Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01345
(405 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14210|LY6D_HUMAN Lymphocyte antigen Ly-6D precursor (E4... 39 0.003
sp|O77541|CD59_RABIT CD59 glycoprotein precursor (Membrane ... 39 0.004
sp|P35459|LY6D_MOUSE Lymphocyte antigen Ly-6D precursor (Th... 38 0.007
sp|P61050|LYNX1_MACMU Ly-6/neurotoxin-like protein 1 precursor 35 0.057
sp|P09568|LY6C_MOUSE Lymphocyte antigen Ly-6C precursor 35 0.074
sp|P28697|HTGA_ECOLI Very hypothetical heat shock protein h... 34 0.13
sp|P57096|PSCA_MOUSE Prostate stem cell antigen precursor 33 0.22
sp|P01382|NXL1_NAJOX Long neurotoxin 1 (Neurotoxin I) 33 0.28
sp|P35461|LY6G_MOUSE Lymphocyte antigen Ly-6G.1 precursor 32 0.37
sp|P55000|SLUR1_HUMAN Secreted Ly-6/uPAR related protein 1 ... 32 0.37
>sp|Q14210|LY6D_HUMAN Lymphocyte antigen Ly-6D precursor (E48 antigen)
Length = 128
Score = 39.3 bits (90), Expect = 0.003
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Frame = +2
Query: 26 SVNCYVCVGCPVPFSASAALISPGCSS-CATFTV-----GSVISKTCTSSCTAAFV---- 175
++ C+VC + +++ P S C T G+++ K C SCT ++
Sbjct: 20 TLRCHVCTSSS---NCKHSVVCPASSRFCKTTNTVEPLRGNLVKKDCAESCTPSYTLQGQ 76
Query: 176 --SSTSKTECCSTNLCN 220
S TS T+CC +LCN
Sbjct: 77 VSSGTSSTQCCQEDLCN 93
>sp|O77541|CD59_RABIT CD59 glycoprotein precursor (Membrane attack complex inhibition
factor) (MACIF) (MAC-inhibitory protein) (MAC-IP)
(Protectin)
Length = 124
Score = 38.9 bits (89), Expect = 0.004
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
Frame = +2
Query: 11 YSSSQSVNCYVCVGCPVPFSASAALISPGCSSCATFTVGSVISKTC--TSSCTAAFVS-- 178
YSS S+ CY C+ P P ++ +P +C T G + + C C F+S
Sbjct: 20 YSSDSSLMCYHCL-LPSPNCSTVTNCTPNHDACLTAVSGPRVYRQCWRYEDCNFEFISNR 78
Query: 179 ---STSKTECCSTNLCN 220
++ K CC +LCN
Sbjct: 79 LEENSLKYNCCRKDLCN 95
>sp|P35459|LY6D_MOUSE Lymphocyte antigen Ly-6D precursor (Thymocyte B cell antigen) (ThB)
Length = 127
Score = 38.1 bits (87), Expect = 0.007
Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 21/107 (19%)
Frame = +2
Query: 14 SSSQSVNCYVCVGCPVPFSASAALISPG-CSS----CATFTV-----GSVISKTCTSSCT 163
S + ++ C+VC SA +P C S C T T G+++ K C +SCT
Sbjct: 16 SPAWALRCHVCTN-------SANCKNPQVCPSNFYFCKTVTSVEPLNGNLVRKECANSCT 68
Query: 164 AAF-----VSSTSK-TECCSTNLCN-----SGSRFQILMGTILGLST 271
+ + VSS S+ T+CC T+LCN + +L LGL+T
Sbjct: 69 SDYSQQGHVSSGSEVTQCCQTDLCNERLVSAAPGHALLSSVTLGLAT 115
>sp|P61050|LYNX1_MACMU Ly-6/neurotoxin-like protein 1 precursor
Length = 118
Score = 35.0 bits (79), Expect = 0.057
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 10/79 (12%)
Frame = +2
Query: 23 QSVNCYVCV----GCPVPFSASAALISPGCSSCATFTVGS--VISKTCTSSCTAAFVSST 184
Q+++C+VC C P A + C + T+ + +SK+C SC
Sbjct: 21 QALDCHVCAYNGDNCFNPMRCPAMVAY--CMTTRTYYTPTRMKVSKSCVPSCFETVYDGY 78
Query: 185 SK----TECCSTNLCNSGS 229
SK T CC +LCNS S
Sbjct: 79 SKHASTTSCCQYDLCNSAS 97
>sp|P09568|LY6C_MOUSE Lymphocyte antigen Ly-6C precursor
Length = 131
Score = 34.7 bits (78), Expect = 0.074
