Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01401
(825 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79136|CAPZB_BOVIN F-actin capping protein beta subunit ... 336 5e-92
sp|P48603|CAPZB_DROME F-actin capping protein beta subunit 330 3e-90
sp|P47757|CAPZB_MOUSE F-actin capping protein beta subunit ... 329 5e-90
sp|P47756|CAPZB_HUMAN F-actin capping protein beta subunit ... 329 5e-90
sp|P14315|CAPZB_CHICK F-actin capping protein beta subunit ... 328 8e-90
sp|P34686|CAPZB_CAEEL F-actin capping protein beta subunit 301 2e-81
sp|P13021|CAPZB_DICDI F-actin capping protein beta subunit ... 259 5e-69
sp|Q9HGP5|CAPZB_SCHPO Probable F-actin capping protein beta... 233 6e-61
sp|Q9M9G7|CAPZB_ARATH Probable F-actin capping protein beta... 208 1e-53
sp|P13517|CAPZB_YEAST F-actin capping protein beta subunit 186 9e-47
>sp|P79136|CAPZB_BOVIN F-actin capping protein beta subunit (CapZ beta)
Length = 301
Score = 336 bits (861), Expect = 5e-92
Identities = 165/262 (62%), Positives = 202/262 (77%), Gaps = 14/262 (5%)
Frame = +1
Query: 1 LDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDYNRDGD 180
LDLMRRLPPQ+I+K+L DLI+LVP LCEDLLSSVDQPLKI++D GKDYLL DYNRDGD
Sbjct: 39 LDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGD 98
Query: 181 SYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSGFA 360
SYRSPWSN YDPPLEDG++PS R+R LE+EAN AF+ YR++Y++GGVSSVYLWDLD GFA
Sbjct: 99 SYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFA 158
Query: 361 GAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNS------- 516
G +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T S
Sbjct: 159 GVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNL 218
Query: 517 ------ETEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRSGLSK 678
+ EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K++V+ LRS +
Sbjct: 219 GGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRSVQTF 278
Query: 679 SVEDQQRKLCQDVKIAIQNKNQ 744
+ + +Q L D+ A++ K Q
Sbjct: 279 ADKSKQEALKNDLVEALKRKQQ 300
>sp|P48603|CAPZB_DROME F-actin capping protein beta subunit
Length = 276
Score = 330 bits (846), Expect = 3e-90
Identities = 164/261 (62%), Positives = 201/261 (77%), Gaps = 14/261 (5%)
Frame = +1
Query: 1 LDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDYNRDGD 180
LDLMRRLPPQ+I+K+L DLI+L PDLCEDLLSSVDQPLKI+KD + GKDYLL DYNRDGD
Sbjct: 10 LDLMRRLPPQQIEKNLIDLIDLAPDLCEDLLSSVDQPLKIAKDKEHGKDYLLCDYNRDGD 69
Query: 181 SYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSGFA 360
SYRSPWSNSY PPLEDG +PS+R+R LEIEAN AF+ YREMYY+GGVSSVYLWDLD GFA
Sbjct: 70 SYRSPWSNSYYPPLEDGQMPSERLRKLEIEANYAFDQYREMYYEGGVSSVYLWDLDHGFA 129
Query: 361 GAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNS------- 516
+LIKKAGD K GCWDSIHV+EV+EK +GR A YKLTST MLWL+T
Sbjct: 130 AVILIKKAGDGSKMIRGCWDSIHVVEVQEKTTGRTAHYKLTSTAMLWLQTNKQGSGTMNL 189
Query: 517 ------ETEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRSGLSK 678
+ E++ +S+++ HI NIG++VE+MEN IR LN++YFG +K++V+ LRS S
Sbjct: 190 GGSLTRQQEQDANVSESSPHIANIGKMVEEMENKIRNTLNEIYFGKTKDIVNGLRSTQSL 249
