Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01290
(382 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62830|RL23_MOUSE 60S ribosomal protein L23 >gi|51338617... 78 5e-15
sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23 78 5e-15
sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23 78 5e-15
sp|P48158|RL23_CAEEL 60S ribosomal protein L23 77 2e-14
sp|O42867|RL23_SCHPO 60S ribosomal protein L23 75 5e-14
sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23 74 8e-14
sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A) 74 1e-13
sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A) 74 1e-13
sp|Q07760|RL23_TOBAC 60S ribosomal protein L23 73 2e-13
sp|P49690|RL23_ARATH 60S ribosomal protein L23 72 4e-13
>sp|P62830|RL23_MOUSE 60S ribosomal protein L23
sp|P62832|RL23_RAT 60S ribosomal protein L23
sp|Q90YU5|RL23_ICTPU 60S ribosomal protein L23
sp|P62829|RL23_HUMAN 60S ribosomal protein L23 (Ribosomal protein L17)
sp|P62831|RL23_PIG 60S ribosomal protein L23 (Ribosomal protein L17)
Length = 140
Score = 78.2 bits (191), Expect = 5e-15
Identities = 51/124 (41%), Positives = 66/124 (53%)
Frame = +3
Query: 3 RFRISLGLPVAAVINCADNSGAKNMYIISVFGTKS*LNIXXXXXXXXXXXXKNVIYKYEI 182
+FRISLGLPV AVINCADN+GAKN+YIISV G K LN K E+
Sbjct: 13 KFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPEL 72
Query: 183 NIEH**KRCYSTKGGPGRKDGTVIQFEDDAGGLRFTKGGMERPGSTAP*SPGSAYPWPQM 362
+ + RKDG + FED+AG + KG M+ T P + A WP++
Sbjct: 73 RKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 132
Query: 363 SSDA 374
+S+A
Sbjct: 133 ASNA 136
>sp|Q6PC14|RL23_BRARE 60S ribosomal protein L23
Length = 140
Score = 78.2 bits (191), Expect = 5e-15
Identities = 51/124 (41%), Positives = 66/124 (53%)
Frame = +3
Query: 3 RFRISLGLPVAAVINCADNSGAKNMYIISVFGTKS*LNIXXXXXXXXXXXXKNVIYKYEI 182
+FRISLGLPV AVINCADN+GAKN+YIISV G K LN K E+
Sbjct: 13 KFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPSAGVGDMVMATVKKGKPEL 72
Query: 183 NIEH**KRCYSTKGGPGRKDGTVIQFEDDAGGLRFTKGGMERPGSTAP*SPGSAYPWPQM 362
+ + RKDG + FED+AG + KG M+ T P + A WP++
Sbjct: 73 RKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 132
Query: 363 SSDA 374
+S+A
Sbjct: 133 ASNA 136
>sp|Q5REU2|RL23_PONPY 60S ribosomal protein L23
Length = 140
Score = 78.2 bits (191), Expect = 5e-15
Identities = 51/124 (41%), Positives = 66/124 (53%)
Frame = +3
Query: 3 RFRISLGLPVAAVINCADNSGAKNMYIISVFGTKS*LNIXXXXXXXXXXXXKNVIYKYEI 182
+FRISLGLPV AVINCADN+GAKN+YIISV G K LN K E+
Sbjct: 13 KFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGQLNRLPAAGVGDMVMATVKKGKPEL 72
Query: 183 NIEH**KRCYSTKGGPGRKDGTVIQFEDDAGGLRFTKGGMERPGSTAP*SPGSAYPWPQM 362
+ + RKDG + FED+AG + KG M+ T P + A WP++
Sbjct: 73 RKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 132
Query: 363 SSDA 374
+S+A
Sbjct: 133 ASNA 136
>sp|P48158|RL23_CAEEL 60S ribosomal protein L23
Length = 140
Score = 76.6 bits (187), Expect = 2e-14
Identities = 48/124 (38%), Positives = 68/124 (54%)
Frame = +3
Query: 3 RFRISLGLPVAAVINCADNSGAKNMYIISVFGTKS*LNIXXXXXXXXXXXXKNVIYKYEI 182
+FRISLGLPV AV+NCADN+GAKN+++ISV+G + LN K E+
Sbjct: 13 KFRISLGLPVGAVMNCADNTGAKNLFVISVYGIRGRLNRLPSAGVGDMFVCSVKKGKPEL 72
Query: 183 NIEH**KRCYSTKGGPGRKDGTVIQFEDDAGGLRFTKGGMERPGSTAP*SPGSAYPWPQM 362
+ + RKDGT I FED+AG + KG M+ T P + A WP++
Sbjct: 73 RKKVLQGVVIRQRKQFRRKDGTFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 132
Query: 363 SSDA 374
+++A
Sbjct: 133 AANA 136
>sp|O42867|RL23_SCHPO 60S ribosomal protein L23
Length = 139
Score = 75.1 bits (183), Expect = 5e-14
Identities = 46/124 (37%), Positives = 68/124 (54%)
Frame = +3
Query: 3 RFRISLGLPVAAVINCADNSGAKNMYIISVFGTKS*LNIXXXXXXXXXXXXKNVIYKYEI 182
++R++LGLPV A++NCADNSGAKN+YI+SVFGT + LN K ++
