Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01424
(261 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6EIK6|MATK_GOSHI Maturase K (Intron maturase) 30 1.7
sp|Q7HTB5|MATK_GOSSC Maturase K (Intron maturase) >gi|68052... 30 1.7
sp|Q6EIH3|MATK_TILAM Maturase K (Intron maturase) 30 1.7
sp|Q95EF3|MATK_KOKDR Maturase K (Intron maturase) 30 1.7
sp|Q6EIJ2|MATK_OCHPY Maturase K (Intron maturase) 29 2.9
sp|Q6EIJ9|MATK_FRECA Maturase K (Intron maturase) 29 2.9
sp|Q6EIK1|MATK_PENDO Maturase K (Intron maturase) 29 2.9
sp|Q06805|TIE1_BOVIN Tyrosine-protein kinase receptor Tie-1... 29 3.8
sp|Q6EIG9|MATK_THECC Maturase K (Intron maturase) 28 4.9
sp|Q6EIJ6|MATK_ADADI Maturase K (Intron maturase) 28 4.9
>sp|Q6EIK6|MATK_GOSHI Maturase K (Intron maturase)
Length = 504
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +1
Query: 46 EFLPPKPIHAPINNTKLAYKNSPLSE----QLGLGNQAYMINSVTPKSAISINNHTDIVE 213
E L P PIH I L Y S + L + + +TPK +ISI N +
Sbjct: 148 EALIPHPIHLEILVQALRYWVKDASSLHLLRFSLYEYCNLKSFITPKKSISIFNPRLFLF 207
Query: 214 MYNSNMC 234
+YNS+ C
Sbjct: 208 LYNSHTC 214
>sp|Q7HTB5|MATK_GOSSC Maturase K (Intron maturase)
sp|Q95EF8|MATK_GOSGO Maturase K (Intron maturase)
Length = 504
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +1
Query: 46 EFLPPKPIHAPINNTKLAYKNSPLSE----QLGLGNQAYMINSVTPKSAISINNHTDIVE 213
E L P PIH I L Y S + L + + +TPK +ISI N +
Sbjct: 148 EALIPHPIHLEILVQALRYWVKDASSLHLLRFSLYEYCNLKSFITPKKSISIFNPRLFLF 207
Query: 214 MYNSNMC 234
+YNS+ C
Sbjct: 208 LYNSHTC 214
>sp|Q6EIH3|MATK_TILAM Maturase K (Intron maturase)
Length = 502
Score = 30.0 bits (66), Expect = 1.7
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Frame = +1
Query: 46 EFLPPKPIHAPINNTKLAYKNSPLSE----QLGLGNQAYMINSVTPKSAISINNHTDIVE 213
+ L P PIH I L Y S + L + + +TPK +ISI N +
Sbjct: 148 DVLIPHPIHLEILVQALRYWVKDASSLHLLRFSLYEYCNLKSFITPKKSISIFNPRLFLF 207
Query: 214 MYNSNMC 234
+YNS++C
Sbjct: 208 LYNSHVC 214
>sp|Q95EF3|MATK_KOKDR Maturase K (Intron maturase)
Length = 504
Score = 30.0 bits (66), Expect = 1.7
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +1
Query: 46 EFLPPKPIHAPINNTKLAYKNSPLSE----QLGLGNQAYMINSVTPKSAISINNHTDIVE 213
E L P PIH I L Y S + L + + +TPK +ISI N +
Sbjct: 148 EALIPHPIHLEILVQALRYWVKDASSLHLLRFSLYEYCNLKSFITPKKSISIFNPRLFLF 207
Query: 214 MYNSNMC 234
+YNS+ C
Sbjct: 208 LYNSHAC 214
>sp|Q6EIJ2|MATK_OCHPY Maturase K (Intron maturase)
Length = 504
Score = 29.3 bits (64), Expect = 2.9
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +1
Query: 46 EFLPPKPIHAPINNTKLAYKNSPLSE----QLGLGNQAYMINSVTPKSAISINNHTDIVE 213
+ L P PIH I L Y S + L + + +TPK +ISI N +
Sbjct: 148 DVLIPHPIHLEILVQALRYWVKDASSLHLLRFSLYEYCNLKSFITPKKSISIFNPRLFLF 207
Query: 214 MYNSNMC 234
+YNS+ C
Sbjct: 208 LYNSHAC 214
>sp|Q6EIJ9|MATK_FRECA Maturase K (Intron maturase)
Length = 502
Score = 29.3 bits (64), Expect = 2.9
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +1
Query: 46 EFLPPKPIHAPINNTKLAYKNSPLSE----QLGLGNQAYMINSVTPKSAISINNHTDIVE 213
+ L P PIH I L Y S + L + + +TPK +ISI N +
Sbjct: 148 DVLIPHPIHLEILVQALRYWVKDASSLHLLRFSLYEYCNLKSFITPKKSISILNPRLFLF 207
Query: 214 MYNSNMC 234
+YNS+ C
Sbjct: 208 LYNSHAC 214
>sp|Q6EIK1|MATK_PENDO Maturase K (Intron maturase)
Length = 504
Score = 29.3 bits (64), Expect = 2.9
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +1
Query: 46 EFLPPKPIHAPINNTKLAYKNSPLSE----QLGLGNQAYMINSVTPKSAISINNHTDIVE 213
+ L P PIH I L Y S + L + + +TPK +ISI N +
Sbjct: 148 DVLIPHPIHLEILVQALRYWVKDASSLHLLRFSLYEYCNLKSFITPKKSISIFNPRLFLF 207
Query: 214 MYNSNMC 234
+YNS+ C
Sbjct: 208 LYNSHAC 214
>sp|Q06805|TIE1_BOVIN Tyrosine-protein kinase receptor Tie-1 precursor
Length = 1136
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 58 PKPIHAPINNTKLAYKNSPLSEQLGLGNQAYMINSVTPKSAISINNHTDIVEMYNS 225
PKP P+N L +++ + +G GN +I ++ K + +N +++ Y S
Sbjct: 820 PKPQPEPLNYPVLEWEDITFEDLIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEYAS 875
>sp|Q6EIG9|MATK_THECC Maturase K (Intron maturase)
Length = 502
Score = 28.5 bits (62), Expect = 4.9
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +1
Query: 46 EFLPPKPIHAPINNTKLAYKNSPLSE----QLGLGNQAYMINSVTPKSAISINNHTDIVE 213
+ L P PIH I L Y S + L + + TPK +ISI N +
Sbjct: 148 DVLIPHPIHLEILVQALRYWVKDASSLHLLRFSLYEYCNLKSFFTPKKSISIFNPRLFLF 207
Query: 214 MYNSNMC 234
+YNS++C
Sbjct: 208 LYNSHVC 214
>sp|Q6EIJ6|MATK_ADADI Maturase K (Intron maturase)
Length = 504
Score = 28.5 bits (62), Expect = 4.9
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +1
Query: 46 EFLPPKPIHAPINNTKLAYKNSPLSE----QLGLGNQAYMINSVTPKSAISINNHTDIVE 213
+ L P PIH I L Y S + L + + +TPK +ISI N
Sbjct: 148 DVLIPHPIHLEILVQALRYWVKDASSLHLLRFSLYEYCNLKSFITPKKSISIFNPRLFFF 207
Query: 214 MYNSNMC 234
+YNS+ C
Sbjct: 208 LYNSHAC 214
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.309 0.126 0.354
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,087,221
Number of Sequences: 369166
Number of extensions: 487547
Number of successful extensions: 705
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)