Planaria EST Database


DrC_01464

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01464
         (567 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O61308|PUMA_PARUN  227 kDa spindle- and centromere-associ...    35   0.099
sp|Q05482|ATI_CAMPC  A-type inclusion protein (ATI)                35   0.13 
sp|Q8V2M9|ATI_CAMPM  A-type inclusion protein (ATI) >gi|5640...    35   0.13 
sp|P16602|ATI_COWPX  A-type inclusion protein (ATI)                35   0.13 
sp|P24759|ATI1_VACCV  94 kDa A-type inclusion protein (ATI)        33   0.38 
sp|Q6ZU80|CN145_HUMAN  Protein C14orf145                           33   0.49 
sp|Q92351|PCP1_SCHPO  Spindle pole body protein pcp1               33   0.64 
sp|Q8VD04|GRAP1_MOUSE  GRIP1-associated protein 1 (GRASP-1) ...    32   1.1  
sp|Q9UTJ8|RAD50_SCHPO  DNA repair protein rad50                    32   1.1  
sp|Q9M9F9|Y1843_ARATH  Hypothetical protein At1g78430              32   1.4  
>sp|O61308|PUMA_PARUN 227 kDa spindle- and centromere-associated protein (PUMA1)
          Length = 1955

 Score = 35.4 bits (80), Expect = 0.099
 Identities = 20/80 (25%), Positives = 42/80 (52%)
 Frame = +1

Query: 31   ESTQSMDQVDLLKHRIRILETENDDMLKTIQRLKLEVKEAQTFAVKCKGDANEEINKLFL 210
            E+ +S  +++ LKH+I  +    +     ++RLK ++ +  T       + NE+I KL +
Sbjct: 1091 ENRKSKTEIEALKHQIDTIMNTKESCESEVERLKKKIVQTTTIT----KEQNEKIEKLRI 1146

Query: 211  KCSNLERSLFTESDENKKLR 270
            +  +LER    ++ E  +L+
Sbjct: 1147 EHDHLERDYREKTKEVDRLK 1166
>sp|Q05482|ATI_CAMPC A-type inclusion protein (ATI)
          Length = 726

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
 Frame = +1

Query: 7   KTLGHQVIESTQSMD---QVDLLKHRIRILETENDDMLKT-------IQRLKLEVKEAQT 156
           K L  ++ E T++ +   +VD L+ RIR LE +  D +++       I RL+  + + + 
Sbjct: 622 KDLESRLDECTRNQEDTQEVDALRSRIRELENKLTDCIESGGGNLTEISRLQSRISDLER 681

Query: 157 FAVKCKGDANEEINKLFLKCSNLERSL 237
              +C+G+   EI++L  + S+LER L
Sbjct: 682 QLNECRGNVT-EISRLESRISDLERQL 707
>sp|Q8V2M9|ATI_CAMPM A-type inclusion protein (ATI)
 sp|Q775Q2|ATI_CAMPS A-type inclusion protein (ATI)
          Length = 726

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
 Frame = +1

Query: 7   KTLGHQVIESTQSMD---QVDLLKHRIRILETENDDMLKT-------IQRLKLEVKEAQT 156
           K L  ++ E T++ +   +VD L+ RIR LE +  D +++       I RL+  + + + 
Sbjct: 622 KDLESRLDECTRNQEDTQEVDALRSRIRELENKLTDCIESGGGNLTEISRLQSRISDLER 681

Query: 157 FAVKCKGDANEEINKLFLKCSNLERSL 237
              +C+G+   EI++L  + S+LER L
Sbjct: 682 QLNECRGNVT-EISRLESRISDLERQL 707
>sp|P16602|ATI_COWPX A-type inclusion protein (ATI)
          Length = 1284

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
 Frame = +1

Query: 40  QSMDQVDLLKHRIRILETENDDMLKT-------IQRLKLEVKEAQTFAVKCKGDANEEIN 198
           +   +VD L+ RIR LE +  D +++       I RL+ ++ + +    +C+G+A  EI+
Sbjct: 637 EDTQEVDALRSRIRELENKLADCMESGGGNLTEISRLQSKISDLERQLRECRGNAT-EIS 695

Query: 199 KLFLKCSNLERSL 237
           +L  + ++LER L
Sbjct: 696 RLQYRITDLERQL 708

 Score = 34.7 bits (78), Expect = 0.17
 Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
 Frame = +1

Query: 97   NDDMLKTIQRLKLEVKEAQTFAVKCKGDAN----EEINKLFLKCSNLERSLFTESDENKK 264
            N DM + +QRL+  + +      +CK D N    EE+N+L  +  +LERSL   S +  +
Sbjct: 749  NADMEREMQRLRDRIMDLDRQLNECKRDGNGTSSEEVNRLKTRIRDLERSLEICSKDESE 808

Query: 265  LRIKLSRYCGPTPPRNQSSTLNHNTKDRPPSRQSGFSDS 381
            L        G    R Q S L  + +     R+S  +DS
Sbjct: 809  LYSAYKSELGRA--REQISNLQESLR---RERESDKTDS 842
>sp|P24759|ATI1_VACCV 94 kDa A-type inclusion protein (ATI)
          Length = 724

