Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01301
(475 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q06841|NO75_LUPLU Early nodulin 75 protein (N-75) (NGM-75) 34 0.15
sp|P64544|YPEC_SHIFL Hypothetical protein ypeC precursor >g... 34 0.15
sp|Q62635|MUC2_RAT Mucin-2 precursor (Intestinal mucin 2) 33 0.25
sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 33 0.25
sp|P08297|NO75_SOYBN Early nodulin 75 precursor (N-75) (NGM... 33 0.43
sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 33 0.43
sp|O15534|PER1_HUMAN Period circadian protein 1 (Circadian ... 32 0.74
sp|Q64MP7|SYM_BACFR Methionyl-tRNA synthetase (Methionine--... 32 0.97
sp|P0A119|PRIM_PSEPU DNA primase >gi|60392932|sp|P0A118|PRI... 31 1.3
sp|Q20765|NHR7_CAEEL Nuclear hormone receptor family member... 31 1.7
>sp|Q06841|NO75_LUPLU Early nodulin 75 protein (N-75) (NGM-75)
Length = 434
Score = 34.3 bits (77), Expect = 0.15
Identities = 18/63 (28%), Positives = 25/63 (39%)
Frame = -2
Query: 321 FTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWH 142
+ P H+ P + P H P I + H P P+ PP P H P ++P H
Sbjct: 64 YPPPHVKPPIQYPPPHEKPPIEYPLPHEKPPVYEPPYEKPPPVHPPP-HEKPPIEYSPPH 122
Query: 141 IFP 133
P
Sbjct: 123 EKP 125
Score = 33.9 bits (76), Expect = 0.20
Identities = 18/63 (28%), Positives = 23/63 (36%)
Frame = -2
Query: 315 PRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWHIF 136
P H P + P H P + + P HV P P P P H P F P
Sbjct: 302 PPHEKPPIEYAPPHEKPPVEYPPPHVKP-----PVEYPSPAEKPPTHEKPPIEFPPHEKP 356
Query: 135 PIW 127
P++
Sbjct: 357 PVY 359
Score = 32.7 bits (73), Expect = 0.43
Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Frame = -2
Query: 315 PRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVP----PSTSLTPWHVSPCTSFTP 148
P H P P H P + P+ PP P H P P P H P + P
Sbjct: 7 PPHEKPPIVHPPPHEKPPLFEPPFEKPPPAHPPPVHPPPHEKPPIEYPPPHTKPPIEYPP 66
Query: 147 WHIFP 133
H+ P
Sbjct: 67 PHVKP 71
Score = 32.7 bits (73), Expect = 0.43
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -2
Query: 315 PRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSP 166
P H P + P H P I + P H P P H P P H P
Sbjct: 141 PPHDKPPIEYHPPHEKPPIEYPPPHEKPPIEYPPPHEKPPIEYPPPHEKP 190
Score = 32.3 bits (72), Expect = 0.57
Identities = 16/50 (32%), Positives = 18/50 (36%)
Frame = -2
Query: 315 PRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSP 166
P H P + P H P I + P HV P P H P H P
Sbjct: 44 PPHEKPPIEYPPPHTKPPIEYPPPHVKPPIQYPPPHEKPPIEYPLPHEKP 93
Score = 31.2 bits (69), Expect = 1.3
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = -2
Query: 321 FTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSP 166
+ P H P + P H P I + P H P P H P P+ P
Sbjct: 150 YHPPHEKPPIEYPPPHEKPPIEYPPPHEKPPIEYPPPHEKPPVYEPPYEKPP 201
Score = 31.2 bits (69), Expect = 1.3
Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 5/66 (7%)
Frame = -2
Query: 315 PRHISPSTSFTPRHISPCISFTPWHV-----PPRTSLTPWHVPPSTSLTPWHVSPCTSFT 151
P H P + P H P + P+ PP P+ PP +P H P