Query: 679 SVEDQQRKLCQDVKIAIQNKN 741
+ + QQ + QD+ AI +N
Sbjct: 250 ADQRQQAAMKQDLAAAILRRN 270
>sp|P47757|CAPZB_MOUSE F-actin capping protein beta subunit (CapZ beta)
Length = 277
Score = 329 bits (844), Expect = 5e-90
Identities = 159/236 (67%), Positives = 189/236 (80%), Gaps = 14/236 (5%)
Frame = +1
Query: 1 LDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDYNRDGD 180
LDLMRRLPPQ+I+K+L DLI+LVP LCEDLLSSVDQPLKI++D GKDYLL DYNRDGD
Sbjct: 10 LDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGD 69
Query: 181 SYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSGFA 360
SYRSPWSN YDPPLEDG++PS R+R LE+EAN AF+ YR++Y++GGVSSVYLWDLD GFA
Sbjct: 70 SYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFA 129
Query: 361 GAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNS------- 516
G +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T S
Sbjct: 130 GVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNL 189
Query: 517 ------ETEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRS 666
+ EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K++V+ LRS
Sbjct: 190 GGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRS 245
>sp|P47756|CAPZB_HUMAN F-actin capping protein beta subunit (CapZ beta)
Length = 277
Score = 329 bits (844), Expect = 5e-90
Identities = 159/236 (67%), Positives = 189/236 (80%), Gaps = 14/236 (5%)
Frame = +1
Query: 1 LDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDYNRDGD 180
LDLMRRLPPQ+I+K+L DLI+LVP LCEDLLSSVDQPLKI++D GKDYLL DYNRDGD
Sbjct: 10 LDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGD 69
Query: 181 SYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSGFA 360
SYRSPWSN YDPPLEDG++PS R+R LE+EAN AF+ YR++Y++GGVSSVYLWDLD GFA
Sbjct: 70 SYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFA 129
Query: 361 GAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNS------- 516
G +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T S
Sbjct: 130 GVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKSGSGTMNL 189
Query: 517 ------ETEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRS 666
+ EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K++V+ LRS
Sbjct: 190 GGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRS 245
>sp|P14315|CAPZB_CHICK F-actin capping protein beta subunit isoforms 1 and 2 (CapZ 36/32)
(CapZ B1 and B2) (Beta-actinin subunit II)
Length = 277
Score = 328 bits (842), Expect = 8e-90
Identities = 158/236 (66%), Positives = 190/236 (80%), Gaps = 14/236 (5%)
Frame = +1
Query: 1 LDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDYNRDGD 180
LDLMRRLPPQ+I+K+L DLI+LVP LCEDLLSSVDQPLKI++D GKDYLL DYNRDGD
Sbjct: 10 LDLMRRLPPQQIEKNLSDLIDLVPSLCEDLLSSVDQPLKIARDKVVGKDYLLCDYNRDGD 69
Query: 181 SYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSGFA 360
SYRSPWSN YDPPLEDG++PS R+R LE+EAN AF+ YR++Y++GGVSSVYLWDLD GFA
Sbjct: 70 SYRSPWSNKYDPPLEDGAMPSARLRKLEVEANNAFDQYRDLYFEGGVSSVYLWDLDHGFA 129
Query: 361 GAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNS------- 516
G +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T +