 Score = 33.5 bits (75), Expect = 0.38
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
 Frame = +1

Query: 40  QSMDQVDLLKHRIRILETENDDMLKT-------IQRLKLEVKEAQTFAVKCKGDANEEIN 198
           +   +VD L+ RIR LE +  D +++       I RL+ ++ + +    +C+ +A  EI+
Sbjct: 634 EDTQEVDALRSRIRELENKLTDCIESGGGNLTEISRLQSKISDLERQLSECRENAT-EIS 692

Query: 199 KLFLKCSNLERSL 237
           +L  + S+LER L
Sbjct: 693 RLQSRISDLERQL 705
>sp|Q6ZU80|CN145_HUMAN Protein C14orf145
          Length = 623

 Score = 33.1 bits (74), Expect = 0.49
 Identities = 23/85 (27%), Positives = 40/85 (47%)
 Frame = +1

Query: 22  QVIESTQSMDQVDLLKHRIRILETENDDMLKTIQRLKLEVKEAQTFAVKCKGDANEEINK 201
           Q +++    +  +L+KH     + E  +    I+ LK E  E +  A   +G    ++ K
Sbjct: 341 QSVKTKHEQNIQELMKH----FKKEKSEAENHIRTLKAESLEEKNMAKIHRG----QLEK 392

Query: 202 LFLKCSNLERSLFTESDENKKLRIK 276
           L  +C  L   L    +ENKKL++K
Sbjct: 393 LKSQCDRLTEELTQNENENKKLKLK 417
>sp|Q92351|PCP1_SCHPO Spindle pole body protein pcp1
          Length = 1208

 Score = 32.7 bits (73), Expect = 0.64
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = +1

Query: 10  TLGHQVIESTQSMDQVDLLKHRIRILETENDD--MLKTIQRLKLEVKEAQTFAVKCKGDA 183
           +LG+Q+        ++D  K+ +R+L ++N D  + +T  RL+   KE +T  +K   D 
Sbjct: 460 SLGNQIESLRTQNREIDEEKNHLRLLASKNSDKALAETNIRLQEVTKELETLRMKNSNDL 519

Query: 184 NE 189
           NE
Sbjct: 520 NE 521
>sp|Q8VD04|GRAP1_MOUSE GRIP1-associated protein 1 (GRASP-1) (HCMV-interacting protein)
          Length = 806

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 3/136 (2%)
 Frame = +1

Query: 49  DQVDLLKHRIRILETENDDMLKTIQRLKLEVK---EAQTFAVKCKGDANEEINKLFLKCS 219
           +++  ++ +++  + E D  +KTI  LK EVK   + Q    K KG A            
Sbjct: 528 EELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEK-KGSA---------VLK 577

Query: 220 NLERSLFTESDENKKLRIKLSRYCGPTPPRNQSSTLNHNTKDRPPSRQSGFSDSLGTFAP 399
           +L+R L  E     KL+ +L      +  R     L  +  + P   Q+G S S+ +F+ 
Sbjct: 578 DLKRQLHLERKRADKLQERLQEILTNSKSRTGLEELVLSEMNSPSRTQTGDSSSVSSFSY 637

Query: 400 LPFIPFTPQSPTPNNS 447
              +     S  P  S
Sbjct: 638 REILKEKESSAIPARS 653
>sp|Q9UTJ8|RAD50_SCHPO DNA repair protein rad50
          Length = 1290

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
 Frame = +1

Query: 31  ESTQSMDQVDLLKHRIRILETENDDMLKTIQRLKLEVKEAQTF--AVKCKGDANEEINKL 204
           E+    D+++LL  R+   +TE  D+   +Q L +   E Q+    +  +    E++  L
Sbjct: 723 EAKPIFDEIELLDKRLSETKTELSDLQGDLQGLDIRKDEIQSELDTLYLRRANLEKLQLL 782

Query: 205 FLKCSNLERSLFTESDENKKLRIKL 279
               SNLE  + T   E + LRI+L
Sbjct: 783 VKDISNLEEEIRTIDRETEVLRIEL 807
>sp|Q9M9F9|Y1843_ARATH Hypothetical protein At1g78430
          Length = 326

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
 Frame = +1

Query: 31  ESTQSMDQVDLLKHRIRILETENDDMLKTIQRLKLEVKEAQT--FAVKCKGD-------- 180
           E     DQ+++LK R+  LE E   + +  + LK ++K+  T     K K D        
Sbjct: 153 ELASKEDQINVLKARLYDLEKERVSLSEENETLKDQLKKTDTEMSCAKAKEDEIASKVSQ 212

Query: 181 -------ANEEINKLFLKCSNLERSLFTESDENKKLRIKLSRY 288
                  +NE   KL  K  ++E +  T   E KKL+++  ++
Sbjct: 213 IGEELEESNETTAKLKKKLESVEEAKETLEAEMKKLKVQTEQW 255
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,650,916
Number of Sequences: 369166
Number of extensions: 1040597
Number of successful extensions: 3077
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3066
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4127973360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)