Sbjct: 12 KYRMTLGLPVQAIMNCADNSGAKNLYIVSVFGTGARLNRLPAASCGDMVLATVKKGKPDL 71
Query: 183 NIEH**KRCYSTKGGPGRKDGTVIQFEDDAGGLRFTKGGMERPGSTAP*SPGSAYPWPQM 362
+ + RKDG + FED+AG + KG M+ T P + A WP++
Sbjct: 72 RKKIMPAIVVRQRKAWRRKDGVYLYFEDNAGVIVNPKGEMKGSAITGPVAKECADLWPRI 131
Query: 363 SSDA 374
+S+A
Sbjct: 132 ASNA 135
>sp|Q9XSU3|RL23_CANFA 60S ribosomal protein L23
Length = 140
Score = 74.3 bits (181), Expect = 8e-14
Identities = 50/124 (40%), Positives = 63/124 (50%)
Frame = +3
Query: 3 RFRISLGLPVAAVINCADNSGAKNMYIISVFGTKS*LNIXXXXXXXXXXXXKNVIYKYEI 182
+FRISLGLPV AVINCADN+GAKN+YIISV G K LN K +
Sbjct: 13 KFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPXL 72
Query: 183 NIEH**KRCYSTKGGPGRKDGTVIQFEDDAGGLRFTKGGMERPGSTAP*SPGSAYPWPQM 362
+ + RKDG + FED+AG + KG M+ T P A WP +
Sbjct: 73 RKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVXKECADLWPXI 132
Query: 363 SSDA 374
+S+A
Sbjct: 133 ASNA 136
>sp|P48159|RL23_DROME 60S ribosomal protein L23 (L17A)
Length = 140
Score = 73.9 bits (180), Expect = 1e-13
Identities = 47/125 (37%), Positives = 67/125 (53%)
Frame = +3
Query: 3 RFRISLGLPVAAVINCADNSGAKNMYIISVFGTKS*LNIXXXXXXXXXXXXKNVIYKYEI 182
+FRISLGLPV AV+NCADN+GAKN+Y+I+V G + LN K E+
Sbjct: 13 KFRISLGLPVGAVMNCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPEL 72
Query: 183 NIEH**KRCYSTKGGPGRKDGTVIQFEDDAGGLRFTKGGMERPGSTAP*SPGSAYPWPQM 362
+ + R+DG I FED+AG + KG M+ T P + A WP++
Sbjct: 73 RKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 132
Query: 363 SSDAT 377
+S+A+
Sbjct: 133 ASNAS 137
>sp|Q9GNE2|RL23_AEDAE 60S ribosomal protein L23 (L17A)
Length = 140
Score = 73.9 bits (180), Expect = 1e-13
Identities = 47/124 (37%), Positives = 66/124 (53%)
Frame = +3
Query: 3 RFRISLGLPVAAVINCADNSGAKNMYIISVFGTKS*LNIXXXXXXXXXXXXKNVIYKYEI 182
+FRISLGLPV AVINCADN+GAKN+Y+I+V G + LN K E+
Sbjct: 13 KFRISLGLPVGAVINCADNTGAKNLYVIAVHGIRGRLNRLPAAGVGDMFVATVKKGKPEL 72
Query: 183 NIEH**KRCYSTKGGPGRKDGTVIQFEDDAGGLRFTKGGMERPGSTAP*SPGSAYPWPQM 362
+ + R+DG + FED+AG + KG M+ T P + A WP++
Sbjct: 73 RKKVMPAVVIRQRKPFRRRDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRI 132
Query: 363 SSDA 374
+S+A
Sbjct: 133 ASNA 136
>sp|Q07760|RL23_TOBAC 60S ribosomal protein L23
Length = 140
Score = 72.8 bits (177), Expect = 2e-13
Identities = 49/124 (39%), Positives = 64/124 (51%)
Frame = +3
Query: 3 RFRISLGLPVAAVINCADNSGAKNMYIISVFGTKS*LNIXXXXXXXXXXXXKNVIYKYEI 182
+FR+SLGLPVAA INCADN+GAKN+YIISV G K LN K ++
Sbjct: 13 KFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL 72
Query: 183 NIEH**KRCYSTKGGPGRKDGTVIQFEDDAGGLRFTKGGMERPGSTAP*SPGSAYPWPQM 362
+ + RKDG + FED+AG + KG M+ T P A WP++
Sbjct: 73 RKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPRI 132
Query: 363 SSDA 374
+S A
Sbjct: 133 ASAA 136
>sp|P49690|RL23_ARATH 60S ribosomal protein L23
Length = 140
Score = 72.0 bits (175), Expect = 4e-13
Identities = 48/124 (38%), Positives = 64/124 (51%)
Frame = +3
Query: 3 RFRISLGLPVAAVINCADNSGAKNMYIISVFGTKS*LNIXXXXXXXXXXXXKNVIYKYEI 182
+FR+SLGLPVAA +NCADN+GAKN+YIISV G K LN K ++
Sbjct: 13 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL 72
Query: 183 NIEH**KRCYSTKGGPGRKDGTVIQFEDDAGGLRFTKGGMERPGSTAP*SPGSAYPWPQM 362
+ + RKDG + FED+AG + KG M+ T P A WP++
Sbjct: 73 RKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRI 132
Query: 363 SSDA 374
+S A
Sbjct: 133 ASAA 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,387,968
Number of Sequences: 369166
Number of extensions: 928365
Number of successful extensions: 2095
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2093
length of database: 68,354,980
effective HSP length: 93
effective length of database: 51,174,625
effective search space used: 1688762625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)