Sbjct: 130 GVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKTGSGTMNL 189
Query: 517 ------ETEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRS 666
+ EK+ +SD++ HI NIGRLVEDMEN IR LN++YFG +K++V+ LRS
Sbjct: 190 GGSLTRQMEKDETVSDSSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNGLRS 245
>sp|P34686|CAPZB_CAEEL F-actin capping protein beta subunit
Length = 270
Score = 301 bits (770), Expect = 2e-81
Identities = 148/261 (56%), Positives = 194/261 (74%), Gaps = 15/261 (5%)
Frame = +1
Query: 1 LDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDYNRDGD 180
LDLMRRLPPQ DK+L DLI+L P L +DLLS++DQPLKI+ D +TGK YLL DYNRDGD
Sbjct: 10 LDLMRRLPPQHCDKNLTDLIDLCPHLVDDLLSTIDQPLKIAADRETGKQYLLCDYNRDGD 69
Query: 181 SYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDS-GF 357
SYRSPWSN+YDPPLEDG LPS++ R +EIEAN AFE YR++Y++GGVSSVY WDLD+ GF
Sbjct: 70 SYRSPWSNTYDPPLEDGQLPSEKRRKMEIEANAAFESYRDLYFEGGVSSVYFWDLDNGGF 129
Query: 358 AGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSET---- 522
AG VLIKK GD K+ TGCWDSIHVIE+ E+ R A YKLTSTIMLWL+T S +
Sbjct: 130 AGIVLIKKEGDGAKNITGCWDSIHVIEITER--ARQAHYKLTSTIMLWLQTNKSSSGVMN 187
Query: 523 ---------EKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRSGLS 675
E + P++D N H+ N+GR++ED E+ +R +N++YFG +K ++ LRS
Sbjct: 188 LGGSLTRQHEMDAPINDQNTHLANMGRMIEDQESKMRLTINEIYFGKTKKVMSDLRSTEK 247
Query: 676 KSVEDQQRKLCQDVKIAIQNK 738
+S ++Q ++ +++ A+ N+
Sbjct: 248 QSELEKQDEIVRELNNAMANR 268
>sp|P13021|CAPZB_DICDI F-actin capping protein beta subunit (CAP32)
Length = 272
Score = 259 bits (663), Expect = 5e-69
Identities = 131/263 (49%), Positives = 176/263 (66%), Gaps = 17/263 (6%)
Frame = +1
Query: 1 LDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDYNRDGD 180
LDLMRRLPP +I+ +L L++LVPDL EDLLSS+DQPLK++ D + KDYLL DYNRD D
Sbjct: 10 LDLMRRLPPSQIEDNLAGLLDLVPDLTEDLLSSIDQPLKVAYDAVSKKDYLLCDYNRDAD 69
Query: 181 SYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSGFA 360
SYRSPWSN YDPPL PS ++R +E++AN+ FE+Y +Y++GGVSSVY WDLD FA
Sbjct: 70 SYRSPWSNKYDPPLSGACYPSSKLRDIEVQANEIFEIYLNLYFEGGVSSVYCWDLDDNFA 129
Query: 361 GAVLIKKAGDI----KSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSET-- 522
VL+KK D + G WDSIHV+EV + G A YKLTST+ML +ET N T
Sbjct: 130 AVVLMKKTQDQSKKGQPMRGTWDSIHVVEV-KLGKKDKAVYKLTSTVMLSIETDNDNTGK 188
Query: 523 -----------EKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRSG 669
EKE ++ + H VNIG++VEDME+ +R+ L +YFG +K +V++LR+
Sbjct: 189 VNLAGSLTRQDEKEYTFNEVDTHCVNIGKMVEDMESKLRQTLETIYFGKTKEVVNTLRNA 248
Query: 670 LSKSVEDQQRKLCQDVKIAIQNK 738
S ++++ L + AI N+
Sbjct: 249 TGNSELEKRKNLSNQIGSAIGNR 271
>sp|Q9HGP5|CAPZB_SCHPO Probable F-actin capping protein beta subunit
Length = 268
Score = 233 bits (593), Expect = 6e-61
Identities = 119/240 (49%), Positives = 159/240 (66%), Gaps = 18/240 (7%)
Frame = +1
Query: 1 LDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDYNRDGD 180
LDL+RRL P+ I K+L ++ + PDL + LLSSVDQPLK++ +++G YLL D+NRDGD
Sbjct: 8 LDLLRRLNPKDISKNLDTILSVAPDLADVLLSSVDQPLKVNTCSESGNQYLLCDFNRDGD 67
Query: 181 SYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDSGFA 360
