Planaria EST Database


DrC_01301

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01301
         (475 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q06841|NO75_LUPLU  Early nodulin 75 protein (N-75) (NGM-75)     34   0.15 
sp|P64544|YPEC_SHIFL  Hypothetical protein ypeC precursor >g...    34   0.15 
sp|Q62635|MUC2_RAT  Mucin-2 precursor (Intestinal mucin 2)         33   0.25 
sp|Q9I9A2|RX2_ORYLA  Retinal homeobox protein Rx2                  33   0.25 
sp|P08297|NO75_SOYBN  Early nodulin 75 precursor (N-75) (NGM...    33   0.43 
sp|Q9I9D5|RX1_ASTFA  Retinal homeobox protein Rx1                  33   0.43 
sp|O15534|PER1_HUMAN  Period circadian protein 1 (Circadian ...    32   0.74 
sp|Q64MP7|SYM_BACFR  Methionyl-tRNA synthetase (Methionine--...    32   0.97 
sp|P0A119|PRIM_PSEPU  DNA primase >gi|60392932|sp|P0A118|PRI...    31   1.3  
sp|Q20765|NHR7_CAEEL  Nuclear hormone receptor family member...    31   1.7  
>sp|Q06841|NO75_LUPLU Early nodulin 75 protein (N-75) (NGM-75)
          Length = 434

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -2

Query: 321 FTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWH 142
           + P H+ P   + P H  P I +   H  P     P+  PP     P H  P   ++P H
Sbjct: 64  YPPPHVKPPIQYPPPHEKPPIEYPLPHEKPPVYEPPYEKPPPVHPPP-HEKPPIEYSPPH 122

Query: 141 IFP 133
             P
Sbjct: 123 EKP 125

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 18/63 (28%), Positives = 23/63 (36%)
 Frame = -2

Query: 315 PRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWHIF 136
           P H  P   + P H  P + + P HV P     P   P      P H  P   F P    
Sbjct: 302 PPHEKPPIEYAPPHEKPPVEYPPPHVKP-----PVEYPSPAEKPPTHEKPPIEFPPHEKP 356

Query: 135 PIW 127
           P++
Sbjct: 357 PVY 359

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
 Frame = -2

Query: 315 PRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVP----PSTSLTPWHVSPCTSFTP 148
           P H  P     P H  P +   P+  PP     P H P    P     P H  P   + P
Sbjct: 7   PPHEKPPIVHPPPHEKPPLFEPPFEKPPPAHPPPVHPPPHEKPPIEYPPPHTKPPIEYPP 66

Query: 147 WHIFP 133
            H+ P
Sbjct: 67  PHVKP 71

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -2

Query: 315 PRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSP 166
           P H  P   + P H  P I + P H  P     P H  P     P H  P
Sbjct: 141 PPHDKPPIEYHPPHEKPPIEYPPPHEKPPIEYPPPHEKPPIEYPPPHEKP 190

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 16/50 (32%), Positives = 18/50 (36%)
 Frame = -2

Query: 315 PRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSP 166
           P H  P   + P H  P I + P HV P     P H  P       H  P
Sbjct: 44  PPHEKPPIEYPPPHTKPPIEYPPPHVKPPIQYPPPHEKPPIEYPLPHEKP 93

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/52 (28%), Positives = 19/52 (36%)
 Frame = -2

Query: 321 FTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSP 166
           + P H  P   + P H  P I + P H  P     P H  P     P+   P
Sbjct: 150 YHPPHEKPPIEYPPPHEKPPIEYPPPHEKPPIEYPPPHEKPPVYEPPYEKPP 201

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
 Frame = -2

Query: 315 PRHISPSTSFTPRHISPCISFTPWHV-----PPRTSLTPWHVPPSTSLTPWHVSPCTSFT 151
           P H  P   + P H  P +   P+       PP     P+  PP    +P H  P     
Sbjct: 238 PPHDKPPIEYPPPHEKPPVYEPPYERSPPVHPPSHEKPPFVYPPPHEKSPMHEPPYEKAP 297

Query: 150 PWHIFP 133
           P H+ P
Sbjct: 298 PVHLPP 303

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 18/64 (28%), Positives = 25/64 (39%)
 Frame = -2

Query: 324 LFTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPW 145
           ++ P +  P     P H  P I ++P H  P     P+  PP     P H  P   + P 
Sbjct: 95  VYEPPYEKPPPVHPPPHEKPPIEYSPPHEKPPVHEPPYEKPPLVHPPP-HDKPPIEYHPP 153

Query: 144 HIFP 133
           H  P
Sbjct: 154 HEKP 157

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 14/47 (29%), Positives = 18/47 (38%)
 Frame = -2

Query: 321 FTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTP 181
           + P H  P   + P H  P I + P H  P     P+  PP     P
Sbjct: 161 YPPPHEKPPIEYPPPHEKPPIEYPPPHEKPPVYEPPYEKPPPVHPPP 207

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/61 (27%), Positives = 22/61 (36%)
 Frame = -2

