Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01370
(793 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B (Ub... 37 0.080
sp|P46590|ALS1_CANAL Agglutinin-like protein 1 precursor 35 0.18
sp|Q9R0M4|PODXL_MOUSE Podocalyxin-like protein 1 precursor 35 0.31
sp|Q24523|BUN2_DROME Bunched protein, class 2 isoform (Shor... 34 0.40
sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest... 32 2.0
sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest... 32 2.0
sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II largest... 32 2.0
sp|Q09624|YS89_CAEEL Hypothetical protein ZK945.9 in chromo... 32 2.0
sp|Q8NU97|PKN2_CORGL Serine/threonine protein kinases pknA 32 2.0
sp|Q5QGU6|RTP3_MOUSE Receptor-transporting protein 3 (Trans... 32 2.6
>sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B (Ubiquitin-fusion degradation
protein 2) (Homozygously deleted in neuroblastoma-1)
Length = 1302
Score = 36.6 bits (83), Expect = 0.080
Identities = 19/62 (30%), Positives = 36/62 (58%)
Frame = +2
Query: 209 SVISGSSSYTEPTSTRLRPKSYYNPGSTNSVSTTYSRPSSMILKNNSPSKPASTPNNQEN 388
S SG+++ ++P+S R RP + +P +++ VS S PS L ++ + PAS+ + +
Sbjct: 314 SAASGTAAGSQPSSPRYRPYTVTHPWASSGVSILSSSPSPPALASSPQAVPASSSRQRPS 373
Query: 389 IT 394
T
Sbjct: 374 ST 375
>sp|P46590|ALS1_CANAL Agglutinin-like protein 1 precursor
Length = 1260
Score = 35.4 bits (80), Expect = 0.18
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Frame = +2
Query: 206 PSVISGSSSYTEPTSTRLRPKSYYNPGSTN--SVSTTYS-------RPSSMILKNNSPSK 358
P+V SG+ TEPT TR +P + TN SV+TT + PS+ + + +
Sbjct: 1109 PAVSSGTDVTTEPTDTREQPTTLSTTSKTNSESVATTQATNENGGKSPSTDLTSSLTTGT 1168
Query: 359 PASTPNNQENIT 394
AST N E +T
Sbjct: 1169 SASTSANSELVT 1180
Score = 32.7 bits (73), Expect = 1.2
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 188 NSDKYIPSVISGSSSYT-EPTSTRLRPKSYYNPGSTNSVSTTYSRPSSMILKNNSPSKPA 364
+S K +P V+S ++ T EPT+TR +P + ++ + T S+P+ N S + P
Sbjct: 993 SSTKVLPPVVSSNTDLTSEPTNTREQPTTLSTTSNSITEDITTSQPTGDNGDNTSSTNPV 1052
Query: 365 ST 370
T
Sbjct: 1053 PT 1054
>sp|Q9R0M4|PODXL_MOUSE Podocalyxin-like protein 1 precursor
Length = 503
Score = 34.7 bits (78), Expect = 0.31
Identities = 20/73 (27%), Positives = 31/73 (42%)
Frame = +2
Query: 170 PRRRHENSDKYIPSVISGSSSYTEPTSTRLRPKSYYNPGSTNSVSTTYSRPSSMILKNNS 349
P N ++ S I S+ + ++T + +P ++ ST S P+ S
Sbjct: 17 PASHSHNGNETSTSAIKSSTVQSHQSATTSTEVTTGHPVASTLASTQPSNPTPFTTSTQS 76
Query: 350 PSKPASTPNNQEN 388
PS P STPN N
Sbjct: 77 PSMPTSTPNPTSN 89
>sp|Q24523|BUN2_DROME Bunched protein, class 2 isoform (Shortsighted protein)
Length = 1206
Score = 34.3 bits (77), Expect = 0.40
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Frame = +2
Query: 218 SGSSSYTEPTSTRLRPKSYYNPGSTNSVSTTYSRPSSMILKNNSPSK------PASTPNN 379
S +SS TST L PKS + G +N ST + ++ NNS S AS+PNN
Sbjct: 220 SSNSSLATSTSTSLAPKSSSSSGGSN--STPQQQQQQLVSSNNSSSSSNNSFTKASSPNN 277
