Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01339
(839 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K400|STXB5_MOUSE Syntaxin-binding protein 5 (Tomosyn-1) 119 1e-26
sp|Q5T5C0|STXB5_HUMAN Syntaxin-binding protein 5 (Tomosyn-1) 117 4e-26
sp|Q9Y2K9|STB5L_HUMAN Syntaxin binding protein 5-like (Tomo... 115 2e-25
sp|Q5DQR4|STB5L_MOUSE Syntaxin binding protein 5-like (Tomo... 111 2e-24
sp|Q5SQE2|STB5L_BRARE Syntaxin binding protein 5-like 99 1e-20
sp|Q8NGI6|OR4DA_HUMAN Olfactory receptor 4D10 (Olfactory re... 35 0.20
sp|P08111|L2GL_DROME Lethal(2) giant larvae protein 33 0.98
sp|Q57571|Y107_METJA Hypothetical protein MJ0107 33 0.98
sp|Q08470|L2GL_DROPS Lethal(2) giant larvae protein (P127) 33 1.3
sp|Q8NGI4|OR4DB_HUMAN Olfactory receptor 4D11 31 3.7
>sp|Q8K400|STXB5_MOUSE Syntaxin-binding protein 5 (Tomosyn-1)
Length = 1152
Score = 119 bits (298), Expect = 1e-26
Identities = 60/141 (42%), Positives = 92/141 (65%), Gaps = 1/141 (0%)
Frame = +2
Query: 419 INDCQFAVLCSEKNAEVIALPSQSQLYKIKITETSVVLKANVINVKSSPCLVTFLANSHL 598
I++ Q+AV+CSEK A+V++LP+QS YK ITETS VL+ +++ + +S CL F AN H+
Sbjct: 910 ISENQYAVICSEKQAKVMSLPTQSCAYKQNITETSFVLRGDIVALSNSVCLACFCANGHI 969
Query: 599 MAFSLPSLRLLMDLDSV-LSENWDENALCFANHGLLAYMSSLSEMDKASFSAEITNNIKN 775
M FSLPSLR L+D+ + L+ CFAN+G Y+ S +E+ + ++S E N++
Sbjct: 970 MTFSLPSLRPLLDVYYLPLTNMRIARTFCFANNGQALYLVSPTEIQRLTYSQETCENLQE 1029
Query: 776 AQGDLYNQREMPSPPKKGFFE 838
G+L+ E P P +GFF+
Sbjct: 1030 MLGELFTPVETPEAPNRGFFK 1050
Score = 71.2 bits (173), Expect = 3e-12
Identities = 32/59 (54%), Positives = 46/59 (77%), Gaps = 3/59 (5%)
Frame = +2
Query: 2 PCLWIGTSLGSIIVVNLNIP---DLRTTQPVIVSPSGTVYRLRGSILSISFLDSNGDLL 169
PCLW+GT++G+ V+ LN+P + R QPVIVSPSGT+ RL+G+IL ++FLD+ G L+
Sbjct: 814 PCLWVGTTVGTAFVITLNLPPGPEQRLLQPVIVSPSGTILRLKGAILRMAFLDATGCLM 872
>sp|Q5T5C0|STXB5_HUMAN Syntaxin-binding protein 5 (Tomosyn-1)
Length = 1151
Score = 117 bits (293), Expect = 4e-26
Identities = 59/141 (41%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
Frame = +2
Query: 419 INDCQFAVLCSEKNAEVIALPSQSQLYKIKITETSVVLKANVINVKSSPCLVTFLANSHL 598
I++ Q+AV+CSEK A+VI+LP+Q+ YK ITETS VL+ +++ + +S CL F AN H+
Sbjct: 909 ISENQYAVICSEKQAKVISLPTQNCAYKQNITETSFVLRGDIVALSNSICLACFCANGHI 968
Query: 599 MAFSLPSLRLLMDLDSV-LSENWDENALCFANHGLLAYMSSLSEMDKASFSAEITNNIKN 775
M FSLPSLR L+D+ + L+ CF N+G Y+ S +E+ + ++S E N++
Sbjct: 969 MTFSLPSLRPLLDVYYLPLTNMRIARTFCFTNNGQALYLVSPTEIQRLTYSQETCENLQE 1028
Query: 776 AQGDLYNQREMPSPPKKGFFE 838
G+L+ E P P +GFF+
Sbjct: 1029 MLGELFTPVETPEAPNRGFFK 1049
Score = 73.9 bits (180), Expect = 5e-13
Identities = 33/59 (55%), Positives = 48/59 (81%), Gaps = 3/59 (5%)
Frame = +2
Query: 2 PCLWIGTSLGSIIVVNLNIP---DLRTTQPVIVSPSGTVYRLRGSILSISFLDSNGDLL 169
PCLW+GT+LG+++V+ LN+P + R QPVIVSPSGT+ RL+G+IL ++FLD+ G L+
Sbjct: 813 PCLWVGTTLGTVLVIALNLPPGGEQRLLQPVIVSPSGTILRLKGAILRMAFLDTTGCLI 871
