYNLHNIPGSTYES 883
+S + +V++L+ F ++GK IK K SPD F+Q+ +QL YY L+ TYES
Sbjct: 390 SSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQKCSPDGFIQVALQLAYYRLYQRLVPTYES 449
Query: 884 GSLRRFNLRRTDTIRSCSP 940
S+RRF R D IRS +P
Sbjct: 450 ASIRRFQEGRVDNIRSATP 468
>sp|P28329|CLAT_HUMAN Choline O-acetyltransferase (CHOACTase) (Choline acetylase) (ChAT)
Length = 748
Score = 178 bits (452), Expect = 2e-44
Identities = 102/319 (31%), Positives = 170/319 (53%), Gaps = 6/319 (1%)
Frame = +2
Query: 2 PLCMNQYLTLFNACRIPGVKRDSIYTGKSYLINNHDRISYITVVHNNRFFIMDVIDQETQ 181
PLCM QY LF++ R+PG +D++ S ++ + ++ V N+FF++DV+ +
Sbjct: 267 PLCMKQYYGLFSSYRLPGHTQDTLVAQNSSIMPEPE---HVIVACCNQFFVLDVVINFRR 323
Query: 182 MLYSQETLFRGFSQILDMSQNAGL---PIGLMTAENRNTWGTSFNRMRSNPLNEESFLYI 352
+ S+ LF +I+ M+ N PIGL+T++ R+ W + + + N +S I
Sbjct: 324 L--SEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWAEARTVLVKDSTNRDSLDMI 381
Query: 353 QKSILLFCLDKPVFIEEYKNENLNSIVARNMLHGNGCKMNSPNRWFDKTLQIIVSSDGAC 532
++ I L CLD P +E A +LHG G N NRW+DK+LQ +V DG C
Sbjct: 382 ERCICLVCLDAPGGVELSDTHR-----ALQLLHGGGYSKNGANRWYDKSLQFVVGRDGTC 436
Query: 533 GMNYEHTPAEAPPLISIIDYIYKNIHLEESK---SSSKSDTCKVKEIKFSLDKKSEEEID 703
G+ EH+P + L+ +++ K++ K + S S+ + +++ + + +
Sbjct: 437 GVVCEHSPFDGIVLVQCTEHLLKHMTQSSRKLIRADSVSELPAPRRLRWKCSPEIQGHLA 496
Query: 704 ASKNNINSLVRDLELHAVTFSDFGKAKIKSLKVSPDAFVQMGIQLGYYNLHNIPGSTYES 883
+S + +V++L+ F ++GK IK K SPDAF+Q+ +QL +Y LH TYES
Sbjct: 497 SSAEKLQRIVKNLDFIVYKFDNYGKTFIKKQKCSPDAFIQVALQLAFYRLHRRLVPTYES 556
Query: 884 GSLRRFNLRRTDTIRSCSP 940
S+RRF R D IRS +P
Sbjct: 557 ASIRRFQEGRVDNIRSATP 575
>sp|P07668|CLAT_DROME Choline O-acetyltransferase (CHOACTase) (Choline acetylase)
(Acetyl-CoA) (ChAT) [Contains: Choline
O-acetyltransferase 67 kDa chain; Choline
O-acetyltransferase 54 kDa chain; Choline
O-acetyltransferase 13 kDa chain]
Length = 721
Score = 172 bits (436), Expect = 1e-42
Identities = 100/333 (30%), Positives = 174/333 (52%), Gaps = 21/333 (6%)
Frame = +2
Query: 2 PLCMNQYLTLFNACRIPGVKRDSIYTGKSYLINNHDRISYITVVHNNRFFIMDVIDQETQ 181
PLCM QY L +CR PGVK+DS + +N+ DR ++ V+ N+ + + + +
Sbjct: 224 PLCMAQYYRLLGSCRRPGVKQDSQFLPSRERLNDEDR--HVVVICRNQMYCVVLQASDRG 281
Query: 182 MLYSQETLFRGFSQILDMSQNAG------LPIGLMTAENRNTWGTSFNRMRSNPLNEESF 343
L E SQIL + +A +P+GL+TAE R+TW ++ + N+ +
Sbjct: 282 KLSESEIA----SQILYVLSDAPCLPAKPVPVGLLTAEPRSTWARDREMLQEDERNQRNL 337
