Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01319
(457 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q35826|COX3_SPOFR Cytochrome c oxidase subunit 3 (Cytoch... 100 3e-21
sp|P14574|COX3_LOCMI Cytochrome c oxidase subunit 3 (Cytoch... 99 3e-21
sp|P26858|COX3_MARPO Cytochrome c oxidase subunit 3 (Cytoch... 99 4e-21
sp|P33508|COX3_ANOQU Cytochrome c oxidase subunit 3 (Cytoch... 98 8e-21
sp|P00417|COX3_DROME Cytochrome c oxidase subunit 3 (Cytoch... 98 1e-20
sp|P00418|COX3_DROYA Cytochrome c oxidase subunit 3 (Cytoch... 97 2e-20
sp|P34842|COX3_ANOGA Cytochrome c oxidase subunit 3 (Cytoch... 97 2e-20
sp|P15953|COX3_WHEAT Cytochrome c oxidase subunit 3 (Cytoch... 97 2e-20
sp|P12702|COX3_PARLI Cytochrome c oxidase subunit 3 (Cytoch... 95 6e-20
sp|P92514|COX3_ARATH Cytochrome c oxidase subunit 3 (Cytoch... 95 6e-20
>sp|Q35826|COX3_SPOFR Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 147
Score = 99.8 bits (247), Expect = 3e-21
Identities = 48/105 (45%), Positives = 61/105 (58%)
Frame = +1
Query: 100 SFISYGYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGLIMLL 279
S ++ G F+TI G F Q YEY + +I ++YGS FF+ TGFHG HV +G + LL
Sbjct: 43 SQMTQGLFITIILGIYFTILQAYEYFEAPFTIADSIYGSTFFMATGFHGLHVIIGTLFLL 102
Query: 280 XXXXXXXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YGS 414
H GFE AA Y HFVDVVWLFLYI +Y +G+
Sbjct: 103 ICLIRHLNNHFSSNHHFGFEAAAWYWHFVDVVWLFLYISIYWWGN 147
>sp|P14574|COX3_LOCMI Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 263
Score = 99.4 bits (246), Expect = 3e-21
Identities = 48/100 (48%), Positives = 57/100 (57%)
Frame = +1
Query: 115 GYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGLIMLLXXXXX 294
G F T+ GF F Q+YEY + +I VYGS FF+ TGFHG HV +G LL
Sbjct: 164 GLFFTVMLGFYFTLLQMYEYWEAPFTIADAVYGSTFFVATGFHGLHVIIGTTFLLTCLIR 223
Query: 295 XXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YGS 414
H GFE AA Y HFVDVVWLFLY+ +Y +GS
Sbjct: 224 HMMNQFSSNHHFGFEAAAWYWHFVDVVWLFLYLSIYWWGS 263
>sp|P26858|COX3_MARPO Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 265
Score = 99.0 bits (245), Expect = 4e-21
Identities = 46/100 (46%), Positives = 59/100 (59%)
Frame = +1
Query: 112 YGYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGLIMLLXXXX 291
Y T+F +F FQ EYI + +I+ +YGS FF+ TGFHGFHV +G I L+
Sbjct: 164 YALIATVFLALVFTGFQGIEYIEAPFTISDGIYGSTFFLATGFHGFHVIIGTIFLIICGI 223
Query: 292 XXXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YG 411
K H GFE AA Y HFVDVVWLFL++ +Y +G
Sbjct: 224 RQYLGHFTPKHHFGFEAAAFYWHFVDVVWLFLFVSIYWWG 263
>sp|P33508|COX3_ANOQU Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 262
Score = 98.2 bits (243), Expect = 8e-21
Identities = 50/109 (45%), Positives = 61/109 (55%)
Frame = +1
Query: 88 DTDFSFISYGYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGL 267
+++ S + G F TI G F Q YEYI + +I VYGS F++ TGFHG HV +G
Sbjct: 154 ESNHSQATQGLFFTIVLGIYFSILQAYEYIEAPFTIADAVYGSTFYMATGFHGLHVLIGT 213
Query: 268 IMLLXXXXXXXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YGS 414
LL H GFE AA Y HFVDVVWLFLYI +Y +GS
Sbjct: 214 TFLLICFLRHINFHFSKNHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS 262
>sp|P00417|COX3_DROME Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 262
Score = 97.8 bits (242), Expect = 1e-20
Identities = 48/108 (44%), Positives = 60/108 (55%)
Frame = +1
Query: 88 DTDFSFISYGYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGL 267
