Planaria EST Database


DrC_01303

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01303
         (665 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CIF6|SIDT2_MOUSE  SID1 transmembrane family member 2 pr...    55   2e-07
sp|Q8NBJ9|SIDT2_HUMAN  SID1 transmembrane family member 2 pr...    55   2e-07
sp|Q9NXL6|SIDT1_HUMAN  SID1 transmembrane family member 1 pr...    54   3e-07
sp|Q6Q3F5|SIDT1_RAT  SID1 transmembrane family member 1 prec...    53   8e-07
sp|Q6AXF6|SIDT1_MOUSE  SID1 transmembrane family member 1 pr...    51   2e-06
sp|O00507|USP9Y_HUMAN  Probable ubiquitin carboxyl-terminal ...    32   1.1  
sp|Q9GZC8|SID1_CAEEL  Systemic RNA interference defective pr...    30   4.3  
sp|P05135|SPIKE_IBV6  Spike glycoprotein precursor (Peplomer...    30   5.7  
sp|P56698|CAC1B_DISOM  Probable voltage-dependent N-type cal...    30   7.4  
sp|P44170|YD76_HAEIN  Hypothetical protein HI1376                  29   9.7  
>sp|Q8CIF6|SIDT2_MOUSE SID1 transmembrane family member 2 precursor
          Length = 832

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 22/70 (31%), Positives = 44/70 (62%)
 Frame = +3

Query: 309 YGILRRPNNFSLYLMSILMINMSLYFGYYVIMKIIFKEKLNKTTLMFLLLAIICWTSGIY 488
           YG++ RPN+F+ YL++I + N+ LYF +Y+IMK+   E++    L+ ++   + W   ++
Sbjct: 705 YGLIMRPNDFASYLLAIGICNLLLYFAFYIIMKLRSGERIKLIPLLCIVCTSVVWGFALF 764

Query: 489 CFLKHPTNYQ 518
            F +  + +Q
Sbjct: 765 FFFQGLSTWQ 774
>sp|Q8NBJ9|SIDT2_HUMAN SID1 transmembrane family member 2 precursor
          Length = 832

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 22/70 (31%), Positives = 44/70 (62%)
 Frame = +3

Query: 309 YGILRRPNNFSLYLMSILMINMSLYFGYYVIMKIIFKEKLNKTTLMFLLLAIICWTSGIY 488
           YG++ RPN+F+ YL++I + N+ LYF +Y+IMK+   E++    L+ ++   + W   ++
Sbjct: 705 YGLIMRPNDFASYLLAIGICNLLLYFAFYIIMKLRSGERIKLIPLLCIVCTSVVWGFALF 764

Query: 489 CFLKHPTNYQ 518
            F +  + +Q
Sbjct: 765 FFFQGLSTWQ 774
>sp|Q9NXL6|SIDT1_HUMAN SID1 transmembrane family member 1 precursor
          Length = 827

 Score = 54.3 bits (129), Expect = 3e-07
 Identities = 19/72 (26%), Positives = 45/72 (62%)
 Frame = +3

Query: 303 SIYGILRRPNNFSLYLMSILMINMSLYFGYYVIMKIIFKEKLNKTTLMFLLLAIICWTSG 482
           +++G++ RP +F+ Y++ I + N+ LY  +Y+IMK+   EK+    L  ++   + W + 
Sbjct: 698 ALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVMWAAA 757

Query: 483 IYCFLKHPTNYQ 518
           +Y F ++ ++++
Sbjct: 758 LYFFFQNLSSWE 769
>sp|Q6Q3F5|SIDT1_RAT SID1 transmembrane family member 1 precursor
          Length = 831

 Score = 52.8 bits (125), Expect = 8e-07
 Identities = 18/72 (25%), Positives = 45/72 (62%)
 Frame = +3

Query: 303 SIYGILRRPNNFSLYLMSILMINMSLYFGYYVIMKIIFKEKLNKTTLMFLLLAIICWTSG 482
           +++G++ RP +F+ Y++ I + N+ LY  +Y+IMK+   EK+    +  ++   + W + 
Sbjct: 702 ALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPLPVFCIVATAVVWAAA 761

Query: 483 IYCFLKHPTNYQ 518
           +Y F ++ ++++
Sbjct: 762 LYFFFQNLSSWE 773
>sp|Q6AXF6|SIDT1_MOUSE SID1 transmembrane family member 1 precursor
          Length = 827

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 18/72 (25%), Positives = 43/72 (59%)
 Frame = +3