Query: 315 PRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWHIF 136
           P H  P   + P H    +   P+   P   L P H  P     P H  P   + P H+ 
Sbjct: 270 PSHEKPPFVYPPPHEKSPMHEPPYEKAPPVHLPP-HEKPPIEYAPPHEKPPVEYPPPHVK 328

Query: 135 P 133
           P
Sbjct: 329 P 329

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -2

Query: 321 FTPRHISPSTSFTPRHISPCISF-TPWHVPPRTSLTPWHVPP 199
           + P H  P   + P H+ P + + +P   PP     P   PP
Sbjct: 311 YAPPHEKPPVEYPPPHVKPPVEYPSPAEKPPTHEKPPIEFPP 352

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 10/73 (13%)
 Frame = -2

Query: 321 FTPRHISPSTS----------FTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHV 172
           ++P H  P               P H  P I + P H  P     P H  P     P H 
Sbjct: 118 YSPPHEKPPVHEPPYEKPPLVHPPPHDKPPIEYHPPHEKPPIEYPPPHEKPPIEYPPPHE 177

Query: 171 SPCTSFTPWHIFP 133
            P   + P H  P
Sbjct: 178 KPPIEYPPPHEKP 190
>sp|P64544|YPEC_SHIFL Hypothetical protein ypeC precursor
 sp|P64543|YPEC_ECO57 Hypothetical protein ypeC precursor
 sp|P64542|YPEC_ECOLI Hypothetical protein ypeC precursor
          Length = 108

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
 Frame = +1

Query: 40  LFIFGTLIVGFQICINASSSDLINVLEKRPNWKDM--PWGKRGAWRDMP-WGKRSAWRDM 210
           LF+   L+    +  NA    L+  ++ +   +D    +   G WRD   W +   WR  
Sbjct: 5   LFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYWDGGHWRDRDYWHRNYEWRKN 64

Query: 211 PWGKRSAWRDMPWGKRNAWRDMPWGKRSAWRDMP--WGKKRG 330
            W +        W KR A+     G R  WRD     GK RG
Sbjct: 65  RWWRHDNGYHRGWDKRKAYER---GYREGWRDRDDHRGKGRG 103
>sp|Q62635|MUC2_RAT Mucin-2 precursor (Intestinal mucin 2)
          Length = 1513

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 24/60 (40%), Positives = 27/60 (45%)
 Frame = -2

Query: 330  TSLFTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFT 151
            TS  T    SP+TS     +SP  S T     P TS T     P+TS T    SP TS T
Sbjct: 1415 TSPLTSSATSPTTSHITSTVSPTTSPTTSTTSPTTSPTTSTTSPTTSTTSPTPSPTTSTT 1474

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 22/52 (42%), Positives = 25/52 (48%)
 Frame = -2

Query: 306  ISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFT 151
            +SP+TS T    SP  S T     P TS T     P+TS T    SP TS T
Sbjct: 1434 VSPTTSPTTSTTSPTTSPTTSTTSPTTSTTSPTPSPTTSTTSPTPSPTTSTT 1485

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 25/60 (41%), Positives = 27/60 (45%)
 Frame = -2

Query: 303  SPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWHIFPIWS 124
            SP+TS T    SP  S T     P TS T     P+TS T    SP TS T     PI S
Sbjct: 1446 SPTTSPTTSTTSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTTSPITS 1505

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 22/51 (43%), Positives = 24/51 (47%)
 Frame = -2

Query: 303  SPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFT 151
            SP+TS T    SP  S T     P TS T     P+TS T    SP TS T
Sbjct: 1457 SPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTTSPITSPT 1507

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 25/70 (35%), Positives = 33/70 (47%)
 Frame = -2

Query: 360  CNFV*RYILITSLFTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTP 181
            C F   Y L T       +SP+TS TP   +P  + +P  +P  + LT     P+TS   
Sbjct: 1380 CCFPMEYCLST-------VSPTTS-TPISSTPQPTSSPTTLPTTSPLTSSATSPTTSHIT 1431

Query: 180  WHVSPCTSFT 151
              VSP TS T
Sbjct: 1432 STVSPTTSPT 1441
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2
          Length = 327

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
 Frame = -2

Query: 294 TSFTPRHISPCISFTPWHVPPRTS-------LTPWHVPPSTSLTPWHVSPCTSFTPWHIF 136
           TS    H SP +SF    +PP          L PW   P +S TP H  P    +P  + 
Sbjct: 200 TSTMKLHDSPMLSFNRPPMPPSVGQVANPMPLDPWLTSPISSATPMHTIPGFMSSPQTLQ 259

Query: 135 PIWS 124
           P +S
Sbjct: 260 PTYS 263
>sp|P08297|NO75_SOYBN Early nodulin 75 precursor (N-75) (NGM-75)
          Length = 309

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 18/61 (29%), Positives = 20/61 (32%)
 Frame = -2

Query: 315 PRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWHIF 136
           P H  P   + P H  P   + P H  P     P H  P     P H  P     P H  
Sbjct: 128 PPHEKPPPEYEPPHEKPPPEYQPPHEKPPPEYQPPHEKPPPEYQPPHEKPPPEHQPPHEK 187

