Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01475
(785 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29817|VG1L_AMEPV G1L protein 32 2.6
sp|Q66AP6|MSRB_YERPS Peptide methionine sulfoxide reductase... 32 2.6
sp|P16733|VGLM_HCMVA Glycoprotein M 31 4.4
sp|P29240|5NTD_DISOM 5'-nucleotidase precursor (Ecto-nucleo... 30 9.8
>sp|P29817|VG1L_AMEPV G1L protein
Length = 464
Score = 31.6 bits (70), Expect = 2.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 599 NLDFTLI*LLKYFRQDLF---NFYLCTSYE*YY*NCICSYFNVIFAYFI 736
N + I +L + D+F N+Y ++E Y + C FN+IF Y+I
Sbjct: 316 NYAYLYIDVLSEYLNDIFKNVNYYFFNTFELQYDSPDCGMFNIIFLYYI 364
>sp|Q66AP6|MSRB_YERPS Peptide methionine sulfoxide reductase msrB
sp|Q8ZEK7|MSRB_YERPE Peptide methionine sulfoxide reductase msrB
Length = 137
Score = 31.6 bits (70), Expect = 2.6
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +2
Query: 215 PYTVSED--DMAFGWPTKYWQLDMDSVGKDVWDRSITEACEEYKTRMH--NLCCDNCHSH 382
P +SE D GWP+ Y +D DS+ ++Y MH + C NC +H
Sbjct: 52 PLFISESKFDSGCGWPSFYQPIDADSI----------RYIDDYSHNMHRIEIRCGNCDAH 101
Query: 383 VAY 391
+ +
Sbjct: 102 LGH 104
>sp|P16733|VGLM_HCMVA Glycoprotein M
Length = 372
Score = 30.8 bits (68), Expect = 4.4
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +1
Query: 103 ISKLYSLDTFANSELDYPYYRSYGYCNI*WSHSRFCRPVHSFGGRHGIRMAYKVLATRHG 282
I + DTF ++E S+G W+ CR V F GR + Y+ LAT G
Sbjct: 281 IYPIVQYDTFLSNEYRTGISWSFGMLFFIWAMFTTCRAVRYFRGRGSGSVKYQALATASG 340
>sp|P29240|5NTD_DISOM 5'-nucleotidase precursor (Ecto-nucleotidase)
Length = 577
Score = 29.6 bits (65), Expect = 9.8
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Frame = +2
Query: 266 WQLDMDSVGKDVWDRSI------TEACEEYKTRMHNLCCDNCHSHVAYALNLMNFHGHNR 427
W+ + + GK+V R++ TE C + M NL CD N+ N
Sbjct: 327 WKESLANFGKEVIGRTVVYLNGTTEECRNRECNMGNLICD-----AMIQQNIRN-PDEKF 380
Query: 428 WNMVSLC 448
WN VS+C
Sbjct: 381 WNHVSIC 387
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,505,754
Number of Sequences: 369166
Number of extensions: 1806315
Number of successful extensions: 4241
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4238
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)