SYRSPWSN YDPPLEDG + +DRVR LE+ N+A VY ++YY+GGVSSVYLWD D +A
Sbjct: 68 SYRSPWSNKYDPPLEDGLVSTDRVRKLEVSLNEAIRVYLDLYYEGGVSSVYLWDQDDSYA 127
Query: 361 GAVLIKKAGDIKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSE------- 519
GAVLIKKA S+ WDSIHV E Y+LTSTI+L+L + + E
Sbjct: 128 GAVLIKKASTSNSSG--WDSIHVFECLPTTETNVYDYRLTSTIILFLSSGSEEQSALPSK 185
Query: 520 -----------TEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLRS 666
T + +P +D + I N+G+LVE+ME +R L DVYFG +K++++ RS
Sbjct: 186 ALNLSGHLTRQTSQRLPAADDDTEIANVGKLVEEMETRMRNFLQDVYFGKTKDIINQTRS 245
>sp|Q9M9G7|CAPZB_ARATH Probable F-actin capping protein beta subunit (CapZ-beta)
Length = 256
Score = 208 bits (530), Expect = 1e-53
Identities = 107/240 (44%), Positives = 154/240 (64%), Gaps = 19/240 (7%)
Frame = +1
Query: 1 LDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTKTGKDYLLGDYNRDGD 180
L L+RR+PP++ + +L L+ L+P DLLS VD PL++ +D ++GKD++L +YNRD D
Sbjct: 5 LGLLRRMPPKQSETALSALLSLIPQHSSDLLSQVDLPLQVLRDIESGKDFILCEYNRDAD 64
Query: 181 SYRSPWSNSYDPPLEDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWDLDS-GF 357
SYRSPWSN Y PPLED PS +R LE+EAN F +YR+ YY+GG+SSVY+W+ D+ GF
Sbjct: 65 SYRSPWSNKYLPPLEDALYPSSELRKLEVEANDIFAIYRDQYYEGGISSVYMWEDDNEGF 124
Query: 358 AGAVLIKKAGDIKS-------ATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNS 516
LIKK G G WD+IHVI+V + A+Y LTSTIML L T +
Sbjct: 125 VACFLIKKDGSKSGHGRRGCLEEGAWDAIHVIQVGSE-EEEMAQYCLTSTIMLSLTTDDE 183
Query: 517 ETEK-----------EVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDSLR 663
+ K ++ L+ A+ H+ N+GR++E++E +R L+ VYFG ++ +V +LR
Sbjct: 184 SSGKFGLSGSIRRQMKMELAVADGHLCNMGRMIEELEGKLRNSLDQVYFGKTREMVCTLR 243
>sp|P13517|CAPZB_YEAST F-actin capping protein beta subunit
Length = 287
Score = 186 bits (471), Expect = 9e-47
Identities = 112/271 (41%), Positives = 162/271 (59%), Gaps = 34/271 (12%)
Frame = +1
Query: 1 LDLMRRLPPQKIDKSLQDLIELVPDLCEDLLSSVDQPLKISKDTK-TGKDYLLGDYNRDG 177
LDL+RRL P + ++L +LIEL P+L +DLLSSVD PL KD+ + ++YL DYNRD
Sbjct: 10 LDLLRRLNPTTLQENLNNLIELQPNLAQDLLSSVDVPLSTQKDSADSNREYLCCDYNRDI 69
Query: 178 DSYRSPWSNSYDPPL-----EDGSLPSDRVRSLEIEANKAFEVYREMYYDGGVSSVYLWD 342
DS+RSPWSN+Y P L +D PS +R LEI AN +F+VYR++YY+GG+SSVYLWD
Sbjct: 70 DSFRSPWSNTYYPELSPKDLQDSPFPSAPLRKLEILANDSFDVYRDLYYEGGISSVYLWD 129
Query: 343 LDS------GFAGAVLIKKAGDIKSATGCWDSIHVIEVEEKGSGRNA-RYKLTSTIMLWL 501
L+ FAG VL KK +S WDSIHV EV S ++ Y++T+TI+L L
Sbjct: 130 LNEEDFNGHDFAGVVLFKKN---QSDHSNWDSIHVFEVTTSPSSPDSFNYRVTTTIILHL 186
Query: 502 E----TQNS----------ETEKEVPLSDA-------NNHIVNIGRLVEDMENSIRKQLN 618
+ QNS +TEK++ + + +H+ N+G L+ED+E+ +R L
Sbjct: 187 DKTKTDQNSHMMLSGNLTRQTEKDIAIDMSRPLDVIFTSHVANLGSLIEDIESQMRNLLE 246
Query: 619 DVYFGTSKNLVDSLRSGLSKSVEDQQRKLCQ 711
VYF ++++ ++ S ++ K Q
Sbjct: 247 TVYFEKTRDIFHQTKNAAIASSAEEANKDAQ 277
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,932,060
Number of Sequences: 369166
Number of extensions: 1963448
Number of successful extensions: 5257
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5217
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)