Planaria EST Database


DrC_01413

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01413
         (751 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9UNL2|SSRG_HUMAN  Translocon-associated protein gamma su...   187   3e-47
sp|Q9DCF9|SSRG_MOUSE  Translocon-associated protein gamma su...   187   3e-47
sp|Q5RCD7|SSRG_PONPY  Translocon-associated protein, gamma s...   187   3e-47
sp|Q8NXE8|CDR_STAAW  Coenzyme A disulfide reductase (CoA-dis...    33   0.82 
sp|Q6GIB7|CDR_STAAR  Coenzyme A disulfide reductase (CoA-dis...    33   0.82 
sp|Q99VC0|CDR_STAAM  Coenzyme A disulfide reductase (CoA-dis...    33   0.82 
sp|O52582|CDR_STAAU  Coenzyme A disulfide reductase (CoA-dis...    33   0.82 
sp|Q05022|RRP5_YEAST  rRNA biogenesis protein RRP5                 32   1.4  
sp|Q5HHB4|CDR_STAAC  Coenzyme A disulfide reductase (CoA-dis...    32   2.4  
sp|P46142|YGGM_ECOLI  Hypothetical protein yggM                    30   5.3  
>sp|Q9UNL2|SSRG_HUMAN Translocon-associated protein gamma subunit (TRAP-gamma) (Signal
           sequence receptor gamma subunit) (SSR-gamma)
          Length = 185

 Score =  187 bits (474), Expect = 3e-47
 Identities = 92/177 (51%), Positives = 127/177 (71%), Gaps = 2/177 (1%)
 Frame = +1

Query: 10  KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSNAVPFIIGSI 189
           K   EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI  MD++ +AV + + ++
Sbjct: 8   KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTL 67

Query: 190 ISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLSRKEKDDRILWKKNE 363
           +S YLVA AYKN KF+LKHK+A KREDA+++E+ +K    D++K+SRKEKD+RILWKKNE
Sbjct: 68  VSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNE 127

Query: 364 VADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 534
           VAD+E+TT                      +N    +NY LS+ +++ L+AL STGS
Sbjct: 128 VADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 184
>sp|Q9DCF9|SSRG_MOUSE Translocon-associated protein gamma subunit (TRAP-gamma) (Signal
           sequence receptor gamma subunit) (SSR-gamma)
 sp|Q08013|SSRG_RAT Translocon-associated protein, gamma subunit (TRAP-gamma) (Signal
           sequence receptor gamma subunit) (SSR-gamma)
          Length = 185

 Score =  187 bits (474), Expect = 3e-47
 Identities = 92/177 (51%), Positives = 127/177 (71%), Gaps = 2/177 (1%)
 Frame = +1

Query: 10  KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSNAVPFIIGSI 189
           K   EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI  MD++ +AV + + ++
Sbjct: 8   KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTL 67

Query: 190 ISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLSRKEKDDRILWKKNE 363
           +S YLVA AYKN KF+LKHK+A KREDA+++E+ +K    D++K+SRKEKD+RILWKKNE
Sbjct: 68  VSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNE 127

Query: 364 VADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 534
           VAD+E+TT                      +N    +NY LS+ +++ L+AL STGS
Sbjct: 128 VADYEATTFSIFYNNTLFLVLVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 184
>sp|Q5RCD7|SSRG_PONPY Translocon-associated protein, gamma subunit (TRAP-gamma) (Signal
           sequence receptor gamma subunit) (SSR-gamma)
          Length = 185

 Score =  187 bits (474), Expect = 3e-47
 Identities = 92/177 (51%), Positives = 127/177 (71%), Gaps = 2/177 (1%)
 Frame = +1

Query: 10  KLSKEEEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSNAVPFIIGSI 189
           K   EE++LLQDFSR++S KSSALF+GNAFIVS +PIWL+WRI  MD++ +AV + + ++
Sbjct: 8   KQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAVLYSVMTL 67

Query: 190 ISAYLVAMAYKNTKFILKHKIAVKREDAINREMNKKF--GDDKKLSRKEKDDRILWKKNE 363
           +S YLVA AYKN KF+LKHK+A KREDA+++E+ +K    D++K+SRKEKD+RILWKKNE
Sbjct: 68  VSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDERILWKKNE 127

