Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01303
(665 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8CIF6|SIDT2_MOUSE SID1 transmembrane family member 2 pr... 55 2e-07
sp|Q8NBJ9|SIDT2_HUMAN SID1 transmembrane family member 2 pr... 55 2e-07
sp|Q9NXL6|SIDT1_HUMAN SID1 transmembrane family member 1 pr... 54 3e-07
sp|Q6Q3F5|SIDT1_RAT SID1 transmembrane family member 1 prec... 53 8e-07
sp|Q6AXF6|SIDT1_MOUSE SID1 transmembrane family member 1 pr... 51 2e-06
sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal ... 32 1.1
sp|Q9GZC8|SID1_CAEEL Systemic RNA interference defective pr... 30 4.3
sp|P05135|SPIKE_IBV6 Spike glycoprotein precursor (Peplomer... 30 5.7
sp|P56698|CAC1B_DISOM Probable voltage-dependent N-type cal... 30 7.4
sp|P44170|YD76_HAEIN Hypothetical protein HI1376 29 9.7
>sp|Q8CIF6|SIDT2_MOUSE SID1 transmembrane family member 2 precursor
Length = 832
Score = 54.7 bits (130), Expect = 2e-07
Identities = 22/70 (31%), Positives = 44/70 (62%)
Frame = +3
Query: 309 YGILRRPNNFSLYLMSILMINMSLYFGYYVIMKIIFKEKLNKTTLMFLLLAIICWTSGIY 488
YG++ RPN+F+ YL++I + N+ LYF +Y+IMK+ E++ L+ ++ + W ++
Sbjct: 705 YGLIMRPNDFASYLLAIGICNLLLYFAFYIIMKLRSGERIKLIPLLCIVCTSVVWGFALF 764
Query: 489 CFLKHPTNYQ 518
F + + +Q
Sbjct: 765 FFFQGLSTWQ 774
>sp|Q8NBJ9|SIDT2_HUMAN SID1 transmembrane family member 2 precursor
Length = 832
Score = 54.7 bits (130), Expect = 2e-07
Identities = 22/70 (31%), Positives = 44/70 (62%)
Frame = +3
Query: 309 YGILRRPNNFSLYLMSILMINMSLYFGYYVIMKIIFKEKLNKTTLMFLLLAIICWTSGIY 488
YG++ RPN+F+ YL++I + N+ LYF +Y+IMK+ E++ L+ ++ + W ++
Sbjct: 705 YGLIMRPNDFASYLLAIGICNLLLYFAFYIIMKLRSGERIKLIPLLCIVCTSVVWGFALF 764
Query: 489 CFLKHPTNYQ 518
F + + +Q
Sbjct: 765 FFFQGLSTWQ 774
>sp|Q9NXL6|SIDT1_HUMAN SID1 transmembrane family member 1 precursor
Length = 827
Score = 54.3 bits (129), Expect = 3e-07
Identities = 19/72 (26%), Positives = 45/72 (62%)
Frame = +3
Query: 303 SIYGILRRPNNFSLYLMSILMINMSLYFGYYVIMKIIFKEKLNKTTLMFLLLAIICWTSG 482
+++G++ RP +F+ Y++ I + N+ LY +Y+IMK+ EK+ L ++ + W +
Sbjct: 698 ALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVMWAAA 757
Query: 483 IYCFLKHPTNYQ 518
+Y F ++ ++++
Sbjct: 758 LYFFFQNLSSWE 769
>sp|Q6Q3F5|SIDT1_RAT SID1 transmembrane family member 1 precursor
Length = 831
Score = 52.8 bits (125), Expect = 8e-07
Identities = 18/72 (25%), Positives = 45/72 (62%)
Frame = +3
Query: 303 SIYGILRRPNNFSLYLMSILMINMSLYFGYYVIMKIIFKEKLNKTTLMFLLLAIICWTSG 482
+++G++ RP +F+ Y++ I + N+ LY +Y+IMK+ EK+ + ++ + W +
Sbjct: 702 ALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPLPVFCIVATAVVWAAA 761
Query: 483 IYCFLKHPTNYQ 518
+Y F ++ ++++
Sbjct: 762 LYFFFQNLSSWE 773
>sp|Q6AXF6|SIDT1_MOUSE SID1 transmembrane family member 1 precursor
Length = 827
Score = 51.2 bits (121), Expect = 2e-06
Identities = 18/72 (25%), Positives = 43/72 (59%)
Frame = +3
Query: 303 SIYGILRRPNNFSLYLMSILMINMSLYFGYYVIMKIIFKEKLNKTTLMFLLLAIICWTSG 482
+ +G++ RP +F+ Y++ I + N+ LY +Y+IMK+ EK+ + + + W +
Sbjct: 698 AFFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPLPVFCIAATAVVWAAA 757
Query: 483 IYCFLKHPTNYQ 518
+Y F ++ ++++
Sbjct: 758 LYFFFQNLSSWE 769
>sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-Y (Ubiquitin
thiolesterase FAF-Y) (Ubiquitin specific-processing
protease FAF-Y) (Deubiquitinating enzyme FAF-Y) (Fat
facets protein related, Y-linked) (Ubiquitin-specific
protease 9, Y chromosome)
Length = 2555
Score = 32.3 bits (72), Expect = 1.1
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -2
Query: 358 IDIKYNEKLFGLLNIP*IDLISFKRLRETF--PSLKSQKYSTSLFIR*NHRNHFREGYII 185
ID + + KL G LN+ LI+ K + F PS +S NHRNH+ +G +
Sbjct: 942 IDSENDRKLIGQLNLKDKSLITAKLTQINFNMPSSPDSSSDSSTASPGNHRNHYNDGPNL 1001
Query: 184 TVSDTVHHYLFSNKP 140
V + + S P
Sbjct: 1002 KVESCLPGVIMSVHP 1016
>sp|Q9GZC8|SID1_CAEEL Systemic RNA interference defective protein 1 precursor (Systemic
RNAi enabling protein)
Length = 776
Score = 30.4 bits (67), Expect = 4.3
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +3
Query: 363 MINMSLYFGYYVIMKIIFKEKLNKTTLMFLLLAIICWTSGIYCFLKHPTNY 515
+IN +Y YY MK++ E++ + L+++ W + F + T++
Sbjct: 667 IINCIMYLMYYGCMKVLHSERITSKAKLCGALSLLAWAVAGFFFFQDDTDW 717
>sp|P05135|SPIKE_IBV6 Spike glycoprotein precursor (Peplomer protein) (E2) [Contains: Spike
protein S1; Spike protein S2]
Length = 1163
Score = 30.0 bits (66), Expect = 5.7
Identities = 21/81 (25%), Positives = 42/81 (51%)
Frame = +3
Query: 231 KSEVLYFWDFNEGKVSLSLLKEIRSIYGILRRPNNFSLYLMSILMINMSLYFGYYVIMKI 410
K E+ F +FN L + EI I G+++ N+ + L ++ ++ + + +YV + I
Sbjct: 1042 KHELPDFDEFNYTVPILDIGSEIDRIQGVIQGLNDSLIDLETLSILKTYIKWPWYVWLAI 1101
Query: 411 IFKEKLNKTTLMFLLLAIICW 473
F T++F+L ++CW
Sbjct: 1102 AF------LTIIFIL--VLCW 1114
>sp|P56698|CAC1B_DISOM Probable voltage-dependent N-type calcium channel alpha-1B subunit
(Voltage-gated calcium channel alpha subunit Cav2.2)
(DOE-4)
Length = 2326
Score = 29.6 bits (65), Expect = 7.4
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = -1
Query: 638 FKYTKYFK-YTSFELYKLFSLK-YFNLIFVLFL*AVIYVLQNL-IIGGMF*KTIDATSPT 468
FK TKY+ + + L S+K +L+F+LFL V++ L + + GG F D T PT
Sbjct: 576 FKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQF-NFEDGTPPT 634
Query: 467 N 465
N
Sbjct: 635 N 635
>sp|P44170|YD76_HAEIN Hypothetical protein HI1376
Length = 291
Score = 29.3 bits (64), Expect = 9.7
Identities = 24/100 (24%), Positives = 45/100 (45%)
Frame = +3
Query: 246 YFWDFNEGKVSLSLLKEIRSIYGILRRPNNFSLYLMSILMINMSLYFGYYVIMKIIFKEK 425
Y + L+L + S++ I+ + F+ + S +SL+ +IF E
Sbjct: 59 YIAQSENSPIFLALGLLLPSVFIIMSKAVEFAGIVRSDAAQRLSLFLPILAAF-LIFHET 117
Query: 426 LNKTTLMFLLLAIICWTSGIYCFLKHPTNYQVLQNIDNCL 545
L+++ ++ ++LA I G++C L PT Q N L
Sbjct: 118 LSQSKIIGVVLAFI----GLFCLLTKPTQGQSAVNFKGVL 153
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,048,383
Number of Sequences: 369166
Number of extensions: 1292865
Number of successful extensions: 2721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2721
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5608903050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)