Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01316
(649 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WXS8|ATS14_HUMAN ADAMTS-14 precursor (A disintegrin an... 32 1.1
sp|Q7M878|PANB_WOLSU 3-methyl-2-oxobutanoate hydroxymethylt... 30 5.4
>sp|Q8WXS8|ATS14_HUMAN ADAMTS-14 precursor (A disintegrin and metalloproteinase with
thrombospondin motifs 14) (ADAM-TS 14) (ADAM-TS14)
Length = 1223
Score = 32.3 bits (72), Expect = 1.1
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 363 ISHNLPINCAICSGWGTRTPPPRIKGYSNMLGIS 464
+S+ LP++CA+C+ G+RTP + G + G++
Sbjct: 8 LSYLLPLHCALCAAAGSRTPELHLSGKLSDYGVT 41
>sp|Q7M878|PANB_WOLSU 3-methyl-2-oxobutanoate hydroxymethyltransferase (Ketopantoate
hydroxymethyltransferase)
Length = 262
Score = 30.0 bits (66), Expect = 5.4
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2
Query: 419 AATTHQGVLEYARDIRKGRF 478
A+ QGV EYA+D+R+GRF
Sbjct: 236 ASLIRQGVREYAKDVREGRF 255
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,106,468
Number of Sequences: 369166
Number of extensions: 951421
Number of successful extensions: 2248
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2241
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5316264630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)