Planaria EST Database


DrC_01264

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01264
         (792 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P28659|CUGB1_MOUSE  CUG triplet repeat RNA-binding protei...    77   7e-14
sp|Q92879|CUGB1_HUMAN  CUG triplet repeat RNA-binding protei...    76   9e-14
sp|O04425|FCA_ARATH  Flowering time control protein FCA            65   2e-10
sp|Q86U06|RBM23_HUMAN  Probable RNA-binding protein 23 (RNA-...    60   9e-09
sp|Q8VH51|RNPC2_MOUSE  RNA-binding region containing protein...    58   3e-08
sp|Q14498|RNPC2_HUMAN  RNA-binding region containing protein...    55   2e-07
sp|P42731|PABP2_ARATH  Polyadenylate-binding protein 2 (Poly...    53   1e-06
sp|P21187|PABP_DROME  Polyadenylate-binding protein (Poly(A)...    50   5e-06
sp|P98179|RBM3_HUMAN  Putative RNA-binding protein 3 (RNA-bi...    49   1e-05
sp|O93235|CIRBP_XENLA  Cold-inducible RNA-binding protein (G...    49   1e-05
>sp|P28659|CUGB1_MOUSE CUG triplet repeat RNA-binding protein 1 (CUG-BP1) (RNA-binding
           protein BRUNOL-2) (Deadenylation factor CUG-BP)
           (Deadenylation factor EDEN-BP) (Brain protein F41)
          Length = 486

 Score = 76.6 bits (187), Expect = 7e-14
 Identities = 39/102 (38%), Positives = 62/102 (60%)
 Frame = +2

Query: 173 NQDENAKLFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKDAYGQSRGCAFVTFNSSDEAN 352
           N  E+ KLFIGM++K  +E+D+R +   +G I+ C IL+   G SRGCAFVTF +   A 
Sbjct: 103 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRTMAQ 162

Query: 353 VAIEALNGMKTSMACPELGSTIVARLADNDHERQLRKMQMQI 478
            AI+A++  +T   C    S +V + AD   +++ ++M  Q+
Sbjct: 163 TAIKAMHQAQTMEGC---SSPMVVKFADTQKDKEQKRMAQQL 201

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
 Frame = +2

Query: 191 KLFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKDAY---GQSRGCAFVTFNSSDEANVAI 361
           K+F+G + +  SE D+R+L E YG +    IL+D      QS+GC FVTF +      A+
Sbjct: 17  KMFVGQVPRTWSEKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYT---RKAAL 73

Query: 362 EALNGMKTSMACPELGSTIVARLADNDHERQLRKMQMQIPAVQFLTPQN 508
           EA N +      P +   I  + AD++    +   ++ I  +     +N
Sbjct: 74  EAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTEN 122

 Score = 36.2 bits (82), Expect = 0.10
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +2

Query: 182 ENAKLFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKDAYGQSRGC-AFVTFNSSDEANVA 358
           E A LFI  L +   + D+ Q+  P+G + +  +  D       C  FV++++   A  A
Sbjct: 399 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 458

Query: 359 IEALNGMKTSM 391
           I+++NG +  M
Sbjct: 459 IQSMNGFQIGM 469
>sp|Q92879|CUGB1_HUMAN CUG triplet repeat RNA-binding protein 1 (CUG-BP1) (RNA-binding
           protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa
           Nuclear polyadenylated RNA-binding protein) (EDEN-BP)
          Length = 486

 Score = 76.3 bits (186), Expect = 9e-14
 Identities = 39/102 (38%), Positives = 62/102 (60%)
 Frame = +2

Query: 173 NQDENAKLFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKDAYGQSRGCAFVTFNSSDEAN 352
           N  E+ KLFIGM++K  +E+D+R +   +G I+ C IL+   G SRGCAFVTF +   A 
Sbjct: 103 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQ 162

Query: 353 VAIEALNGMKTSMACPELGSTIVARLADNDHERQLRKMQMQI 478
            AI+A++  +T   C    S +V + AD   +++ ++M  Q+
Sbjct: 163 TAIKAMHQAQTMEGC---SSPMVVKFADTQKDKEQKRMAQQL 201

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
 Frame = +2

Query: 191 KLFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKDAY---GQSRGCAFVTFNSSDEANVAI 361
           K+F+G + +  SE D+R+L E YG +    +L+D      QS+GC FVTF +      A+
Sbjct: 17  KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYT---RKAAL 73

