Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01464
(567 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O61308|PUMA_PARUN 227 kDa spindle- and centromere-associ... 35 0.099
sp|Q05482|ATI_CAMPC A-type inclusion protein (ATI) 35 0.13
sp|Q8V2M9|ATI_CAMPM A-type inclusion protein (ATI) >gi|5640... 35 0.13
sp|P16602|ATI_COWPX A-type inclusion protein (ATI) 35 0.13
sp|P24759|ATI1_VACCV 94 kDa A-type inclusion protein (ATI) 33 0.38
sp|Q6ZU80|CN145_HUMAN Protein C14orf145 33 0.49
sp|Q92351|PCP1_SCHPO Spindle pole body protein pcp1 33 0.64
sp|Q8VD04|GRAP1_MOUSE GRIP1-associated protein 1 (GRASP-1) ... 32 1.1
sp|Q9UTJ8|RAD50_SCHPO DNA repair protein rad50 32 1.1
sp|Q9M9F9|Y1843_ARATH Hypothetical protein At1g78430 32 1.4
>sp|O61308|PUMA_PARUN 227 kDa spindle- and centromere-associated protein (PUMA1)
Length = 1955
Score = 35.4 bits (80), Expect = 0.099
Identities = 20/80 (25%), Positives = 42/80 (52%)
Frame = +1
Query: 31 ESTQSMDQVDLLKHRIRILETENDDMLKTIQRLKLEVKEAQTFAVKCKGDANEEINKLFL 210
E+ +S +++ LKH+I + + ++RLK ++ + T + NE+I KL +
Sbjct: 1091 ENRKSKTEIEALKHQIDTIMNTKESCESEVERLKKKIVQTTTIT----KEQNEKIEKLRI 1146
Query: 211 KCSNLERSLFTESDENKKLR 270
+ +LER ++ E +L+
Sbjct: 1147 EHDHLERDYREKTKEVDRLK 1166
>sp|Q05482|ATI_CAMPC A-type inclusion protein (ATI)
Length = 726
Score = 35.0 bits (79), Expect = 0.13
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Frame = +1
Query: 7 KTLGHQVIESTQSMD---QVDLLKHRIRILETENDDMLKT-------IQRLKLEVKEAQT 156
K L ++ E T++ + +VD L+ RIR LE + D +++ I RL+ + + +
Sbjct: 622 KDLESRLDECTRNQEDTQEVDALRSRIRELENKLTDCIESGGGNLTEISRLQSRISDLER 681
Query: 157 FAVKCKGDANEEINKLFLKCSNLERSL 237
+C+G+ EI++L + S+LER L
Sbjct: 682 QLNECRGNVT-EISRLESRISDLERQL 707
>sp|Q8V2M9|ATI_CAMPM A-type inclusion protein (ATI)
sp|Q775Q2|ATI_CAMPS A-type inclusion protein (ATI)
Length = 726
Score = 35.0 bits (79), Expect = 0.13
Identities = 26/87 (29%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Frame = +1
Query: 7 KTLGHQVIESTQSMD---QVDLLKHRIRILETENDDMLKT-------IQRLKLEVKEAQT 156
K L ++ E T++ + +VD L+ RIR LE + D +++ I RL+ + + +
Sbjct: 622 KDLESRLDECTRNQEDTQEVDALRSRIRELENKLTDCIESGGGNLTEISRLQSRISDLER 681
Query: 157 FAVKCKGDANEEINKLFLKCSNLERSL 237
+C+G+ EI++L + S+LER L
Sbjct: 682 QLNECRGNVT-EISRLESRISDLERQL 707
>sp|P16602|ATI_COWPX A-type inclusion protein (ATI)
Length = 1284
Score = 35.0 bits (79), Expect = 0.13
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Frame = +1
Query: 40 QSMDQVDLLKHRIRILETENDDMLKT-------IQRLKLEVKEAQTFAVKCKGDANEEIN 198
+ +VD L+ RIR LE + D +++ I RL+ ++ + + +C+G+A EI+
Sbjct: 637 EDTQEVDALRSRIRELENKLADCMESGGGNLTEISRLQSKISDLERQLRECRGNAT-EIS 695
Query: 199 KLFLKCSNLERSL 237
+L + ++LER L
Sbjct: 696 RLQYRITDLERQL 708
Score = 34.7 bits (78), Expect = 0.17
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Frame = +1
Query: 97 NDDMLKTIQRLKLEVKEAQTFAVKCKGDAN----EEINKLFLKCSNLERSLFTESDENKK 264
N DM + +QRL+ + + +CK D N EE+N+L + +LERSL S + +
Sbjct: 749 NADMEREMQRLRDRIMDLDRQLNECKRDGNGTSSEEVNRLKTRIRDLERSLEICSKDESE 808
Query: 265 LRIKLSRYCGPTPPRNQSSTLNHNTKDRPPSRQSGFSDS 381
L G R Q S L + + R+S +DS
Sbjct: 809 LYSAYKSELGRA--REQISNLQESLR---RERESDKTDS 842
>sp|P24759|ATI1_VACCV 94 kDa A-type inclusion protein (ATI)
Length = 724