Query: 344 LYIQKSILLFCLDKPVF-------------IEEYKNENLNSIVARNMLHGNGCKMNSPNR 484
I+ + ++ CLD+P+ + + +A M+HG G + NS NR
Sbjct: 338 ELIETAQVVLCLDEPLAGNFNARGFTGATPTVHRAGDRDETNMAHEMIHGGGSEYNSGNR 397
Query: 485 WFDKTLQIIVSSDGACGMNYEHTPAEAPPLISIIDYIYKNI--HLEESKSSSKSDTCKVK 658
WFDKT+Q+I+ +DG G+ YEH+ +E ++ +++ IYK I H +E + +
Sbjct: 398 WFDKTMQLIICTDGTWGLCYEHSCSEGIAVVQLLEKIYKKIEEHPDEDNGLPQHHLPPPE 457
Query: 659 EIKFSLDKKSEEEIDASKNNINSLVRDLELHAVTFSDFGKAKIKSLKVSPDAFVQMGIQL 838
+++ + + + + +++ + DL+ + + +GK IKS +VSPD ++Q+ +QL
Sbjct: 458 RLEWHVGPQLQLRFAQASKSVDKCIDDLDFYVYRYQSYGKTFIKSCQVSPDVYIQLALQL 517
Query: 839 GYYNLHNIPGSTYESGSLRRFNLRRTDTIRSCS 937
+Y L+ +TYES S RRF R D IR+ S
Sbjct: 518 AHYKLYGRLVATYESASTRRFLHGRVDCIRAAS 550
>sp|O19094|OCTC_BOVIN Peroxisomal carnitine O-octanoyltransferase (COT)
Length = 612
Score = 151 bits (381), Expect = 3e-36
Identities = 104/319 (32%), Positives = 157/319 (49%), Gaps = 7/319 (2%)
Frame = +2
Query: 2 PLCMNQYLTLFNACRIPGVKRDSIYTGKSYLINNHDRISYITVVHNNRFFIMDVIDQETQ 181
PL MNQ+ LF+ C+IPG+ RDSI H S++ V+ R F+ DV+ +
Sbjct: 153 PLDMNQFRMLFSTCKIPGITRDSIINYFRTESEGHSP-SHLAVLCRGRVFVFDVMHEGYL 211
Query: 182 MLYSQETLFRGFSQILDMSQNAGLPIGLMTAENRNTWGTSFNRMRS-NPLNEESFLYIQK 358
M + + Q S+ G + +T E R W + + S NP N IQ
Sbjct: 212 MTAPEIQRQLTYIQKKCHSEPDGPGVAALTTEERTRWAKAREYLISLNPENLTILEKIQS 271
Query: 359 SILLFCLDKP---VFIEEYKNENLNSIVARNMLHGNGCKMNSPNRWFDKTLQIIVSSDGA 529
S+L+FCLD V E+Y S V+ +L+G+ RW DK+ +I S+G
Sbjct: 272 SLLVFCLDDDSPHVTPEDY------SQVSAKILNGDPTV-----RWGDKSYNLIAFSNGV 320
Query: 530 CGMNYEHTPAEAPPLISIIDYIYKNIHLEESK---SSSKSDTCKVKEIKFSLDKKSEEEI 700
G N +H P +A L+ + Y+ +NI E + S D +E+ F++D+K +I
Sbjct: 321 FGSNCDHAPFDAMVLVKVCYYVDENILENEGRWKGSEKVRDIPVPEELVFTVDEKVLNDI 380
Query: 701 DASKNNINSLVRDLELHAVTFSDFGKAKIKSLKVSPDAFVQMGIQLGYYNLHNIPGSTYE 880
+ +K V DL+L F+ FGK K ++ PD F+Q+ +QL YY LH PG YE
Sbjct: 381 NQAKAQYFKQVSDLQLVVYAFTSFGKKLTKEKQLHPDTFIQLALQLAYYRLHGRPGCCYE 440
Query: 881 SGSLRRFNLRRTDTIRSCS 937
+ R F RT+T+R C+
Sbjct: 441 TAMTRLFYHGRTETVRPCT 459
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,344,711
Number of Sequences: 369166
Number of extensions: 1821164
Number of successful extensions: 5328
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5231
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9750928390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)