Planaria EST Database


DrC_01475

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01475
         (785 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P29817|VG1L_AMEPV  G1L protein                                  32   2.6  
sp|Q66AP6|MSRB_YERPS  Peptide methionine sulfoxide reductase...    32   2.6  
sp|P16733|VGLM_HCMVA  Glycoprotein M                               31   4.4  
sp|P29240|5NTD_DISOM  5'-nucleotidase precursor (Ecto-nucleo...    30   9.8  
>sp|P29817|VG1L_AMEPV G1L protein
          Length = 464

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +2

Query: 599 NLDFTLI*LLKYFRQDLF---NFYLCTSYE*YY*NCICSYFNVIFAYFI 736
           N  +  I +L  +  D+F   N+Y   ++E  Y +  C  FN+IF Y+I
Sbjct: 316 NYAYLYIDVLSEYLNDIFKNVNYYFFNTFELQYDSPDCGMFNIIFLYYI 364
>sp|Q66AP6|MSRB_YERPS Peptide methionine sulfoxide reductase msrB
 sp|Q8ZEK7|MSRB_YERPE Peptide methionine sulfoxide reductase msrB
          Length = 137

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = +2

Query: 215 PYTVSED--DMAFGWPTKYWQLDMDSVGKDVWDRSITEACEEYKTRMH--NLCCDNCHSH 382
           P  +SE   D   GWP+ Y  +D DS+             ++Y   MH   + C NC +H
Sbjct: 52  PLFISESKFDSGCGWPSFYQPIDADSI----------RYIDDYSHNMHRIEIRCGNCDAH 101

Query: 383 VAY 391
           + +
Sbjct: 102 LGH 104
>sp|P16733|VGLM_HCMVA Glycoprotein M
          Length = 372

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/60 (31%), Positives = 26/60 (43%)
 Frame = +1

Query: 103 ISKLYSLDTFANSELDYPYYRSYGYCNI*WSHSRFCRPVHSFGGRHGIRMAYKVLATRHG 282
           I  +   DTF ++E       S+G     W+    CR V  F GR    + Y+ LAT  G
Sbjct: 281 IYPIVQYDTFLSNEYRTGISWSFGMLFFIWAMFTTCRAVRYFRGRGSGSVKYQALATASG 340
>sp|P29240|5NTD_DISOM 5'-nucleotidase precursor (Ecto-nucleotidase)
          Length = 577

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
 Frame = +2

Query: 266 WQLDMDSVGKDVWDRSI------TEACEEYKTRMHNLCCDNCHSHVAYALNLMNFHGHNR 427
           W+  + + GK+V  R++      TE C   +  M NL CD          N+ N      
Sbjct: 327 WKESLANFGKEVIGRTVVYLNGTTEECRNRECNMGNLICD-----AMIQQNIRN-PDEKF 380

Query: 428 WNMVSLC 448
           WN VS+C
Sbjct: 381 WNHVSIC 387
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,505,754
Number of Sequences: 369166
Number of extensions: 1806315
Number of successful extensions: 4241
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4238
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)