Score = 33.5 bits (75), Expect = 0.38
Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Frame = +1
Query: 40 QSMDQVDLLKHRIRILETENDDMLKT-------IQRLKLEVKEAQTFAVKCKGDANEEIN 198
+ +VD L+ RIR LE + D +++ I RL+ ++ + + +C+ +A EI+
Sbjct: 634 EDTQEVDALRSRIRELENKLTDCIESGGGNLTEISRLQSKISDLERQLSECRENAT-EIS 692
Query: 199 KLFLKCSNLERSL 237
+L + S+LER L
Sbjct: 693 RLQSRISDLERQL 705
>sp|Q6ZU80|CN145_HUMAN Protein C14orf145
Length = 623
Score = 33.1 bits (74), Expect = 0.49
Identities = 23/85 (27%), Positives = 40/85 (47%)
Frame = +1
Query: 22 QVIESTQSMDQVDLLKHRIRILETENDDMLKTIQRLKLEVKEAQTFAVKCKGDANEEINK 201
Q +++ + +L+KH + E + I+ LK E E + A +G ++ K
Sbjct: 341 QSVKTKHEQNIQELMKH----FKKEKSEAENHIRTLKAESLEEKNMAKIHRG----QLEK 392
Query: 202 LFLKCSNLERSLFTESDENKKLRIK 276
L +C L L +ENKKL++K
Sbjct: 393 LKSQCDRLTEELTQNENENKKLKLK 417
>sp|Q92351|PCP1_SCHPO Spindle pole body protein pcp1
Length = 1208
Score = 32.7 bits (73), Expect = 0.64
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +1
Query: 10 TLGHQVIESTQSMDQVDLLKHRIRILETENDD--MLKTIQRLKLEVKEAQTFAVKCKGDA 183
+LG+Q+ ++D K+ +R+L ++N D + +T RL+ KE +T +K D
Sbjct: 460 SLGNQIESLRTQNREIDEEKNHLRLLASKNSDKALAETNIRLQEVTKELETLRMKNSNDL 519
Query: 184 NE 189
NE
Sbjct: 520 NE 521
>sp|Q8VD04|GRAP1_MOUSE GRIP1-associated protein 1 (GRASP-1) (HCMV-interacting protein)
Length = 806
Score = 32.0 bits (71), Expect = 1.1
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 3/136 (2%)
Frame = +1
Query: 49 DQVDLLKHRIRILETENDDMLKTIQRLKLEVK---EAQTFAVKCKGDANEEINKLFLKCS 219
+++ ++ +++ + E D +KTI LK EVK + Q K KG A
Sbjct: 528 EELQNVREQLQQAQEERDGHVKTISNLKQEVKDTVDGQRILEK-KGSA---------VLK 577
Query: 220 NLERSLFTESDENKKLRIKLSRYCGPTPPRNQSSTLNHNTKDRPPSRQSGFSDSLGTFAP 399
+L+R L E KL+ +L + R L + + P Q+G S S+ +F+
Sbjct: 578 DLKRQLHLERKRADKLQERLQEILTNSKSRTGLEELVLSEMNSPSRTQTGDSSSVSSFSY 637
Query: 400 LPFIPFTPQSPTPNNS 447
+ S P S
Sbjct: 638 REILKEKESSAIPARS 653
>sp|Q9UTJ8|RAD50_SCHPO DNA repair protein rad50
Length = 1290
Score = 32.0 bits (71), Expect = 1.1
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +1
Query: 31 ESTQSMDQVDLLKHRIRILETENDDMLKTIQRLKLEVKEAQTF--AVKCKGDANEEINKL 204
E+ D+++LL R+ +TE D+ +Q L + E Q+ + + E++ L
Sbjct: 723 EAKPIFDEIELLDKRLSETKTELSDLQGDLQGLDIRKDEIQSELDTLYLRRANLEKLQLL 782
Query: 205 FLKCSNLERSLFTESDENKKLRIKL 279
SNLE + T E + LRI+L
Sbjct: 783 VKDISNLEEEIRTIDRETEVLRIEL 807
>sp|Q9M9F9|Y1843_ARATH Hypothetical protein At1g78430
Length = 326
Score = 31.6 bits (70), Expect = 1.4
Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 17/103 (16%)
Frame = +1
Query: 31 ESTQSMDQVDLLKHRIRILETENDDMLKTIQRLKLEVKEAQT--FAVKCKGD-------- 180
E DQ+++LK R+ LE E + + + LK ++K+ T K K D
Sbjct: 153 ELASKEDQINVLKARLYDLEKERVSLSEENETLKDQLKKTDTEMSCAKAKEDEIASKVSQ 212
Query: 181 -------ANEEINKLFLKCSNLERSLFTESDENKKLRIKLSRY 288
+NE KL K ++E + T E KKL+++ ++
Sbjct: 213 IGEELEESNETTAKLKKKLESVEEAKETLEAEMKKLKVQTEQW 255
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,650,916
Number of Sequences: 369166
Number of extensions: 1040597
Number of successful extensions: 3077
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3066
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4127973360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)