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II largest subunit (RPB1)
Length = 1970
Score = 32.0 bits (71), Expect = 2.0
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = +2
Query: 191 SDKYIPSVISGSSSYTEPTSTRLRPKSYYNPGSTNSVSTTYSRPSSMILKNNSPSKPAST 370
S YIPS S PTS P+S PG S +YS P+S SPS ++
Sbjct: 1578 SSPYIPSPGGAMSPSYSPTSPAYEPRS---PGGYTPQSPSYS-PTSPSYSPTSPSYSPTS 1633
Query: 371 PN 376
PN
Sbjct: 1634 PN 1635
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II largest subunit (RPB1)
Length = 1970
Score = 32.0 bits (71), Expect = 2.0
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = +2
Query: 191 SDKYIPSVISGSSSYTEPTSTRLRPKSYYNPGSTNSVSTTYSRPSSMILKNNSPSKPAST 370
S YIPS S PTS P+S PG S +YS P+S SPS ++
Sbjct: 1578 SSPYIPSPGGAMSPSYSPTSPAYEPRS---PGGYTPQSPSYS-PTSPSYSPTSPSYSPTS 1633
Query: 371 PN 376
PN
Sbjct: 1634 PN 1635
>sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II largest subunit (RPB1)
Length = 467
Score = 32.0 bits (71), Expect = 2.0
Identities = 23/62 (37%), Positives = 28/62 (45%)
Frame = +2
Query: 191 SDKYIPSVISGSSSYTEPTSTRLRPKSYYNPGSTNSVSTTYSRPSSMILKNNSPSKPAST 370
S YIPS S PTS P+S PG S +YS P+S SPS ++
Sbjct: 75 SSPYIPSPGGAMSPSYSPTSPAYEPRS---PGGYTPQSPSYS-PTSPSYSPTSPSYSPTS 130
Query: 371 PN 376
PN
Sbjct: 131 PN 132
>sp|Q09624|YS89_CAEEL Hypothetical protein ZK945.9 in chromosome II
Length = 3178
Score = 32.0 bits (71), Expect = 2.0
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +2
Query: 206 PSVISGSSSYTEPTSTRLRPKSYYNPGSTNSV--STTYSRPSSMILKNNSPSKPASTPNN 379
PS +S+ TEP+STR + + GST ++ STT S S+ + S ++T ++
Sbjct: 680 PSSTLSTSTVTEPSSTRSSDSTTTSAGSTTTLQESTTTSEESTTDSSTTTISDTSTTSSS 739
Query: 380 QENITLD 400
+ T D
Sbjct: 740 PSSTTAD 746
>sp|Q8NU97|PKN2_CORGL Serine/threonine protein kinases pknA
Length = 469
Score = 32.0 bits (71), Expect = 2.0
Identities = 20/72 (27%), Positives = 36/72 (50%)
Frame = +2
Query: 185 ENSDKYIPSVISGSSSYTEPTSTRLRPKSYYNPGSTNSVSTTYSRPSSMILKNNSPSKPA 364
E + +++P S++TEP +T RP + + ST+ TT + SS + P P
Sbjct: 382 ETTSQWVPPTPPTRSTFTEPETTSHRPTT--SEESTSEEPTTEAPTSSRTV----PQIPT 435
Query: 365 STPNNQENITLD 400
STP ++ ++
Sbjct: 436 STPRTSASVPVE 447
>sp|Q5QGU6|RTP3_MOUSE Receptor-transporting protein 3 (Transmembrane protein 7)
Length = 474
Score = 31.6 bits (70), Expect = 2.6
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Frame = +2
Query: 188 NSDKYIP---SVISGSSSYTEPTSTRLRPKSYYNPGSTNSV----STTYSRPSSMI--LK 340
+S Y+P S + +SSY PTS+ + P S Y P +++SV S+++ P + I ++
Sbjct: 357 SSPLYVPPTSSYVPPTSSYVPPTSSYVPPTSSYVPPTSSSVIVPISSSWRLPENTICQVE 416
Query: 341 NNSPSKPAS 367
NS P S
Sbjct: 417 RNSHIHPQS 425
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,633,404
Number of Sequences: 369166
Number of extensions: 1337847
Number of successful extensions: 3782
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3770
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)