Query: 362 EALNGMKTSMACPELGSTIVARLADNDHERQLRKMQMQIPAVQFLTPQN 508
           EA N +      P +   I  + AD++    +   ++ I  +     +N
Sbjct: 74  EAQNALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTEN 122

 Score = 36.2 bits (82), Expect = 0.10
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +2

Query: 182 ENAKLFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKDAYGQSRGC-AFVTFNSSDEANVA 358
           E A LFI  L +   + D+ Q+  P+G + +  +  D       C  FV++++   A  A
Sbjct: 399 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAA 458

Query: 359 IEALNGMKTSM 391
           I+++NG +  M
Sbjct: 459 IQSMNGFQIGM 469
>sp|O04425|FCA_ARATH Flowering time control protein FCA
          Length = 747

 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 32/97 (32%), Positives = 53/97 (54%)
 Frame = +2

Query: 191 KLFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKDAYGQSRGCAFVTFNSSDEANVAIEAL 370
           KLF+G LNK  +E +V ++   +G +++  +++D Y QSRGC FV ++S + A  AI+ L
Sbjct: 212 KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYRQSRGCGFVKYSSKETAMAAIDGL 271

Query: 371 NGMKTSMACPELGSTIVARLADNDHERQLRKMQMQIP 481
           NG  T   C      ++ R A+    +     +M  P
Sbjct: 272 NGTYTMRGC---NQPLIVRFAEPKRPKPGESREMAPP 305

 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
 Frame = +2

Query: 167 IQNQDENAKLFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKD-AYGQSRGCAFVTFNSSD 343
           + ++    KLF+G + +  +E+++R   E +G +    ++KD   GQ +GC FV + +S 
Sbjct: 113 VSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSK 172

Query: 344 EANVAIEALNGMKTSMACPELGSTIVARLADNDHER 451
           +A+ AI AL+   T    P     +  R AD + ER
Sbjct: 173 DADRAIRALHNQIT---LPGGTGPVQVRYADGERER 205
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 (RNA-binding motif protein 23)
           (RNA-binding region containing protein 4) (Splicing
           factor SF2)
          Length = 439

 Score = 59.7 bits (143), Expect = 9e-09
 Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
 Frame = +2

Query: 59  VRL*IKTTQKMQVASPISVDSMALYSNGYIDKGNMLIQNQDENAKLFIGMLNKNQSEDDV 238
           V L I  T +  +  PI V +     N      N L +      +L++G L+ N +ED +
Sbjct: 220 VPLAIGLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDML 279

Query: 239 RQLCEPYGCIKNCMILKDA-YGQSRGCAFVTFNSSDEANVAIEALNGMK 382
           R + EP+G I N +++KD+  G+S+G  F+TF+ S+ A  A+E LNG +
Sbjct: 280 RGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFE 328
>sp|Q8VH51|RNPC2_MOUSE RNA-binding region containing protein 2 (Coactivator of activating
           protein 1 and estrogen receptors) (Coactivator of AP-1
           and ERs) (Transcription coactivator CAPER)
          Length = 530

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 36/109 (33%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
 Frame = +2

Query: 59  VRL*IKTTQKMQVASPISVDSMALYSNGYIDKGNMLIQNQDENAKLFIGMLNKNQSEDDV 238
           VRL I  T +  +  PI V +     N      N L +      +L++G L+ N +ED +
Sbjct: 207 VRLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDML 266

Query: 239 RQLCEPYGCIKNCMILKDA-YGQSRGCAFVTFNSSDEANVAIEALNGMK 382
           R + EP+G I++  ++ D+  G+S+G  F+TF+ S+ A  A+E LNG +
Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
>sp|Q14498|RNPC2_HUMAN RNA-binding region containing protein 2 (Hepatocellular carcinoma
           protein 1) (Splicing factor HCC1)
          Length = 530

 Score = 55.5 bits (132), Expect = 2e-07
 Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
 Frame = +2

Query: 59  VRL*IKTTQKMQVASPISVDSMALYSNGYIDKGNMLIQNQDENAKLFIGMLNKNQSEDDV 238
           V L I  T +  +  PI V +     N      N L +      +L++G L+ N +ED +
Sbjct: 207 VPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPMRLYVGSLHFNITEDML 266

Query: 239 RQLCEPYGCIKNCMILKDA-YGQSRGCAFVTFNSSDEANVAIEALNGMK 382
           R + EP+G I++  ++ D+  G+S+G  F+TF+ S+ A  A+E LNG +
Sbjct: 267 RGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFE 315
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP
           2)
          Length = 629

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 23/70 (32%), Positives = 45/70 (64%)
 Frame = +2

Query: 173 NQDENAKLFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKDAYGQSRGCAFVTFNSSDEAN 352
           N+ +   +++  L ++ ++DD++     YG I + +++KD  G+S+G  FV F ++D+A 
Sbjct: 210 NKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAA 269

Query: 353 VAIEALNGMK 382
            A+E+LNG K
Sbjct: 270 RAVESLNGHK 279

 Score = 44.7 bits (104), Expect = 3e-04
 Identities = 17/65 (26%), Positives = 41/65 (63%)
 Frame = +2

Query: 182 ENAKLFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKDAYGQSRGCAFVTFNSSDEANVAI 361
           +++ L++  L+ + S++ ++++  P+G + +  +++D  G S+G  FV F + +EA  A+
Sbjct: 316 QSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAM 375

Query: 362 EALNG 376
             L+G
Sbjct: 376 SQLSG 380

 Score = 42.0 bits (97), Expect = 0.002
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +2

Query: 194 LFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKDAYGQSRGCAFVTFNSSDEANVAIEALN 373
           +FI  L+++     +      +G I +C +  D+ GQS+G  FV + + + A  AIE LN
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185

Query: 374 GM 379
           GM
Sbjct: 186 GM 187
>sp|P21187|PABP_DROME Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
          Length = 634

 Score = 50.4 bits (119), Expect = 5e-06
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
 Frame = +2

Query: 182 ENAKLFIGMLNKNQSED----DVRQLCEPYGCIKNCMILKDAYGQSRGCAFVTFNSSDEA 349
           E AKLF  +  KN +ED     +++  EPYG I +  ++    G+S+G  FV F +++ A
Sbjct: 177 EKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFGFVAFETTEAA 236

Query: 350 NVAIEALNG 376
             A++ALNG
Sbjct: 237 EAAVQALNG 245

 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 22/61 (36%), Positives = 35/61 (57%)
 Frame = +2

Query: 194 LFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKDAYGQSRGCAFVTFNSSDEANVAIEALN 373
           L++  L+    +D +R    PYG I +  ++ D  G+S+G  FV FN++ EA  A+  LN
Sbjct: 289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELN 348

Query: 374 G 376
           G
Sbjct: 349 G 349

 Score = 39.3 bits (90), Expect = 0.012
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = +2

Query: 194 LFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKDAYGQSRGCAFVTFNSSDEANVAIEALN 373
           +FI  L++      +      +G I +C +  D  G S+G  FV F + + AN +I+ +N
Sbjct: 92  VFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVN 151

Query: 374 GM 379
           GM
Sbjct: 152 GM 153
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 (RNA-binding motif protein 3) (RNPL)
          Length = 157

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
 Frame = +2

Query: 182 ENAKLFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKDAYGQ-SRGCAFVTFNSSDEANVA 358
           E  KLF+G LN N  E  +      +G I   +++KD   Q SRG  F+TF + + A+VA
Sbjct: 4   EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63

Query: 359 IEALNG 376
           + A+NG
Sbjct: 64  MRAMNG 69
>sp|O93235|CIRBP_XENLA Cold-inducible RNA-binding protein (Glycine-rich RNA-binding
           protein CIRP) (xCIRP)
          Length = 163

 Score = 49.3 bits (116), Expect = 1e-05
 Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = +2

Query: 182 ENAKLFIGMLNKNQSEDDVRQLCEPYGCIKNCMILKD-AYGQSRGCAFVTFNSSDEANVA 358
           +  KLFIG LN   +ED + Q    YG I   +++KD    +SRG  FVTF + D+A  A
Sbjct: 3   DEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDA 62

Query: 359 IEALNG 376
           + A+NG
Sbjct: 63  MMAMNG 68
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,243,713
Number of Sequences: 369166
Number of extensions: 1703571
Number of successful extensions: 4363
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4282
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)