+ + S + G F T+ G F Q YEYI + +I ++YGS FF+ TGFHG HV +G
Sbjct: 154 ENNHSQTTQGLFFTVLLGIYFTILQAYEYIEAPFTIADSIYGSTFFMATGFHGIHVLIGT 213
Query: 268 IMLLXXXXXXXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YG 411
LL H GFE AA Y HFVDVVWLFLYI +Y +G
Sbjct: 214 TFLLVCLLRHLNNHFSKNHHFGFEAAAWYWHFVDVVWLFLYITIYWWG 261
>sp|P00418|COX3_DROYA Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 262
Score = 97.1 bits (240), Expect = 2e-20
Identities = 48/108 (44%), Positives = 61/108 (56%)
Frame = +1
Query: 88 DTDFSFISYGYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGL 267
+++ S + G F T+ G F Q YEYI + +I +VYGS F++ TGFHG HV +G
Sbjct: 154 ESNHSQTTQGLFFTVLLGIYFTILQAYEYIEAPFTIADSVYGSTFYMATGFHGVHVLIGT 213
Query: 268 IMLLXXXXXXXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YG 411
LL H GFE AA Y HFVDVVWLFLYI +Y +G
Sbjct: 214 TFLLVCLLRHLNNHFSKNHHFGFEAAAWYWHFVDVVWLFLYITIYWWG 261
>sp|P34842|COX3_ANOGA Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 262
Score = 97.1 bits (240), Expect = 2e-20
Identities = 49/100 (49%), Positives = 56/100 (56%)
Frame = +1
Query: 115 GYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGLIMLLXXXXX 294
G F TI G F Q YEYI + +I VYGS F++ TGFHG HV +G LL
Sbjct: 163 GLFFTIVLGVYFTILQAYEYIEAPFTIADAVYGSTFYMATGFHGLHVLIGTTFLLICFLR 222
Query: 295 XXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YGS 414
H GFE AA Y HFVDVVWLFLYI +Y +GS
Sbjct: 223 HINYHFSKNHHFGFEAAAWYWHFVDVVWLFLYITIYWWGS 262
>sp|P15953|COX3_WHEAT Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 265
Score = 96.7 bits (239), Expect = 2e-20
Identities = 44/100 (44%), Positives = 59/100 (59%)
Frame = +1
Query: 112 YGYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGLIMLLXXXX 291
Y T+ +F FQ EY + +I+ ++YGS FF+ TGFHGFHV +G + L+
Sbjct: 164 YALVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIVCGI 223
Query: 292 XXXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YG 411
K HVGFE AA Y HFVDVVWLFL++ +Y +G
Sbjct: 224 RQYLGQMTKKHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 263
>sp|P12702|COX3_PARLI Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 261
Score = 95.1 bits (235), Expect = 6e-20
Identities = 46/98 (46%), Positives = 57/98 (58%)
Frame = +1
Query: 121 FVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGLIMLLXXXXXXX 300
F+T+ G F Q +EYI + +I +VYGS FF+ TGFHG HV +G LL
Sbjct: 164 FLTVVLGIYFTILQAWEYIDAPFTIADSVYGSTFFVATGFHGLHVIIGTTFLLVCLIRLS 223
Query: 301 XXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YGS 414
H GFE AA Y HFVDVVWLFLY+ +Y +GS
Sbjct: 224 GHHFSTHHHFGFEAAAWYWHFVDVVWLFLYVCIYWWGS 261
>sp|P92514|COX3_ARATH Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 265
Score = 95.1 bits (235), Expect = 6e-20
Identities = 43/100 (43%), Positives = 59/100 (59%)
Frame = +1
Query: 112 YGYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGLIMLLXXXX 291
Y T+ +F FQ EY + +I+ ++YGS FF+ TGFHGFHV +G + L+
Sbjct: 164 YALVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGI 223
Query: 292 XXXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YG 411
+ HVGFE AA Y HFVDVVWLFL++ +Y +G
Sbjct: 224 RQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 263
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,093,790
Number of Sequences: 369166
Number of extensions: 509017
Number of successful extensions: 1833
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1779
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)