Planaria EST Database


DrC_01319

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01319
         (457 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q35826|COX3_SPOFR  Cytochrome c oxidase subunit 3 (Cytoch...   100   3e-21
sp|P14574|COX3_LOCMI  Cytochrome c oxidase subunit 3 (Cytoch...    99   3e-21
sp|P26858|COX3_MARPO  Cytochrome c oxidase subunit 3 (Cytoch...    99   4e-21
sp|P33508|COX3_ANOQU  Cytochrome c oxidase subunit 3 (Cytoch...    98   8e-21
sp|P00417|COX3_DROME  Cytochrome c oxidase subunit 3 (Cytoch...    98   1e-20
sp|P00418|COX3_DROYA  Cytochrome c oxidase subunit 3 (Cytoch...    97   2e-20
sp|P34842|COX3_ANOGA  Cytochrome c oxidase subunit 3 (Cytoch...    97   2e-20
sp|P15953|COX3_WHEAT  Cytochrome c oxidase subunit 3 (Cytoch...    97   2e-20
sp|P12702|COX3_PARLI  Cytochrome c oxidase subunit 3 (Cytoch...    95   6e-20
sp|P92514|COX3_ARATH  Cytochrome c oxidase subunit 3 (Cytoch...    95   6e-20
>sp|Q35826|COX3_SPOFR Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
           III)
          Length = 147

 Score = 99.8 bits (247), Expect = 3e-21
 Identities = 48/105 (45%), Positives = 61/105 (58%)
 Frame = +1

Query: 100 SFISYGYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGLIMLL 279
           S ++ G F+TI  G  F   Q YEY  +  +I  ++YGS FF+ TGFHG HV +G + LL
Sbjct: 43  SQMTQGLFITIILGIYFTILQAYEYFEAPFTIADSIYGSTFFMATGFHGLHVIIGTLFLL 102

Query: 280 XXXXXXXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YGS 414
                          H GFE AA Y HFVDVVWLFLYI +Y +G+
Sbjct: 103 ICLIRHLNNHFSSNHHFGFEAAAWYWHFVDVVWLFLYISIYWWGN 147
>sp|P14574|COX3_LOCMI Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
           III)
          Length = 263

 Score = 99.4 bits (246), Expect = 3e-21
 Identities = 48/100 (48%), Positives = 57/100 (57%)
 Frame = +1

Query: 115 GYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGLIMLLXXXXX 294
           G F T+  GF F   Q+YEY  +  +I   VYGS FF+ TGFHG HV +G   LL     
Sbjct: 164 GLFFTVMLGFYFTLLQMYEYWEAPFTIADAVYGSTFFVATGFHGLHVIIGTTFLLTCLIR 223

Query: 295 XXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YGS 414
                     H GFE AA Y HFVDVVWLFLY+ +Y +GS
Sbjct: 224 HMMNQFSSNHHFGFEAAAWYWHFVDVVWLFLYLSIYWWGS 263
>sp|P26858|COX3_MARPO Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
           III)
          Length = 265

 Score = 99.0 bits (245), Expect = 4e-21
 Identities = 46/100 (46%), Positives = 59/100 (59%)
 Frame = +1

Query: 112 YGYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGLIMLLXXXX 291
           Y    T+F   +F  FQ  EYI +  +I+  +YGS FF+ TGFHGFHV +G I L+    
Sbjct: 164 YALIATVFLALVFTGFQGIEYIEAPFTISDGIYGSTFFLATGFHGFHVIIGTIFLIICGI 223

Query: 292 XXXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YG 411
                    K H GFE AA Y HFVDVVWLFL++ +Y +G
Sbjct: 224 RQYLGHFTPKHHFGFEAAAFYWHFVDVVWLFLFVSIYWWG 263
>sp|P33508|COX3_ANOQU Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
           III)
          Length = 262

 Score = 98.2 bits (243), Expect = 8e-21
 Identities = 50/109 (45%), Positives = 61/109 (55%)
 Frame = +1

Query: 88  DTDFSFISYGYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGL 267
           +++ S  + G F TI  G  F   Q YEYI +  +I   VYGS F++ TGFHG HV +G 
Sbjct: 154 ESNHSQATQGLFFTIVLGIYFSILQAYEYIEAPFTIADAVYGSTFYMATGFHGLHVLIGT 213

Query: 268 IMLLXXXXXXXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YGS 414
             LL               H GFE AA Y HFVDVVWLFLYI +Y +GS
Sbjct: 214 TFLLICFLRHINFHFSKNHHFGFEAAAWYWHFVDVVWLFLYISIYWWGS 262
>sp|P00417|COX3_DROME Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
           III)
          Length = 262

