Planaria EST Database


DrC_01251

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01251
         (816 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P53739|KN8R_YEAST  Probable serine/threonine-protein kina...    37   0.065
sp|P32591|SWI3_YEAST  Transcription regulatory protein SWI3 ...    35   0.19 
sp|P04931|ARP_PLAFA  Asparagine-rich protein (AG319) (ARP)         34   0.55 
sp|P13824|ARP2_PLAFA  Clustered-asparagine-rich protein (CARP)     33   0.72 
sp|Q10021|RSP5_CAEEL  Probable splicing factor, arginine/ser...    33   1.2  
sp|P34756|FAB1_YEAST  1-phosphatidylinositol-3-phosphate 5-k...    33   1.2  
sp|P75177|DPO3X_MYCPN  DNA polymerase III subunit gamma/tau        32   2.1  
sp|Q9ZNT9|FIS2_ARATH  Polycomb group protein FERTILIZATION-I...    32   2.1  
sp|P22987|KIN1_SCHPO  Protein kinase kin1                          32   2.7  
sp|P32583|SRP40_YEAST  Suppressor protein SRP40                    31   3.6  
>sp|P53739|KN8R_YEAST Probable serine/threonine-protein kinase YNR047W
          Length = 893

 Score = 37.0 bits (84), Expect = 0.065
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 16/116 (13%)
 Frame = +3

Query: 507 GDNIFKGIKIE-IKPQEAKSDSS--------SIPDTDVPTKNKFKNNDNLELFK----AV 647
           GD+     K+  +KP  + +++S        +IP+TDV    K  + D  E  +      
Sbjct: 115 GDSASSSSKLRYVKPMTSVANASPASPPLSPTIPETDVLQTPKMVHIDQHEHEREHSNCG 174

Query: 648 QAFKISPNIFRETPRRTGDSRSNTPS---LPNATNDNSSSQISVRDSRRKKNSRSQ 806
               +S + F  T  RTG  R  +PS   +P+  ++NSSS  ++R +  + +S SQ
Sbjct: 175 SPIMLSSSSFSPTVARTGTGRRRSPSTPIMPSQNSNNSSSTSAIRPNNYRHHSGSQ 230
>sp|P32591|SWI3_YEAST Transcription regulatory protein SWI3 (SWI/SNF complex component
           SWI3) (Transcription factor TYE2)
          Length = 825

 Score = 35.4 bits (80), Expect = 0.19
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = +3

Query: 549 QEAKSDSSSIPDTDVPTKNKFKNNDNLELFKAVQAFKISPNIFRETPRRTGDSRSNTPSL 728
           Q  K DS   P T+          DN +          S N+F ET     ++ +NTPS+
Sbjct: 82  QANKLDSQETPSTEESRAQNVFGQDNED----------SDNLFGETESSVSNNEANTPSI 131

Query: 729 PNATNDNSSSQISVRDSRRKKNS 797
           P    DN +++ ++++    ++S
Sbjct: 132 PTNPVDNENNKPAIKEDSTIQDS 154
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
          Length = 537

 Score = 33.9 bits (76), Expect = 0.55
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +3

Query: 219 QLSNVSDNNSINLATVVNDSNNIPKKQKKMNIFRRKRNSPSN 344
           Q +N++ NNSIN+   +N++NNI     KM    + +NS +N
Sbjct: 212 QNNNMNRNNSINIKRNLNNNNNINNNMNKMGSQDKNQNSNNN 253

 Score = 33.1 bits (74), Expect = 0.93
 Identities = 41/215 (19%), Positives = 82/215 (38%), Gaps = 5/215 (2%)
 Frame = +3

Query: 186 NAKDSMNDLLDQLSNVSDNNSINLATVVNDSNNIPKKQKKMNIFRRKRNSPSNGVNQKPL 365
           N K+SMN+ ++  +N+++N + N+   +N + N        N      N+  N +N    
Sbjct: 262 NRKNSMNNNMN--NNMNNNMNHNMNNNMNHNMNNNMNHNMNNNMNHNMNNNMNNIN---- 315