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 12/99 (12%)
Frame = +2
Query: 20 SQSVNCYVCVGCPVPFSASAALISPGCSSCATFTVGSVI--------SKTCTSSCTAAFV 175
+Q + CY C G P+ S A C + + ++ C S C A
Sbjct: 24 AQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVP 83
Query: 176 ----SSTSKTECCSTNLCNSGSRFQILMGTILGLSTFAV 280
+ +T CCS +LCN+ T+ G+ F++
Sbjct: 84 IKDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSL 122
>sp|P28697|HTGA_ECOLI Very hypothetical heat shock protein htgA (Heat shock protein htpY)
Length = 196
Score = 33.9 bits (76), Expect = 0.13
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 53 CPVPFSASAALISPGCSSCATFTVGSVISKT---CTSSCTAAFVSSTSKTECCS 205
C PF+ + + IS G SS ++FT+ S + C+SS + + CCS
Sbjct: 45 CDTPFANNLSFISSGSSSSSSFTLASTACRNSCLCSSSIFFQVLRRNCSSNCCS 98
>sp|P57096|PSCA_MOUSE Prostate stem cell antigen precursor
Length = 123
Score = 33.1 bits (74), Expect = 0.22
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Frame = +2
Query: 44 CVGCPVPFSASAALISPGCS----SCATFTVGS-----VISKTCTSSC---TAAFVSSTS 187
C C + L CS SC T + + VISK C+S C + +
Sbjct: 23 CYSCTAQMNNRDCLNVQNCSLDQHSCFTSRIRAIGLVTVISKGCSSQCEDDSENYYLGKK 82
Query: 188 KTECCSTNLCNSGSRFQILMGTILGLST 271
CC ++LCN + T LGL T
Sbjct: 83 NITCCYSDLCNVNGAHTLKPPTTLGLLT 110
>sp|P01382|NXL1_NAJOX Long neurotoxin 1 (Neurotoxin I)
Length = 73
Score = 32.7 bits (73), Expect = 0.28
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Frame = +2
Query: 44 CVGCPVPFSASAALISPGCSSCATFTV--------GSVISKTCTSSCTAAFVSSTSKTEC 199
C P+P ++ +PG + C T T G VI C ++C V S +C
Sbjct: 3 CYKTPIPITSETC--APGQNLCYTKTWCDAWCGSRGKVIELGCAATCPT--VESYQDIKC 58
Query: 200 CSTNLCN 220
CST+ CN
Sbjct: 59 CSTDDCN 65
>sp|P35461|LY6G_MOUSE Lymphocyte antigen Ly-6G.1 precursor
Length = 111
Score = 32.3 bits (72), Expect = 0.37
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 15/104 (14%)
Frame = +2
Query: 20 SQSVNCYVCVGCPVPFSASAALISPGCSSCATFTVGSVI--------SKTCTSSCTAAFV 175
+Q + CY C+G P S + C + ++ S C C
Sbjct: 1 AQGLECYNCIGVPPETSCNTTTCPFSDGFCVALEIEVIVDSHRSKVKSNLCLPICPTTLD 60
Query: 176 SS-------TSKTECCSTNLCNSGSRFQILMGTILGLSTFAVVN 286
++ KT CC +LCN+ T+ G+ F++V+
Sbjct: 61 NTEITGNAVNVKTYCCKEDLCNAAVPTGGSSWTMAGVLLFSLVS 104
>sp|P55000|SLUR1_HUMAN Secreted Ly-6/uPAR related protein 1 precursor (SLURP-1) (ARS
component B) (ARS(Component B)-81/S) (Anti-neoplastic
urinary protein) (ANUP)
Length = 103
Score = 32.3 bits (72), Expect = 0.37
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Frame = +2
Query: 23 QSVNCYVCVGCPVPFSASAALIS---PGCSSCAT----------FTVGSVISKTCTSSCT 163
+++ CY C P+ SAS I+ P ++C T F V++++C+SSC
Sbjct: 21 EALKCYTCKE-PMT-SASCRTITRCKPEDTACMTTLVTVEAEYPFNQSPVVTRSCSSSCV 78
Query: 164 AAFVSSTSKTE---CCSTNLCNS 223
A S CC +LCNS
Sbjct: 79 ATDPDSIGAAHLIFCCFRDLCNS 101
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,628,556
Number of Sequences: 369166
Number of extensions: 632194
Number of successful extensions: 2521
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2498
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)