Query: 364 VADFESTTXXXXXXXXXXXXXXXXXXXXXXRNQALLLNYALSMGSAAALVALFSTGS 534
           VAD+E+TT                      +N    +NY LS+ +++ L+AL STGS
Sbjct: 128 VADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTVNYILSISASSGLIALLSTGS 184
>sp|Q8NXE8|CDR_STAAW Coenzyme A disulfide reductase (CoA-disulfide reductase) (CoADR)
 sp|Q6GAV6|CDR_STAAS Coenzyme A disulfide reductase (CoA-disulfide reductase) (CoADR)
          Length = 438

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 118 IWLFWRIHDMDIMSNAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVK 261
           I +F +  DM   + A+P++IG ++     A+AY   KF  + +I VK
Sbjct: 29  IIIFEKDRDMSFANCALPYVIGEVVEDRKYALAYTPEKFYDRKQITVK 76
>sp|Q6GIB7|CDR_STAAR Coenzyme A disulfide reductase (CoA-disulfide reductase) (CoADR)
          Length = 438

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 118 IWLFWRIHDMDIMSNAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVK 261
           I +F +  DM   + A+P++IG ++     A+AY   KF  + +I VK
Sbjct: 29  IIIFEKDRDMSFANCALPYVIGEVVEDRKYALAYTPEKFYDRKQITVK 76
>sp|Q99VC0|CDR_STAAM Coenzyme A disulfide reductase (CoA-disulfide reductase) (CoADR)
 sp|Q7A6H1|CDR_STAAN Coenzyme A disulfide reductase (CoA-disulfide reductase) (CoADR)
          Length = 438

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 118 IWLFWRIHDMDIMSNAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVK 261
           I +F +  DM   + A+P++IG ++     A+AY   KF  + +I VK
Sbjct: 29  IIIFEKDRDMSFANCALPYVIGEVVEDRKYALAYTPEKFYDRKQITVK 76
>sp|O52582|CDR_STAAU Coenzyme A disulfide reductase (CoA-disulfide reductase) (CoADR)
          Length = 438

 Score = 33.1 bits (74), Expect = 0.82
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 118 IWLFWRIHDMDIMSNAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVK 261
           I +F +  DM   + A+P++IG ++     A+AY   KF  + +I VK
Sbjct: 29  IIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVK 76
>sp|Q05022|RRP5_YEAST rRNA biogenesis protein RRP5
          Length = 1729

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 26/105 (24%), Positives = 47/105 (44%)
 Frame = +1

Query: 25   EEILLQDFSRSVSTKSSALFYGNAFIVSILPIWLFWRIHDMDIMSNAVPFIIGSIISAYL 204
            +++ +  + +S+S K   + +   FI  +LP +      D+DI      F I   ++ YL
Sbjct: 793  KDVPMHAYIKSISDKGLFVAFNGKFIGLVLPSYAV-DSRDIDISK---AFYINQSVTVYL 848

Query: 205  VAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLSRKEKDD 339
            +    KN KF+L  K    +E+   +++     D    S K  DD
Sbjct: 849  LRTDDKNQKFLLSLKAPKVKEE--KKKVESNIEDPVDSSIKSWDD 891
>sp|Q5HHB4|CDR_STAAC Coenzyme A disulfide reductase (CoA-disulfide reductase) (CoADR)
          Length = 438

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 118 IWLFWRIHDMDIMSNAVPFIIGSIISAYLVAMAYKNTKFILKHKIAVK 261
           I +F +  DM   + A+P++IG ++     A+AY   +F  + +I VK
Sbjct: 29  IIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEEFYDRKQITVK 76
>sp|P46142|YGGM_ECOLI Hypothetical protein yggM
          Length = 335

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = +1

Query: 205 VAMAYKNTKFILKHKIAVKREDAINREMNKKFGDDKKLSRKEKDDRILWKKNE 363
           +A  +K ++   +  I  KR+  IN +  + F   +KLSRK +DD +  +K +
Sbjct: 238 IAACHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLSRKLQDDWVTLEKGQ 290
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,702,134
Number of Sequences: 369166
Number of extensions: 1454538
Number of successful extensions: 3828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3821
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6824907600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)