Planaria EST Database


DrC_01253

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01253
         (768 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8ZGV8|BETI_YERPE  HTH-type transcriptional regulator betI      31   3.2  
sp|P39427|Y01H_BPT4  Hypothetical 8.1 kDa protein in modB-mr...    31   4.2  
sp|Q4J939|PGK_SULAC  Phosphoglycerate kinase                       30   9.4  
>sp|Q8ZGV8|BETI_YERPE HTH-type transcriptional regulator betI
          Length = 198

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +3

Query: 249 NRVGDRRITVSQIAESLGISNGSVNLIVHEDLGLSKLSARWVPRAL 386
           N VG    +++QIA+  G+SNG ++    +  GL + + R++ R L
Sbjct: 23  NEVGMHEASIAQIAKRAGVSNGIISHYFRDKNGLLEATMRYLIRHL 68
>sp|P39427|Y01H_BPT4 Hypothetical 8.1 kDa protein in modB-mrh intergenic region
          Length = 67

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 486 DETWIYQYDPETKRQSKQWLPRGSSGPIKFKS*KSVLKVMATIFWD 623
           D+ W+ Q + E + +S++W+    S   + K  +S LK+M  I+ D
Sbjct: 20  DDGWVEQANKEMQNESEEWMKSMISAEKEKKLERSALKLMRDIYGD 65
>sp|Q4J939|PGK_SULAC Phosphoglycerate kinase
          Length = 415

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
 Frame = +3

Query: 243 IQNRVGDRRITVSQIAE----SLGISNGSVNLIVHEDLGLSKLSARWVPRA 383
           I+NRV DR +T   +AE    + GI+ G  N+ V E+ GL  L    VPRA
Sbjct: 222 IKNRVADRILTGGLVAELFAVAKGINLGKKNMQVLENKGLLSL----VPRA 268
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,723,360
Number of Sequences: 369166
Number of extensions: 1434244
Number of successful extensions: 3142
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3141
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)