Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01378
(419 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q81VX3|HSLO_BACAN 33 kDa chaperonin (Heat shock protein ... 31 1.2
sp|Q81J80|HSLO_BACCR 33 kDa chaperonin (Heat shock protein ... 31 1.2
sp|Q9REQ9|MRAW_ZYMMO S-adenosyl-methyltransferase mraW 30 2.0
sp|P21675|TAF1_HUMAN Transcription initiation factor TFIID ... 28 7.7
sp|P43687|HMX2_MOUSE Homeobox protein HMX2 (Homeobox protei... 28 7.7
>sp|Q81VX3|HSLO_BACAN 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33)
Length = 291
Score = 30.8 bits (68), Expect = 1.2
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = -2
Query: 418 KDGLNMVRKYEEELEINDFASNVRYRLTSKETMTNLSE 305
K L VR+ EEE E++ N RY+ SKE +TNL E
Sbjct: 253 KTELEQVREEEEETEVHCHFCNERYKF-SKEDITNLIE 289
>sp|Q81J80|HSLO_BACCR 33 kDa chaperonin (Heat shock protein 33 homolog) (HSP33)
Length = 291
Score = 30.8 bits (68), Expect = 1.2
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = -2
Query: 418 KDGLNMVRKYEEELEINDFASNVRYRLTSKETMTNLSE 305
K L VR+ EEE E++ N RY+ SKE +TNL E
Sbjct: 253 KTELEQVREEEEETEVHCHFCNERYKF-SKEDITNLIE 289
>sp|Q9REQ9|MRAW_ZYMMO S-adenosyl-methyltransferase mraW
Length = 332
Score = 30.0 bits (66), Expect = 2.0
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 418 KDGLNMVRKYEEELE-INDFASNVRYRLTSKETMTNLSEYYDVGVS 284
++G ++V KY+ L +ND SN+ + L + + T +D+GVS
Sbjct: 63 REGASLVEKYKGRLRLVNDCFSNIGHHLDALDIKTVDGMVFDIGVS 108
>sp|P21675|TAF1_HUMAN Transcription initiation factor TFIID subunit 1 (Transcription
initiation factor TFIID 250 kDa subunit) (TAF(II)250)
(TAFII-250) (TAFII250) (TBP-associated factor 250 kDa)
(p250) (Cell cycle gene 1 protein)
Length = 1872
Score = 28.1 bits (61), Expect = 7.7
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 147 LMIRIISFLAACILISDTDSNER*SGRSPF 236
L++R + + A ++SDTDS+E +G PF
Sbjct: 7 LLLRTAATITAAAIMSDTDSDEDSAGGGPF 36
>sp|P43687|HMX2_MOUSE Homeobox protein HMX2 (Homeobox protein Nkx-5.2)
Length = 273
Score = 28.1 bits (61), Expect = 7.7
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Frame = -3
Query: 411 VSTWFGNTKKNWKSMISPAMSDID*LAKKQ*QTSVNITM*GFQCAVCICPL-----ISAK 247
V TWF N + WK +S + + +A QT V + + ++ P+ A
Sbjct: 193 VKTWFQNRRNKWKRQLSAELEAAN-MAHASAQTLVGMPLVFRDSSLLRVPVPRSLAFPAP 251
Query: 246 KWSRTANAHSISHWNLYQKSKY 181
+ ++N ++ +NLY K Y
Sbjct: 252 LYYPSSNLSALPLYNLYNKLDY 273
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,605,215
Number of Sequences: 369166
Number of extensions: 795442
Number of successful extensions: 2341
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2341
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2002648600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)