Query: 135 P 133
           P
Sbjct: 188 P 188

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
 Frame = -2

Query: 315 PRHISPSTSFTPRHISPCISFTPWH-VPPRTSLTPWHVPP---STSLTPWHVSPCTSFTP 148
           P H  P   + P H  P   + P H  PP  +  P H PP        P H  P   + P
Sbjct: 80  PPHEKPPPEYLPPHEKPPPEYQPPHEKPPHENPPPEHQPPHEKPPEHQPPHEKPPPEYEP 139

Query: 147 WHIFP 133
            H  P
Sbjct: 140 PHEKP 144

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/52 (28%), Positives = 18/52 (34%)
 Frame = -2

Query: 321 FTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSP 166
           + P H  P   + P H  P   + P H  P     P H  P     P H  P
Sbjct: 137 YEPPHEKPPPEYQPPHEKPPPEYQPPHEKPPPEYQPPHEKPPPEHQPPHEKP 188

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 18/63 (28%), Positives = 22/63 (34%)
 Frame = -2

Query: 321 FTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWH 142
           + P H  P   + P H  P   + P H  P     P H  P     P H  P   + P H
Sbjct: 148 YQPPHEKPPPEYQPPHEKPPPEYQPPHEKPPPEHQPPHEKPPEHQPP-HEKPPPEYQPPH 206

Query: 141 IFP 133
             P
Sbjct: 207 EKP 209

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
 Frame = -2

Query: 315 PRHISPSTSFTPRHISPCISFTPWH-VPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWHI 139
           P H  P   + P H  P     P H  PP     P+  PP     P+   P   + P H 
Sbjct: 220 PPHEKPPPEYQPPHEKPPPEHQPPHEKPPPVYPPPYEKPPPVYEPPYEKPPPVVYPPPHE 279

Query: 138 FP 133
            P
Sbjct: 280 KP 281
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1
          Length = 334

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 20/48 (41%), Positives = 24/48 (50%)
 Frame = -2

Query: 276 HISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWHIFP 133
           H SP +SF     P  T++ P  +  S  L PW  SP TS TP H  P
Sbjct: 211 HDSPMLSFN--RPPMHTNVGP--MSNSLPLDPWLTSPLTSTTPVHSIP 254
>sp|O15534|PER1_HUMAN Period circadian protein 1 (Circadian pacemaker protein Rigui)
           (hPER)
          Length = 1290

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = -2

Query: 282 PRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSP 166
           PR  +PC    P  VPP T   PW  PP+T+  P  V P
Sbjct: 848 PRAEAPCYVSHPSPVPPST---PWPTPPATTPFPAVVQP 883
>sp|Q64MP7|SYM_BACFR Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS)
          Length = 679

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +1

Query: 175 MPWGKRSAW-RDMPWGKRSAWRDMPWGKRNAWRDMPWGKRSAWRDMPWG 318
           +P  K   W R     +   WR   +G+  +W DM    R+  RD+ WG
Sbjct: 194 LPLDKHETWLRQWILEEHKEWRPNVYGQCKSWLDMGLQPRAVSRDLDWG 242

 Score = 31.6 bits (70), Expect = 0.97
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 112 VLEKRPNWKDMPWGKRGAWRDMPWGKRSAWRDMPWG 219
           +LE+   W+   +G+  +W DM    R+  RD+ WG
Sbjct: 207 ILEEHKEWRPNVYGQCKSWLDMGLQPRAVSRDLDWG 242

 Score = 29.3 bits (64), Expect = 4.8
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 115 LEKRPNW-KDMPWGKRGAWRDMPWGKRSAWRDMPWGKRSAWRDMPWG 252
           L+K   W +     +   WR   +G+  +W DM    R+  RD+ WG
Sbjct: 196 LDKHETWLRQWILEEHKEWRPNVYGQCKSWLDMGLQPRAVSRDLDWG 242
>sp|P0A119|PRIM_PSEPU DNA primase
 sp|P0A118|PRIM_PSEPK DNA primase
          Length = 660

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = +1

Query: 127 PNWKDMPWGKRGAWRDMPWGKRSAWRDMPWGKRSAWRDMPWGKRNAWRDMPWGKR 291
           P++ DMP          P  +  AW+    G +  W D PW K N     PW +R
Sbjct: 459 PDYGDMPQHDYA-----PVHQEQAWKPNKGGSKKPWSDKPWDK-NRKGGKPWQQR 507

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 244 PWGKRNAWRDMPWGKRSAWRDMPWGKKR 327
           P  +  AW+    G +  W D PW K R
Sbjct: 471 PVHQEQAWKPNKGGSKKPWSDKPWDKNR 498
>sp|Q20765|NHR7_CAEEL Nuclear hormone receptor family member nhr-7
          Length = 536

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 315 PRHISPSTSFTPRHISPC-ISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTS 157
           P    P   F+P  +SPC IS  P   PP+   T +   PSTS  P + SP  S
Sbjct: 412 PSDTVPLFHFSPPSLSPCQISAPP---PPQQQYTDYSQMPSTSSYPANSSPFQS 462
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,889,675
Number of Sequences: 369166
Number of extensions: 1372307
Number of successful extensions: 4401
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4316
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2783017720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)