>sp|Q9Y2K9|STB5L_HUMAN Syntaxin binding protein 5-like (Tomosyn-2) (LLGL4 homolog)
Length = 1186
Score = 115 bits (287), Expect = 2e-25
Identities = 58/141 (41%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
Frame = +2
Query: 419 INDCQFAVLCSEKNAEVIALPSQSQLYKIKITETSVVLKANVINVKSSPCLVTFLANSHL 598
I D Q+ ++CSEK A+V +LPSQ+ LY ITETS +L+ANV+ + SS CL F AN H+
Sbjct: 944 IGDHQYTIICSEKQAKVFSLPSQTCLYVHNITETSFILQANVVVMCSSACLACFCANGHI 1003
Query: 599 MAFSLPSLRLLMDLDSV-LSENWDENALCFANHGLLAYMSSLSEMDKASFSAEITNNIKN 775
M SLPSLR ++D++ + L++ CF N G Y+ S +E+ + ++S E+ +N+++
Sbjct: 1004 MIMSLPSLRPMLDVNYLPLTDMRIARTFCFTNEGQALYLVSPTEIQRLTYSQEMCDNLQD 1063
Query: 776 AQGDLYNQREMPSPPKKGFFE 838
GDL+ E P +GF +
Sbjct: 1064 MLGDLFTPIETPEAQNRGFLK 1084
Score = 61.2 bits (147), Expect = 3e-09
Identities = 27/59 (45%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
Frame = +2
Query: 2 PCLWIGTSLGSIIVVNLNIP---DLRTTQPVIVSPSGTVYRLRGSILSISFLDSNGDLL 169
PCL++GTSLG +++++LN+P + R T+PV+V PSGT L+G++L+ S +D G L+
Sbjct: 851 PCLFVGTSLGMVLIISLNLPLADEQRFTEPVMVLPSGTFLSLKGAVLTFSCMDRMGGLM 909
>sp|Q5DQR4|STB5L_MOUSE Syntaxin binding protein 5-like (Tomosyn-2)
Length = 1185
Score = 111 bits (278), Expect = 2e-24
Identities = 56/141 (39%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
Frame = +2
Query: 419 INDCQFAVLCSEKNAEVIALPSQSQLYKIKITETSVVLKANVINVKSSPCLVTFLANSHL 598
+ D Q+ ++CSEK A+V +LPSQ+ LY ITETS +L+A+V+ + +S CL F AN H+
Sbjct: 943 MGDHQYTIICSEKQAKVFSLPSQTCLYVHNITETSFILQADVVVMCNSACLACFCANGHI 1002
Query: 599 MAFSLPSLRLLMDLDSV-LSENWDENALCFANHGLLAYMSSLSEMDKASFSAEITNNIKN 775
M SLPSLR ++D++ + L++ CF N G Y+ S +E+ + ++S E+ +NI++
Sbjct: 1003 MIMSLPSLRPMLDVNYLPLTDMRIARTFCFTNEGQALYLVSPTEIQRLTYSQEMCDNIQD 1062
Query: 776 AQGDLYNQREMPSPPKKGFFE 838
GDL+ E P +GF +
Sbjct: 1063 MLGDLFTPIETPEAQNRGFLK 1083
Score = 62.8 bits (151), Expect = 1e-09
Identities = 27/59 (45%), Positives = 44/59 (74%), Gaps = 3/59 (5%)
Frame = +2
Query: 2 PCLWIGTSLGSIIVVNLNIP---DLRTTQPVIVSPSGTVYRLRGSILSISFLDSNGDLL 169
PCL++GTSLG +++++LN+P + R T+PV+V PSGT L+G++L+ S +D G L+
Sbjct: 850 PCLFVGTSLGMVVLISLNLPSSDEQRFTEPVVVLPSGTFLSLKGAVLTFSCMDRTGSLM 908
>sp|Q5SQE2|STB5L_BRARE Syntaxin binding protein 5-like
Length = 1159
Score = 99.4 bits (246), Expect = 1e-20
Identities = 54/143 (37%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Frame = +2
Query: 413 DTINDCQFAVLCSEKNAEVIALPSQSQLYKIKITETSVVLKANVINVKSSPCLVTFLANS 592
+ D AV+CSE+ A+V +PSQ+ LY ITE+S VL+A+V++V +S CL F AN
Sbjct: 919 EACGDGHLAVVCSERQAKVFYMPSQACLYVHNITESSFVLRADVVSVSNSVCLACFCANG 978
Query: 593 HLMAFSLPSLRLLMDLDSV-LSENWDENALCFANHGLLAYMSSLSEMDKASFSAEITNNI 769
H+M SLPSLR L+D+ + L++ CF N G Y+ S +E+ + ++S E+ +
Sbjct: 979 HIMILSLPSLRPLLDVSYLPLTDMRIARTFCFTNGGQALYLCSPTEIQRITYSQEMCETL 1038
Query: 770 KNAQGDLYNQREMPSPPKKGFFE 838
G+L+ E P +GF +
Sbjct: 1039 ----GELFTPIETPEAQNRGFLK 1057
Score = 62.0 bits (149), Expect = 2e-09