Sbjct: 238 PPHDKPPIEYPPPHEKPPVYEPPYERSPPVHPPSHEKPPFVYPPPHEKSPMHEPPYEKAP 297
Query: 150 PWHIFP 133
P H+ P
Sbjct: 298 PVHLPP 303
Score = 30.8 bits (68), Expect = 1.7
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = -2
Query: 324 LFTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPW 145
++ P + P P H P I ++P H P P+ PP P H P + P
Sbjct: 95 VYEPPYEKPPPVHPPPHEKPPIEYSPPHEKPPVHEPPYEKPPLVHPPP-HDKPPIEYHPP 153
Query: 144 HIFP 133
H P
Sbjct: 154 HEKP 157
Score = 30.8 bits (68), Expect = 1.7
Identities = 14/47 (29%), Positives = 18/47 (38%)
Frame = -2
Query: 321 FTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTP 181
+ P H P + P H P I + P H P P+ PP P
Sbjct: 161 YPPPHEKPPIEYPPPHEKPPIEYPPPHEKPPVYEPPYEKPPPVHPPP 207
Score = 30.4 bits (67), Expect = 2.2
Identities = 17/61 (27%), Positives = 22/61 (36%)
Frame = -2
Query: 315 PRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWHIF 136
P H P + P H + P+ P L P H P P H P + P H+
Sbjct: 270 PSHEKPPFVYPPPHEKSPMHEPPYEKAPPVHLPP-HEKPPIEYAPPHEKPPVEYPPPHVK 328
Query: 135 P 133
P
Sbjct: 329 P 329
Score = 28.9 bits (63), Expect = 6.3
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = -2
Query: 321 FTPRHISPSTSFTPRHISPCISF-TPWHVPPRTSLTPWHVPP 199
+ P H P + P H+ P + + +P PP P PP
Sbjct: 311 YAPPHEKPPVEYPPPHVKPPVEYPSPAEKPPTHEKPPIEFPP 352
Score = 28.5 bits (62), Expect = 8.2
Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 10/73 (13%)
Frame = -2
Query: 321 FTPRHISPSTS----------FTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHV 172
++P H P P H P I + P H P P H P P H
Sbjct: 118 YSPPHEKPPVHEPPYEKPPLVHPPPHDKPPIEYHPPHEKPPIEYPPPHEKPPIEYPPPHE 177
Query: 171 SPCTSFTPWHIFP 133
P + P H P
Sbjct: 178 KPPIEYPPPHEKP 190
>sp|P64544|YPEC_SHIFL Hypothetical protein ypeC precursor
sp|P64543|YPEC_ECO57 Hypothetical protein ypeC precursor
sp|P64542|YPEC_ECOLI Hypothetical protein ypeC precursor
Length = 108
Score = 34.3 bits (77), Expect = 0.15
Identities = 28/102 (27%), Positives = 40/102 (39%), Gaps = 5/102 (4%)
Frame = +1
Query: 40 LFIFGTLIVGFQICINASSSDLINVLEKRPNWKDM--PWGKRGAWRDMP-WGKRSAWRDM 210
LF+ L+ + NA L+ ++ + +D + G WRD W + WR
Sbjct: 5 LFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYWDGGHWRDRDYWHRNYEWRKN 64
Query: 211 PWGKRSAWRDMPWGKRNAWRDMPWGKRSAWRDMP--WGKKRG 330
W + W KR A+ G R WRD GK RG
Sbjct: 65 RWWRHDNGYHRGWDKRKAYER---GYREGWRDRDDHRGKGRG 103
>sp|Q62635|MUC2_RAT Mucin-2 precursor (Intestinal mucin 2)
Length = 1513
Score = 33.5 bits (75), Expect = 0.25
Identities = 24/60 (40%), Positives = 27/60 (45%)
Frame = -2
Query: 330 TSLFTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFT 151
TS T SP+TS +SP S T P TS T P+TS T SP TS T
Sbjct: 1415 TSPLTSSATSPTTSHITSTVSPTTSPTTSTTSPTTSPTTSTTSPTTSTTSPTPSPTTSTT 1474
Score = 31.6 bits (70), Expect = 0.97
Identities = 22/52 (42%), Positives = 25/52 (48%)
Frame = -2
Query: 306 ISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFT 151
+SP+TS T SP S T P TS T P+TS T SP TS T
Sbjct: 1434 VSPTTSPTTSTTSPTTSPTTSTTSPTTSTTSPTPSPTTSTTSPTPSPTTSTT 1485