Query: 303 SIYGILRRPNNFSLYLMSILMINMSLYFGYYVIMKIIFKEKLNKTTLMFLLLAIICWTSG 482
           + +G++ RP +F+ Y++ I + N+ LY  +Y+IMK+   EK+    +  +    + W + 
Sbjct: 698 AFFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPLPVFCIAATAVVWAAA 757

Query: 483 IYCFLKHPTNYQ 518
           +Y F ++ ++++
Sbjct: 758 LYFFFQNLSSWE 769
>sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-Y (Ubiquitin
            thiolesterase FAF-Y) (Ubiquitin specific-processing
            protease FAF-Y) (Deubiquitinating enzyme FAF-Y) (Fat
            facets protein related, Y-linked) (Ubiquitin-specific
            protease 9, Y chromosome)
          Length = 2555

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = -2

Query: 358  IDIKYNEKLFGLLNIP*IDLISFKRLRETF--PSLKSQKYSTSLFIR*NHRNHFREGYII 185
            ID + + KL G LN+    LI+ K  +  F  PS       +S     NHRNH+ +G  +
Sbjct: 942  IDSENDRKLIGQLNLKDKSLITAKLTQINFNMPSSPDSSSDSSTASPGNHRNHYNDGPNL 1001

Query: 184  TVSDTVHHYLFSNKP 140
             V   +   + S  P
Sbjct: 1002 KVESCLPGVIMSVHP 1016
>sp|Q9GZC8|SID1_CAEEL Systemic RNA interference defective protein 1 precursor (Systemic
           RNAi enabling protein)
          Length = 776

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 12/51 (23%), Positives = 26/51 (50%)
 Frame = +3

Query: 363 MINMSLYFGYYVIMKIIFKEKLNKTTLMFLLLAIICWTSGIYCFLKHPTNY 515
           +IN  +Y  YY  MK++  E++     +   L+++ W    + F +  T++
Sbjct: 667 IINCIMYLMYYGCMKVLHSERITSKAKLCGALSLLAWAVAGFFFFQDDTDW 717
>sp|P05135|SPIKE_IBV6 Spike glycoprotein precursor (Peplomer protein) (E2) [Contains: Spike
            protein S1; Spike protein S2]
          Length = 1163

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 21/81 (25%), Positives = 42/81 (51%)
 Frame = +3

Query: 231  KSEVLYFWDFNEGKVSLSLLKEIRSIYGILRRPNNFSLYLMSILMINMSLYFGYYVIMKI 410
            K E+  F +FN     L +  EI  I G+++  N+  + L ++ ++   + + +YV + I
Sbjct: 1042 KHELPDFDEFNYTVPILDIGSEIDRIQGVIQGLNDSLIDLETLSILKTYIKWPWYVWLAI 1101

Query: 411  IFKEKLNKTTLMFLLLAIICW 473
             F       T++F+L  ++CW
Sbjct: 1102 AF------LTIIFIL--VLCW 1114
>sp|P56698|CAC1B_DISOM Probable voltage-dependent N-type calcium channel alpha-1B subunit
           (Voltage-gated calcium channel alpha subunit Cav2.2)
           (DOE-4)
          Length = 2326

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
 Frame = -1

Query: 638 FKYTKYFK-YTSFELYKLFSLK-YFNLIFVLFL*AVIYVLQNL-IIGGMF*KTIDATSPT 468
           FK TKY+    +  +  L S+K   +L+F+LFL  V++ L  + + GG F    D T PT
Sbjct: 576 FKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQF-NFEDGTPPT 634

Query: 467 N 465
           N
Sbjct: 635 N 635
>sp|P44170|YD76_HAEIN Hypothetical protein HI1376
          Length = 291

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 24/100 (24%), Positives = 45/100 (45%)
 Frame = +3

Query: 246 YFWDFNEGKVSLSLLKEIRSIYGILRRPNNFSLYLMSILMINMSLYFGYYVIMKIIFKEK 425
           Y        + L+L   + S++ I+ +   F+  + S     +SL+        +IF E 
Sbjct: 59  YIAQSENSPIFLALGLLLPSVFIIMSKAVEFAGIVRSDAAQRLSLFLPILAAF-LIFHET 117

Query: 426 LNKTTLMFLLLAIICWTSGIYCFLKHPTNYQVLQNIDNCL 545
           L+++ ++ ++LA I    G++C L  PT  Q   N    L
Sbjct: 118 LSQSKIIGVVLAFI----GLFCLLTKPTQGQSAVNFKGVL 153
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,048,383
Number of Sequences: 369166
Number of extensions: 1292865
Number of successful extensions: 2721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2721
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)