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Frame = +2
Query: 2 PCLWIGTSLGSIIVVNLNIP---DLRTTQPVIVSPSGTVYRLRGSILSISFLDSNGDLL 169
PCLW+GTSLG ++++ ++IP R PV V+P+GTV L+GS+L FLD G L+
Sbjct: 827 PCLWVGTSLGLVLIIPMSIPTDEQERQEDPVTVAPTGTVLMLKGSVLRFGFLDCGGALI 885
>sp|Q8NGI6|OR4DA_HUMAN Olfactory receptor 4D10 (Olfactory receptor OR11-251)
Length = 311
Score = 35.4 bits (80), Expect = 0.20
Identities = 29/90 (32%), Positives = 39/90 (43%)
Frame = -3
Query: 555 FTFITLAFNTTLVSVILILYNCDCEGRAITSAFFSEHNTAN*QSFMVSVITSFCKLVPLL 376
F F+ L + TTL+ +LI+ CE R T +F HN + S IT LV LL
Sbjct: 28 FLFLLLVYVTTLLGNLLIMVTVTCESRLHTPMYFLLHNLSI-ADICFSSITVPKVLVDLL 86
Query: 375 DTRTNPKLLLLLDTVDCFET*FIFFEVIGV 286
R + CF F+F + GV
Sbjct: 87 SERKT------ISFNHCFTQMFLFHLIGGV 110
>sp|P08111|L2GL_DROME Lethal(2) giant larvae protein
Length = 1161
Score = 33.1 bits (74), Expect = 0.98
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +2
Query: 509 ITETSVVLKANVINVKSSPCLVTFLANSHLMAFSLPSLRLLMDLDSVLSENWDE-NALCF 685
I+ + V + +V N + CL +M S+P L+ ++ +V E+ + ++LCF
Sbjct: 886 ISGSLAVSRGDVYNETALICLTNM---GDIMVLSVPELKRQLNAAAVRREDINGVSSLCF 942
Query: 686 ANHGLLAYMSSLSEMDKASFS 748
N G YM S SE+ + + +
Sbjct: 943 TNSGEALYMMSSSELQRIALA 963
>sp|Q57571|Y107_METJA Hypothetical protein MJ0107
Length = 525
Score = 33.1 bits (74), Expect = 0.98
Identities = 34/125 (27%), Positives = 58/125 (46%)
Frame = -3
Query: 375 DTRTNPKLLLLLDTVDCFET*FIFFEVIGVGLAVSFXXXXXLIDELDPYDVLDGNLVSGV 196
D NP + +DT++ E E I +G + +DEL PY + D + V
Sbjct: 215 DLTDNP---ISVDTLNTKE----LIEAINLGADMILSVDAGNLDELIPY-LKDSE--TAV 264
Query: 195 VVLPTDFATSKSPFESKNEIESIDPRSR*TVPLGDTITG*VVLRSGIFKLTTIIDPRLVP 16
VVLPT++ T+ P + +I+S++ + ++ +GI K+ + DP L P
Sbjct: 265 VVLPTNYKTNYVPETIEGKIKSLEENIK------------KLIDAGIEKI--VADPILEP 310
Query: 15 IHKQG 1
I+ G
Sbjct: 311 INNAG 315
>sp|Q08470|L2GL_DROPS Lethal(2) giant larvae protein (P127)
Length = 1166
Score = 32.7 bits (73), Expect = 1.3
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +2
Query: 509 ITETSVVLKANVINVKSSPCLVTFLANSHLMAFSLPSLRLLMDLDSVLSENWDE-NALCF 685
++ TS + ++ + + CL +M S+P L+ ++ +V E+ + ++LCF
Sbjct: 888 VSATSAAGRGDLYHEMALICLTNM---GDIMVLSVPELKRQLNAAAVRREDINGISSLCF 944
Query: 686 ANHGLLAYMSSLSEMDKASFS 748
N G YM S SE+ + + S
Sbjct: 945 TNDGEALYMMSSSELQRIALS 965
>sp|Q8NGI4|OR4DB_HUMAN Olfactory receptor 4D11
Length = 311
Score = 31.2 bits (69), Expect = 3.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -3
Query: 555 FTFITLAFNTTLVSVILILYNCDCEGRAITSAFFSEHNTA 436
F F+ L + TTL+ +LI+ CE R T +F N A
Sbjct: 28 FLFLCLVYMTTLLGNLLIMVTVTCESRLHTPMYFLLRNLA 67
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,609,292
Number of Sequences: 369166
Number of extensions: 1897712
Number of successful extensions: 4466
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4456
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)