Score = 31.2 bits (69), Expect = 1.3
Identities = 25/60 (41%), Positives = 27/60 (45%)
Frame = -2
Query: 303 SPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWHIFPIWS 124
SP+TS T SP S T P TS T P+TS T SP TS T PI S
Sbjct: 1446 SPTTSPTTSTTSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTTSPITS 1505
Score = 29.6 bits (65), Expect = 3.7
Identities = 22/51 (43%), Positives = 24/51 (47%)
Frame = -2
Query: 303 SPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFT 151
SP+TS T SP S T P TS T P+TS T SP TS T
Sbjct: 1457 SPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTPSPTTSTTSPTTSPITSPT 1507
Score = 28.9 bits (63), Expect = 6.3
Identities = 25/70 (35%), Positives = 33/70 (47%)
Frame = -2
Query: 360 CNFV*RYILITSLFTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTP 181
C F Y L T +SP+TS TP +P + +P +P + LT P+TS
Sbjct: 1380 CCFPMEYCLST-------VSPTTS-TPISSTPQPTSSPTTLPTTSPLTSSATSPTTSHIT 1431
Query: 180 WHVSPCTSFT 151
VSP TS T
Sbjct: 1432 STVSPTTSPT 1441
>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2
Length = 327
Score = 33.5 bits (75), Expect = 0.25
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Frame = -2
Query: 294 TSFTPRHISPCISFTPWHVPPRTS-------LTPWHVPPSTSLTPWHVSPCTSFTPWHIF 136
TS H SP +SF +PP L PW P +S TP H P +P +
Sbjct: 200 TSTMKLHDSPMLSFNRPPMPPSVGQVANPMPLDPWLTSPISSATPMHTIPGFMSSPQTLQ 259
Query: 135 PIWS 124
P +S
Sbjct: 260 PTYS 263
>sp|P08297|NO75_SOYBN Early nodulin 75 precursor (N-75) (NGM-75)
Length = 309
Score = 32.7 bits (73), Expect = 0.43
Identities = 18/61 (29%), Positives = 20/61 (32%)
Frame = -2
Query: 315 PRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWHIF 136
P H P + P H P + P H P P H P P H P P H
Sbjct: 128 PPHEKPPPEYEPPHEKPPPEYQPPHEKPPPEYQPPHEKPPPEYQPPHEKPPPEHQPPHEK 187
Query: 135 P 133
P
Sbjct: 188 P 188
Score = 30.4 bits (67), Expect = 2.2
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Frame = -2
Query: 315 PRHISPSTSFTPRHISPCISFTPWH-VPPRTSLTPWHVPP---STSLTPWHVSPCTSFTP 148
P H P + P H P + P H PP + P H PP P H P + P
Sbjct: 80 PPHEKPPPEYLPPHEKPPPEYQPPHEKPPHENPPPEHQPPHEKPPEHQPPHEKPPPEYEP 139
Query: 147 WHIFP 133
H P
Sbjct: 140 PHEKP 144
Score = 30.4 bits (67), Expect = 2.2
Identities = 15/52 (28%), Positives = 18/52 (34%)
Frame = -2
Query: 321 FTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSP 166
+ P H P + P H P + P H P P H P P H P
Sbjct: 137 YEPPHEKPPPEYQPPHEKPPPEYQPPHEKPPPEYQPPHEKPPPEHQPPHEKP 188
Score = 30.4 bits (67), Expect = 2.2
Identities = 18/63 (28%), Positives = 22/63 (34%)
Frame = -2
Query: 321 FTPRHISPSTSFTPRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWH 142
+ P H P + P H P + P H P P H P P H P + P H
Sbjct: 148 YQPPHEKPPPEYQPPHEKPPPEYQPPHEKPPPEHQPPHEKPPEHQPP-HEKPPPEYQPPH 206
Query: 141 IFP 133
P
Sbjct: 207 EKP 209
Score = 29.6 bits (65), Expect = 3.7
Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Frame = -2
Query: 315 PRHISPSTSFTPRHISPCISFTPWH-VPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWHI 139