 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 48/108 (44%), Positives = 60/108 (55%)
 Frame = +1

Query: 88  DTDFSFISYGYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGL 267
           + + S  + G F T+  G  F   Q YEYI +  +I  ++YGS FF+ TGFHG HV +G 
Sbjct: 154 ENNHSQTTQGLFFTVLLGIYFTILQAYEYIEAPFTIADSIYGSTFFMATGFHGIHVLIGT 213

Query: 268 IMLLXXXXXXXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YG 411
             LL               H GFE AA Y HFVDVVWLFLYI +Y +G
Sbjct: 214 TFLLVCLLRHLNNHFSKNHHFGFEAAAWYWHFVDVVWLFLYITIYWWG 261
>sp|P00418|COX3_DROYA Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
           III)
          Length = 262

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 48/108 (44%), Positives = 61/108 (56%)
 Frame = +1

Query: 88  DTDFSFISYGYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGL 267
           +++ S  + G F T+  G  F   Q YEYI +  +I  +VYGS F++ TGFHG HV +G 
Sbjct: 154 ESNHSQTTQGLFFTVLLGIYFTILQAYEYIEAPFTIADSVYGSTFYMATGFHGVHVLIGT 213

Query: 268 IMLLXXXXXXXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YG 411
             LL               H GFE AA Y HFVDVVWLFLYI +Y +G
Sbjct: 214 TFLLVCLLRHLNNHFSKNHHFGFEAAAWYWHFVDVVWLFLYITIYWWG 261
>sp|P34842|COX3_ANOGA Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
           III)
          Length = 262

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 49/100 (49%), Positives = 56/100 (56%)
 Frame = +1

Query: 115 GYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGLIMLLXXXXX 294
           G F TI  G  F   Q YEYI +  +I   VYGS F++ TGFHG HV +G   LL     
Sbjct: 163 GLFFTIVLGVYFTILQAYEYIEAPFTIADAVYGSTFYMATGFHGLHVLIGTTFLLICFLR 222

Query: 295 XXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YGS 414
                     H GFE AA Y HFVDVVWLFLYI +Y +GS
Sbjct: 223 HINYHFSKNHHFGFEAAAWYWHFVDVVWLFLYITIYWWGS 262
>sp|P15953|COX3_WHEAT Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
           III)
          Length = 265

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 44/100 (44%), Positives = 59/100 (59%)
 Frame = +1

Query: 112 YGYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGLIMLLXXXX 291
           Y    T+    +F  FQ  EY  +  +I+ ++YGS FF+ TGFHGFHV +G + L+    
Sbjct: 164 YALVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIVCGI 223

Query: 292 XXXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YG 411
                    K HVGFE AA Y HFVDVVWLFL++ +Y +G
Sbjct: 224 RQYLGQMTKKHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 263
>sp|P12702|COX3_PARLI Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
           III)
          Length = 261

 Score = 95.1 bits (235), Expect = 6e-20
 Identities = 46/98 (46%), Positives = 57/98 (58%)
 Frame = +1

Query: 121 FVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGLIMLLXXXXXXX 300
           F+T+  G  F   Q +EYI +  +I  +VYGS FF+ TGFHG HV +G   LL       
Sbjct: 164 FLTVVLGIYFTILQAWEYIDAPFTIADSVYGSTFFVATGFHGLHVIIGTTFLLVCLIRLS 223

Query: 301 XXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YGS 414
                   H GFE AA Y HFVDVVWLFLY+ +Y +GS
Sbjct: 224 GHHFSTHHHFGFEAAAWYWHFVDVVWLFLYVCIYWWGS 261
>sp|P92514|COX3_ARATH Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
           III)
          Length = 265

 Score = 95.1 bits (235), Expect = 6e-20
 Identities = 43/100 (43%), Positives = 59/100 (59%)
 Frame = +1

Query: 112 YGYFVTIFFGFLFLSFQLYEYIHSYLSINSTVYGSIFFILTGFHGFHVFLGLIMLLXXXX 291
           Y    T+    +F  FQ  EY  +  +I+ ++YGS FF+ TGFHGFHV +G + L+    
Sbjct: 164 YALVATVLLALVFTGFQGMEYYQAPFTISDSIYGSTFFLATGFHGFHVIIGTLFLIICGI 223

Query: 292 XXXXXXXXXKDHVGFECAA*Y*HFVDVVWLFLYIFVY*YG 411
                    + HVGFE AA Y HFVDVVWLFL++ +Y +G
Sbjct: 224 RQYLGHLTKEHHVGFEAAAWYWHFVDVVWLFLFVSIYWWG 263
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,093,790
Number of Sequences: 369166
Number of extensions: 509017
Number of successful extensions: 1833
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1779
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)