Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01413
(751 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UNL2|SSRG_HUMAN Translocon-associated protein gamma su... 187 3e-47
sp|Q9DCF9|SSRG_MOUSE Translocon-associated protein gamma su... 187 3e-47
sp|Q5RCD7|SSRG_PONPY Translocon-associated protein, gamma s... 187 3e-47
sp|Q8NXE8|CDR_STAAW Coenzyme A disulfide reductase (CoA-dis... 33 0.82
sp|Q6GIB7|CDR_STAAR Coenzyme A disulfide reductase (CoA-dis... 33 0.82
sp|Q99VC0|CDR_STAAM Coenzyme A disulfide reductase (CoA-dis... 33 0.82
sp|O52582|CDR_STAAU Coenzyme A disulfide reductase (CoA-dis... 33 0.82
sp|Q05022|RRP5_YEAST rRNA biogenesis protein RRP5 32 1.4
sp|Q5HHB4|CDR_STAAC Coenzyme A disulfide reductase (CoA-dis... 32 2.4
sp|P46142|YGGM_ECOLI Hypothetical protein yggM 30 5.3
>sp|Q9UNL2|SSRG_HUMAN Translocon-associated protein gamma subunit (TRAP-gamma) (Signal
sequence receptor gamma subunit) (SSR-gamma)
Length = 185
Score = 187 bits (474), Expect = 3e-47
Identities = 92/177 (51%), Positives = 127/177 (71%), Gaps = 2/177 (1%)
Frame = +1
Query: 10 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSNAVPFIIGSI 189
K EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI MD++ +AV + + ++
Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTL 67
Query: 190 ISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLSRKEKDDRILWKKNE 363
+S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K+SRKEKD+RILWKKNE
Sbjct: 68 VSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNE 127
Query: 364 VADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 534
VAD+E+TT +N +NY LS+ +++ L+AL STGS
Sbjct: 128 VADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 184
>sp|Q9DCF9|SSRG_MOUSE Translocon-associated protein gamma subunit (TRAP-gamma) (Signal
sequence receptor gamma subunit) (SSR-gamma)
sp|Q08013|SSRG_RAT Translocon-associated protein, gamma subunit (TRAP-gamma) (Signal
sequence receptor gamma subunit) (SSR-gamma)
Length = 185
Score = 187 bits (474), Expect = 3e-47
Identities = 92/177 (51%), Positives = 127/177 (71%), Gaps = 2/177 (1%)
Frame = +1
Query: 10 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSNAVPFIIGSI 189
K EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI MD++ +AV + + ++
Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTL 67
Query: 190 ISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLSRKEKDDRILWKKNE 363
+S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K+SRKEKD+RILWKKNE
Sbjct: 68 VSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNE 127
Query: 364 VADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 534
VAD+E+TT +N +NY LS+ +++ L+AL STGS
Sbjct: 128 VADYEATTFSIFYNNTLFLVLVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 184
>sp|Q5RCD7|SSRG_PONPY Translocon-associated protein, gamma subunit (TRAP-gamma) (Signal
sequence receptor gamma subunit) (SSR-gamma)
Length = 185
Score = 187 bits (474), Expect = 3e-47
Identities = 92/177 (51%), Positives = 127/177 (71%), Gaps = 2/177 (1%)
Frame = +1
Query: 10 KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSNAVPFIIGSI 189
K EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI MD++ +AV + + ++
Sbjct: 8 KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTL 67
Query: 190 ISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLSRKEKDDRILWKKNE 363
+S YLVA AYKN KF+LKHK+A KREDA+++E+ +K D++K+SRKEKD+RILWKKNE
Sbjct: 68 VSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNE 127
Query: 364 VADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 534
VAD+E+TT +N +NY LS+ +++ L+AL STGS
Sbjct: 128 VADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 184
>sp|Q8NXE8|CDR_STAAW Coenzyme A disulfide reductase (CoA-disulfide reductase) (CoADR)
sp|Q6GAV6|CDR_STAAS Coenzyme A disulfide reductase (CoA-disulfide reductase) (CoADR)
Length = 438
Score = 33.1 bits (74), Expect = 0.82
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 118 IWLFWRIHDMDIMSNAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVK 261
I +F + DM + A+P++IG ++ A+AY KF + +I VK
Sbjct: 29 IIIFEKDRDMSFANCALPYVIGEVVEDRKYALAYTPEKFYDRKQITVK 76
>sp|Q6GIB7|CDR_STAAR Coenzyme A disulfide reductase (CoA-disulfide reductase) (CoADR)
Length = 438
Score = 33.1 bits (74), Expect = 0.82
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 118 IWLFWRIHDMDIMSNAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVK 261
I +F + DM + A+P++IG ++ A+AY KF + +I VK
Sbjct: 29 IIIFEKDRDMSFANCALPYVIGEVVEDRKYALAYTPEKFYDRKQITVK 76
>sp|Q99VC0|CDR_STAAM Coenzyme A disulfide reductase (CoA-disulfide reductase) (CoADR)
sp|Q7A6H1|CDR_STAAN Coenzyme A disulfide reductase (CoA-disulfide reductase) (CoADR)
Length = 438
Score = 33.1 bits (74), Expect = 0.82
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 118 IWLFWRIHDMDIMSNAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVK 261
I +F + DM + A+P++IG ++ A+AY KF + +I VK
Sbjct: 29 IIIFEKDRDMSFANCALPYVIGEVVEDRKYALAYTPEKFYDRKQITVK 76
>sp|O52582|CDR_STAAU Coenzyme A disulfide reductase (CoA-disulfide reductase) (CoADR)
Length = 438
Score = 33.1 bits (74), Expect = 0.82
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 118 IWLFWRIHDMDIMSNAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVK 261
I +F + DM + A+P++IG ++ A+AY KF + +I VK
Sbjct: 29 IIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVK 76
>sp|Q05022|RRP5_YEAST rRNA biogenesis protein RRP5
Length = 1729
Score = 32.3 bits (72), Expect = 1.4
Identities = 26/105 (24%), Positives = 47/105 (44%)
Frame = +1
Query: 25 EEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSNAVPFIIGSIISAYL 204
+++ + + +S+S K + + FI +LP + D+DI F I ++ YL
Sbjct: 793 KDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAV-DSRDIDISK---AFYINQSVTVYL 848
Query: 205 VAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLSRKEKDD 339
+ KN KF+L K +E+ +++ D S K DD
Sbjct: 849 LRTDDKNQKFLLSLKAPKVKEE--KKKVESNIEDPVDSSIKSWDD 891
>sp|Q5HHB4|CDR_STAAC Coenzyme A disulfide reductase (CoA-disulfide reductase) (CoADR)
Length = 438
Score = 31.6 bits (70), Expect = 2.4
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 118 IWLFWRIHDMDIMSNAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVK 261
I +F + DM + A+P++IG ++ A+AY +F + +I VK
Sbjct: 29 IIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEEFYDRKQITVK 76
>sp|P46142|YGGM_ECOLI Hypothetical protein yggM
Length = 335
Score = 30.4 bits (67), Expect = 5.3
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +1
Query: 205 VAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLSRKEKDDRILWKKNE 363
+A +K ++ + I KR+ IN + + F +KLSRK +DD + +K +
Sbjct: 238 IAACHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLSRKLQDDWVTLEKGQ 290
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,702,134
Number of Sequences: 369166
Number of extensions: 1454538
Number of successful extensions: 3828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3821
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6824907600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)