P H P + P H P P H PP P+ PP P+ P + P H
Sbjct: 220 PPHEKPPPEYQPPHEKPPPEHQPPHEKPPPVYPPPYEKPPPVYEPPYEKPPPVVYPPPHE 279
Query: 138 FP 133
P
Sbjct: 280 KP 281
>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1
Length = 334
Score = 32.7 bits (73), Expect = 0.43
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = -2
Query: 276 HISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTSFTPWHIFP 133
H SP +SF P T++ P + S L PW SP TS TP H P
Sbjct: 211 HDSPMLSFN--RPPMHTNVGP--MSNSLPLDPWLTSPLTSTTPVHSIP 254
>sp|O15534|PER1_HUMAN Period circadian protein 1 (Circadian pacemaker protein Rigui)
(hPER)
Length = 1290
Score = 32.0 bits (71), Expect = 0.74
Identities = 17/39 (43%), Positives = 20/39 (51%)
Frame = -2
Query: 282 PRHISPCISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSP 166
PR +PC P VPP T PW PP+T+ P V P
Sbjct: 848 PRAEAPCYVSHPSPVPPST---PWPTPPATTPFPAVVQP 883
>sp|Q64MP7|SYM_BACFR Methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS)
Length = 679
Score = 31.6 bits (70), Expect = 0.97
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +1
Query: 175 MPWGKRSAW-RDMPWGKRSAWRDMPWGKRNAWRDMPWGKRSAWRDMPWG 318
+P K W R + WR +G+ +W DM R+ RD+ WG
Sbjct: 194 LPLDKHETWLRQWILEEHKEWRPNVYGQCKSWLDMGLQPRAVSRDLDWG 242
Score = 31.6 bits (70), Expect = 0.97
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +1
Query: 112 VLEKRPNWKDMPWGKRGAWRDMPWGKRSAWRDMPWG 219
+LE+ W+ +G+ +W DM R+ RD+ WG
Sbjct: 207 ILEEHKEWRPNVYGQCKSWLDMGLQPRAVSRDLDWG 242
Score = 29.3 bits (64), Expect = 4.8
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 115 LEKRPNW-KDMPWGKRGAWRDMPWGKRSAWRDMPWGKRSAWRDMPWG 252
L+K W + + WR +G+ +W DM R+ RD+ WG
Sbjct: 196 LDKHETWLRQWILEEHKEWRPNVYGQCKSWLDMGLQPRAVSRDLDWG 242
>sp|P0A119|PRIM_PSEPU DNA primase
sp|P0A118|PRIM_PSEPK DNA primase
Length = 660
Score = 31.2 bits (69), Expect = 1.3
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +1
Query: 127 PNWKDMPWGKRGAWRDMPWGKRSAWRDMPWGKRSAWRDMPWGKRNAWRDMPWGKR 291
P++ DMP P + AW+ G + W D PW K N PW +R
Sbjct: 459 PDYGDMPQHDYA-----PVHQEQAWKPNKGGSKKPWSDKPWDK-NRKGGKPWQQR 507
Score = 28.9 bits (63), Expect = 6.3
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = +1
Query: 244 PWGKRNAWRDMPWGKRSAWRDMPWGKKR 327
P + AW+ G + W D PW K R
Sbjct: 471 PVHQEQAWKPNKGGSKKPWSDKPWDKNR 498
>sp|Q20765|NHR7_CAEEL Nuclear hormone receptor family member nhr-7
Length = 536
Score = 30.8 bits (68), Expect = 1.7
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -2
Query: 315 PRHISPSTSFTPRHISPC-ISFTPWHVPPRTSLTPWHVPPSTSLTPWHVSPCTS 157
P P F+P +SPC IS P PP+ T + PSTS P + SP S
Sbjct: 412 PSDTVPLFHFSPPSLSPCQISAPP---PPQQQYTDYSQMPSTSSYPANSSPFQS 462
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,889,675
Number of Sequences: 369166
Number of extensions: 1372307
Number of successful extensions: 4401
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4316
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2783017720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)