Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01412
(279 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7VLQ4|TGT_HAEDU Queuine tRNA-ribosyltransferase (tRNA-g... 33 0.16
sp|Q8N128|CN024_HUMAN Protein C14orf24 33 0.27
sp|Q8BR63|CN024_MOUSE Protein C14orf24 homolog 33 0.27
sp|P44594|TGT_HAEIN Queuine tRNA-ribosyltransferase (tRNA-g... 31 1.0
sp|Q6FEJ4|TGT_ACIAD Queuine tRNA-ribosyltransferase (tRNA-g... 31 1.0
sp|P57831|TGT_PASMU Queuine tRNA-ribosyltransferase (tRNA-g... 31 1.0
sp|Q8MSX1|ENC_DROME Encore protein 30 1.3
sp|Q60365|Y056_METJA Hypothetical protein MJ0056 29 3.9
sp|Q65S94|TGT_MANSM Queuine tRNA-ribosyltransferase (tRNA-g... 28 5.0
sp|P47437|SYFB_MYCGE Phenylalanyl-tRNA synthetase beta chai... 28 6.6
>sp|Q7VLQ4|TGT_HAEDU Queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase)
(Guanine insertion enzyme)
Length = 382
Score = 33.5 bits (75), Expect = 0.16
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +2
Query: 20 SDGVIDVNKFKYVNNSSDFK-----FTSKSWFNLILYYIDYCGERL 142
SDGV+ + KY N+++ +T K++ LY++D CGE L
Sbjct: 285 SDGVVKIRNAKYKNDTTPLDAECDCYTCKNYTKAYLYHLDKCGEIL 330
>sp|Q8N128|CN024_HUMAN Protein C14orf24
Length = 213
Score = 32.7 bits (73), Expect = 0.27
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Frame = +2
Query: 95 WFNLI------LYYIDYCGERLAWFFGITSPKYDYILNEVQR 202
WF ++ L D+ GE++A GI++PKY Y ++E R
Sbjct: 100 WFYMLRAATSTLSVCDFLGEKIASVLGISTPKYQYAIDEYYR 141
>sp|Q8BR63|CN024_MOUSE Protein C14orf24 homolog
Length = 207
Score = 32.7 bits (73), Expect = 0.27
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
Frame = +2
Query: 95 WFNLI------LYYIDYCGERLAWFFGITSPKYDYILNEVQR 202
WF ++ L D+ GE++A GI++PKY Y ++E R
Sbjct: 95 WFYMLRAATSTLSVCDFLGEKIASVLGISTPKYQYAIDEYYR 136
>sp|P44594|TGT_HAEIN Queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase)
(Guanine insertion enzyme)
Length = 382
Score = 30.8 bits (68), Expect = 1.0
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +2
Query: 20 SDGVIDVNKFKYVNNSSDFK-----FTSKSWFNLILYYIDYCGERL 142
+DG++ + KY +++S +T K++ LY++D CGE L
Sbjct: 284 TDGIVKIRNAKYRDDTSPLDPECDCYTCKNYTKAYLYHLDKCGEIL 329
>sp|Q6FEJ4|TGT_ACIAD Queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase)
(Guanine insertion enzyme)
Length = 386
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +2
Query: 20 SDGVIDVNKFKYVNNSSDFK-----FTSKSWFNLILYYIDYCGERLAWFFG 157
+DG++ + KY ++ S +T K++ LY+++ CGE LA G
Sbjct: 291 TDGLVRIRNSKYRHDQSPLDPHCDCYTCKNFTRAYLYHLEKCGEMLASMLG 341
>sp|P57831|TGT_PASMU Queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase)
(Guanine insertion enzyme)
Length = 385
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +2
Query: 20 SDGVIDVNKFKYVNNSSDFK-----FTSKSWFNLILYYIDYCGERL 142
SDG++ + KY ++S +T K + LY++D CGE L
Sbjct: 284 SDGIVKIRNAKYREDTSPLDPECDCYTCKHYTKAYLYHLDKCGEIL 329
>sp|Q8MSX1|ENC_DROME Encore protein
Length = 1818
Score = 30.4 bits (67), Expect = 1.3
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Frame = +2
Query: 59 NNSSDFKFTSKSWFNLILYYIDYCGERLAWFFGIT---SPKYDYILNEVQRELLSTASDN 229
NNSS+ S N Y DY G L FF T +PK IL +++++L+ +N
Sbjct: 402 NNSSNNTSGFISRENSSEQYTDYGGTDLLVFFRDTLNKNPKDRNILLKIEKDLIDFVQEN 461
Query: 230 DDGC 241
GC
Sbjct: 462 SRGC 465
>sp|Q60365|Y056_METJA Hypothetical protein MJ0056
Length = 136
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 23 DGVIDVNKFKYVNNSSDFKFTSKSWFNL 106
D D+NKFKY+ + DF+F K +F +
Sbjct: 49 DREFDINKFKYI-ETEDFEFNGKRFFGV 75
>sp|Q65S94|TGT_MANSM Queuine tRNA-ribosyltransferase (tRNA-guanine transglycosylase)
(Guanine insertion enzyme)
Length = 379
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Frame = +2
Query: 20 SDGVIDVNKFKYVNNSSDFK-----FTSKSWFNLILYYIDYCGERL 142
+DG++ + KY +++S +T + + LY++D CGE L
Sbjct: 284 TDGIVKIRNAKYKDDTSPLDPHCDCYTCQHYTKSYLYHLDKCGEIL 329
>sp|P47437|SYFB_MYCGE Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 806
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 29 VIDVNKFKYVNNSSDFKFTSKSWFN 103
+ID+NK K + +S F F S+FN
Sbjct: 479 LIDINKLKPIGITSSFNFEKSSYFN 503
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,328,338
Number of Sequences: 369166
Number of extensions: 518939
Number of successful extensions: 1212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 68,354,980
effective HSP length: 62
effective length of database: 56,901,410
effective search space used: 1707042300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)