Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01253
(768 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8ZGV8|BETI_YERPE HTH-type transcriptional regulator betI 31 3.2
sp|P39427|Y01H_BPT4 Hypothetical 8.1 kDa protein in modB-mr... 31 4.2
sp|Q4J939|PGK_SULAC Phosphoglycerate kinase 30 9.4
>sp|Q8ZGV8|BETI_YERPE HTH-type transcriptional regulator betI
Length = 198
Score = 31.2 bits (69), Expect = 3.2
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +3
Query: 249 NRVGDRRITVSQIAESLGISNGSVNLIVHEDLGLSKLSARWVPRAL 386
N VG +++QIA+ G+SNG ++ + GL + + R++ R L
Sbjct: 23 NEVGMHEASIAQIAKRAGVSNGIISHYFRDKNGLLEATMRYLIRHL 68
>sp|P39427|Y01H_BPT4 Hypothetical 8.1 kDa protein in modB-mrh intergenic region
Length = 67
Score = 30.8 bits (68), Expect = 4.2
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +3
Query: 486 DETWIYQYDPETKRQSKQWLPRGSSGPIKFKS*KSVLKVMATIFWD 623
D+ W+ Q + E + +S++W+ S + K +S LK+M I+ D
Sbjct: 20 DDGWVEQANKEMQNESEEWMKSMISAEKEKKLERSALKLMRDIYGD 65
>sp|Q4J939|PGK_SULAC Phosphoglycerate kinase
Length = 415
Score = 29.6 bits (65), Expect = 9.4
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Frame = +3
Query: 243 IQNRVGDRRITVSQIAE----SLGISNGSVNLIVHEDLGLSKLSARWVPRA 383
I+NRV DR +T +AE + GI+ G N+ V E+ GL L VPRA
Sbjct: 222 IKNRVADRILTGGLVAELFAVAKGINLGKKNMQVLENKGLLSL----VPRA 268
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,723,360
Number of Sequences: 369166
Number of extensions: 1434244
Number of successful extensions: 3142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3141
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)