Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01268
(517 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38170|CND2_YEAST Condensin complex subunit 2 (Barren ho... 58 2e-08
sp|Q15003|CND2_HUMAN Condensin subunit 2 (Barren homolog pr... 51 2e-06
sp|Q8C156|CND2_MOUSE Condensin complex subunit 2 (Barren ho... 46 6e-05
sp|O13067|CND2_XENLA Condensin complex subunit 2 (Chromosom... 43 5e-04
sp|Q9Y7R3|CND2_SCHPO Condensin complex subunit 2 (p105) (Ba... 39 0.007
sp|Q23256|YH92_CAEEL Hypothetical WD-repeat protein ZC302.2... 29 7.6
sp|Q9JFC1|VG09_VACCT Protein G9 28 9.9
sp|P07611|VG09_VACCV Protein G9 (Protein F1) >gi|137910|sp|... 28 9.9
>sp|P38170|CND2_YEAST Condensin complex subunit 2 (Barren homolog) (CAPH homolog)
Length = 728
Score = 57.8 bits (138), Expect = 2e-08
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Frame = +2
Query: 5 MWSILQNLIGAVDVKTVHEMKYPNLH-----KSTKTCLFSQLLVSLNAQLSFEQSKDLSV 169
+W + NLI D + E + +STK FS ++ ++ S + KD+S
Sbjct: 628 VWRSINNLIQEHDSRKNREQSSNDSETHTEDESTKELKFSDIIQGISKMYSDDTLKDIST 687
Query: 170 PILLTCLLHLANETGLDIGNTEDYNDLVI 256
CLLHLANE GL I +TE+YNDL++
Sbjct: 688 SFCFICLLHLANEHGLQITHTENYNDLIV 716
>sp|Q15003|CND2_HUMAN Condensin subunit 2 (Barren homolog protein 1)
(Chromosome-associated protein H) (hCAP-H) (XCAP-H
homolog)
Length = 741
Score = 50.8 bits (120), Expect = 2e-06
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Frame = +2
Query: 5 MWSILQNLIGA-VDVKTVHEM--KYPNLHKSTKTCLFSQLLVSLNAQLSFEQSKDLSVPI 175
MWS+L L G D + H K L + + S L L L +++LS+P+
Sbjct: 651 MWSLLTALSGKEADAEANHREAGKEAALAEVADEKMLSGLTKDLQRSLPPVMAQNLSIPL 710
Query: 176 LLTCLLHLANETGLDIGNTEDYNDLVIGQG 265
CLLHLANE L + TED +D+++ QG
Sbjct: 711 AFACLLHLANEKNLKLEGTEDLSDVLVRQG 740
>sp|Q8C156|CND2_MOUSE Condensin complex subunit 2 (Barren homolog protein 1)
(Chromosome-associated protein H) (mCAP-H) (XCAP-H
homolog)
Length = 731
Score = 45.8 bits (107), Expect = 6e-05
Identities = 22/53 (41%), Positives = 33/53 (62%)
Frame = +2
Query: 107 SQLLVSLNAQLSFEQSKDLSVPILLTCLLHLANETGLDIGNTEDYNDLVIGQG 265
S L L +L +++LS+P+ CLLHLANE L + TED +D+++ QG
Sbjct: 678 SGLTKDLQTRLPPLMAQNLSIPLAFACLLHLANEKNLKLEGTEDLSDVLVMQG 730
>sp|O13067|CND2_XENLA Condensin complex subunit 2 (Chromosome-associated protein H)
(Chromosome assembly protein xCAP-H) (Barren homolog)
Length = 699
Score = 42.7 bits (99), Expect = 5e-04
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = +2
Query: 101 LFSQLLVSLNAQLSFEQSKDLSVPILLTCLLHLANETGLDIGNTEDYNDLVIGQ 262
+FS + L +L +++LSVP+ CLLHLANE L + +D +D++I Q
Sbjct: 644 VFSSVTHGLQKRLPPVMAQNLSVPLAFACLLHLANEKNLKLQGMDDLSDVMIMQ 697
>sp|Q9Y7R3|CND2_SCHPO Condensin complex subunit 2 (p105) (Barren homolog) (CAPH homolog)
Length = 742
Score = 38.9 bits (89), Expect = 0.007
Identities = 16/40 (40%), Positives = 26/40 (65%)
Frame = +2
Query: 146 EQSKDLSVPILLTCLLHLANETGLDIGNTEDYNDLVIGQG 265
++ KD+S C+LHLANE L++ + ED++D+ I G
Sbjct: 690 KELKDISTSFAFICVLHLANEHNLELTSNEDFSDVFIRPG 729
>sp|Q23256|YH92_CAEEL Hypothetical WD-repeat protein ZC302.2 in chromosome V
Length = 501
Score = 28.9 bits (63), Expect = 7.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 41 DVKTVHEMKYPNLHKSTKTCLFSQLLVSLNAQL 139
D K +KY N HK+ K CLF+ + V L +
Sbjct: 410 DPKKAKPLKYYNGHKNKKYCLFANMSVPLGKHI 442
>sp|Q9JFC1|VG09_VACCT Protein G9
Length = 340
Score = 28.5 bits (62), Expect = 9.9
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 41 DVKTVHEMKYPNLHKSTKTCLFSQLLVSLNAQLSFEQSKDLSVPILLTCLLHLANETGLD 220
D H+ ++S +T Q L++L ++ SKD SVPI + L HL
Sbjct: 141 DRNICHQWIGSAFNRSNRTVEGQQSLINLYNKMQTLCSKDASVPICESFLHHLRAH---- 196
Query: 221 IGNTEDYNDLV 253
NTED +++
Sbjct: 197 --NTEDSKEMI 205
>sp|P07611|VG09_VACCV Protein G9 (Protein F1)
sp|P21030|VG09_VACCC Protein G9
Length = 340
Score = 28.5 bits (62), Expect = 9.9
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 41 DVKTVHEMKYPNLHKSTKTCLFSQLLVSLNAQLSFEQSKDLSVPILLTCLLHLANETGLD 220
D H+ ++S +T Q L++L ++ SKD SVPI + L HL
Sbjct: 141 DRNICHQWIGSAFNRSNRTVEGQQSLINLYNKMQTLCSKDASVPICESFLHHLRAH---- 196
Query: 221 IGNTEDYNDLV 253
NTED +++
Sbjct: 197 --NTEDSKEMI 205
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,693,416
Number of Sequences: 369166
Number of extensions: 863045
Number of successful extensions: 1626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1626
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)