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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01395
         (689 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O44252|ROST_DROME  Rolling stone protein                        40   0.004

>sp|O44252|ROST_DROME Rolling stone protein
          Length = 275

 Score = 40.4 bits (93), Expect = 0.004
 Identities = 23/87 (26%), Positives = 39/87 (44%)
 Frame = +1

Query: 247 VKHTIPSIIVLIDLLTNRIILELAHXXXXXXXXXXXXXFSVTYYHLGGTRYDKKPYVYES 426
           + H + S+++LID L     L + H             F++ Y+  GGT      YVY  
Sbjct: 163 ITHGMNSVMMLIDFLVIAFPLRILHMVYGMSLAIFFFLFTLIYHLCGGTDEFGNHYVYPI 222

Query: 427 IDWRNNESATTACFIVLIFTIIIHGIL 507
           +DW NN +     F+ +   I+ + +L
Sbjct: 223 LDW-NNPNRCMVTFVGIFLLIMCYWVL 248

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,328,484
Number of Sequences: 369166
Number of extensions: 1070749
Number of successful extensions: 2679
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2676
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5927776870
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)