Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01271
(206 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O35857|TIM44_MOUSE Import inner membrane translocase sub... 42 4e-04
sp|O35094|TIM44_RAT Import inner membrane translocase subun... 42 4e-04
sp|O43615|TIM44_HUMAN Import inner membrane translocase sub... 42 6e-04
sp|O02161|TIM44_CAEEL Probable import inner membrane transl... 36 0.024
sp|O67708|UVRB_AQUAE UvrABC system protein B (UvrB protein)... 32 0.59
sp|P12882|MYH1_HUMAN Myosin-1 (Myosin heavy chain, skeletal... 31 0.78
sp|Q9Y623|MYH4_HUMAN Myosin-4 (Myosin heavy chain, skeletal... 31 0.78
sp|P91927|A60DA_DROME Calcium-binding mitochondrial protein... 30 1.3
sp|O33600|RAD50_SULAC DNA double-strand break repair rad50 ... 30 2.3
sp|O67055|PPNK_AQUAE Probable inorganic polyphosphate/ATP-N... 30 2.3
>sp|O35857|TIM44_MOUSE Import inner membrane translocase subunit TIM44, mitochondrial
precursor
Length = 452
Score = 42.0 bits (97), Expect = 4e-04
Identities = 16/52 (30%), Positives = 35/52 (67%)
Frame = +3
Query: 51 SGPKKNFFGNIFDNLKKGIETDKDILENIEKFKKSKQELEDTEEFRKIRQIY 206
SG +K F + DN+K+ + +K++ E+I+KF+ ++LE+++ ++ R+ Y
Sbjct: 53 SGSRKGFLSGLLDNIKQELAKNKEMKESIKKFRDEAKKLEESDALQEARRKY 104
>sp|O35094|TIM44_RAT Import inner membrane translocase subunit TIM44, mitochondrial
precursor
Length = 453
Score = 42.0 bits (97), Expect = 4e-04
Identities = 16/52 (30%), Positives = 35/52 (67%)
Frame = +3
Query: 51 SGPKKNFFGNIFDNLKKGIETDKDILENIEKFKKSKQELEDTEEFRKIRQIY 206
SG +K F + DN+K+ + +K++ E+I+KF+ ++LE+++ ++ R+ Y
Sbjct: 54 SGSRKGFLSGLLDNIKQELAQNKEMKESIKKFRDEAKKLEESDALQEARRKY 105
>sp|O43615|TIM44_HUMAN Import inner membrane translocase subunit TIM44, mitochondrial
precursor
Length = 452
Score = 41.6 bits (96), Expect = 6e-04
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Frame = +3
Query: 30 LPQCRLYS-GPKKNFFGNIFDNLKKGIETDKDILENIEKFKKSKQELEDTEEFRKIRQIY 206
LP + YS G +K F + DN+K+ + +K++ E+I+KF+ + LE+++ ++ R+ Y
Sbjct: 45 LPLSKSYSSGNRKGFLSGLLDNVKQELAKNKEMKESIKKFRDEARRLEESDVLQEARRKY 104
>sp|O02161|TIM44_CAEEL Probable import inner membrane translocase subunit TIM44,
mitochondrial precursor
Length = 425
Score = 36.2 bits (82), Expect = 0.024
Identities = 13/48 (27%), Positives = 30/48 (62%)
Frame = +3
Query: 57 PKKNFFGNIFDNLKKGIETDKDILENIEKFKKSKQELEDTEEFRKIRQ 200
PK+ F N+ DN++ ++ +K++ E+ ++ K QEL +++ + R+
Sbjct: 34 PKRGFLNNLIDNVRDEMQKNKELQEHQQQLKARMQELNESDALKDARK 81
>sp|O67708|UVRB_AQUAE UvrABC system protein B (UvrB protein) (Excinuclease ABC subunit B)
Length = 663
Score = 31.6 bits (70), Expect = 0.59
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 87 DNLKKGIETDKDILENIEKFKKSKQELEDTEEFRKIRQI 203
+ L KG+++++DIL+ IEK +K + EF K ++
Sbjct: 611 EELPKGVKSEEDILKKIEKLEKEMWKYAQNWEFEKAAKV 649
>sp|P12882|MYH1_HUMAN Myosin-1 (Myosin heavy chain, skeletal muscle, adult 1) (Myosin
heavy chain IIx/d) (MyHC-IIx/d)
Length = 1939
Score = 31.2 bits (69), Expect = 0.78
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 93 LKKGIETDKDILENIEKFKKSKQELEDTEEFRK 191
L K ET+K++ E+F+K+K+EL TE RK
Sbjct: 843 LLKSAETEKEMANMKEEFEKTKEELAKTEAKRK 875
>sp|Q9Y623|MYH4_HUMAN Myosin-4 (Myosin heavy chain, skeletal muscle, fetal) (Myosin heavy
chain IIb) (MyHC-IIb)
Length = 1939
Score = 31.2 bits (69), Expect = 0.78
Identities = 15/33 (45%), Positives = 22/33 (66%)
Frame = +3
Query: 93 LKKGIETDKDILENIEKFKKSKQELEDTEEFRK 191
L K ET+K++ E+F+K+K+EL TE RK
Sbjct: 843 LLKSAETEKEMANMKEEFEKTKEELAKTEAKRK 875
>sp|P91927|A60DA_DROME Calcium-binding mitochondrial protein Anon-60Da
Length = 1013
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Frame = +3
Query: 99 KGIETDKDILENIEKFKKSKQEL----EDTEEFRKIRQI 203
K + +DK ++ E K+ K+EL ED EE R++RQ+
Sbjct: 570 KTLSSDKQLVVEKETIKELKEELADYKEDVEELREVRQV 608
>sp|O33600|RAD50_SULAC DNA double-strand break repair rad50 ATPase
Length = 886
Score = 29.6 bits (65), Expect = 2.3
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 87 DNLKKGIETDKDILENIEKFKKSKQE--LEDTEEFRKIRQI 203
D LKK IE K LENIE+ K K++ + EF +I++I
Sbjct: 199 DRLKKEIEEIKVKLENIEREAKEKEDELNQYNTEFNRIKEI 239
>sp|O67055|PPNK_AQUAE Probable inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD
kinase)
Length = 274
Score = 29.6 bits (65), Expect = 2.3
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +3
Query: 39 CRLYSGPKKNFFGNIFDNLKKG 104
CR+YS P+K+FFG + + L+ G
Sbjct: 253 CRMYSHPRKSFFGILKEKLRWG 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,388,219
Number of Sequences: 369166
Number of extensions: 215160
Number of successful extensions: 1457
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 68,354,980
effective HSP length: 40
effective length of database: 60,965,580
effective search space used: 1707036240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)