Query: 366 QDIDKDKSSHSLGEYLVDEEGFTIKPSHPWNDHNQNXXXXXXXXXXAGDNIFKGIKIEIK 545
             +D D S +      +    +    S+  N +  N            +N       +  
Sbjct: 316 -SLDSDMSPNYHAHVKMSMMNYNNNESNTANPNQMNFEQTNNDNMKRENNNMNNYGYDDN 374

Query: 546 PQEAKSDSSSIPDTD-----VPTKNKFKNNDNLELFKAVQAFKISPNIFRETPRRTGDSR 710
                +++   P TD     V   N + NN+N  +  AV     + N  +       +  
Sbjct: 375 TVHVNNNT---PSTDFFSRAVGYNNNYLNNNN-NMNSAVNNNSSNGNNMKNENSENKNVA 430

Query: 711 SNTPSLPNATNDNSSSQISVRDSRRKKNSRSQSEQ 815
            N  SL N  N N+++ I++ +S    N+ + + +
Sbjct: 431 DNNDSLNN--NKNNNNNINMNESINNNNTLNNNNE 463

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 20/73 (27%), Positives = 37/73 (50%)
 Frame = +3

Query: 180 TPNAKDSMNDLLDQLSNVSDNNSINLATVVNDSNNIPKKQKKMNIFRRKRNSPSNGVNQK 359
           T N  D+MN + +  +N ++NN+ N     N  NN   +   +NI R   N+ +   N  
Sbjct: 181 TQNNNDNMN-INEDNNNNNNNNNNNNGVFSNYQNNNMNRNNSINIKRNLNNNNNINNNMN 239

Query: 360 PLQDIDKDKSSHS 398
            +   DK+++S++
Sbjct: 240 KMGSQDKNQNSNN 252
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
          Length = 443

 Score = 33.5 bits (75), Expect = 0.72
 Identities = 29/149 (19%), Positives = 66/149 (44%)
 Frame = +3

Query: 195 DSMNDLLDQLSNVSDNNSINLATVVNDSNNIPKKQKKMNIFRRKRNSPSNGVNQKPLQDI 374
           ++MN+     +N S+NN+ N     N+  N   K K MN      N+ +N  N   + ++
Sbjct: 153 NNMNNYNFYNNNSSNNNNNNQTNTQNNFMNRNMKNKNMN-----NNNNNNNSNNNMMMNM 207

Query: 375 DKDKSSHSLGEYLVDEEGFTIKPSHPWNDHNQNXXXXXXXXXXAGDNIFKGIKIEIKPQE 554
           + + +       ++++  F +  ++ +N++ +N            D    G   E+ P  
Sbjct: 208 NFNNNQQMNNNPMLNQNNFMLNNNNNYNNNAKN----------VNDMYRDG---EMSPNH 254

Query: 555 AKSDSSSIPDTDVPTKNKFKNNDNLELFK 641
             +++++I + +    N   NN+N  +F+
Sbjct: 255 LNNNNNNINNNN--NNNNNNNNNNNVMFR 281
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5 (RNA-binding
           protein srp-3) (CeSC35-2)
          Length = 208

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = +3

Query: 678 RETPRRTGDSRSNTPSLPNATNDNSSSQISVRDSRRKKNSRSQS 809
           R  PRR   SR    S  + +  +S S+  VR+SRR+  SRS S
Sbjct: 99  RTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPS 142
>sp|P34756|FAB1_YEAST 1-phosphatidylinositol-3-phosphate 5-kinase FAB1
           (Phosphatidylinositol-3-phosphate 5-kinase) (Type III
           PIP kinase)
          Length = 2278

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 21/74 (28%), Positives = 38/74 (51%)
 Frame = +3

Query: 204 NDLLDQLSNVSDNNSINLATVVNDSNNIPKKQKKMNIFRRKRNSPSNGVNQKPLQDIDKD 383
           ND  +  +N ++NN+ N A+ + D+NNIP             N  +  +++K    + K 
Sbjct: 574 NDNNNNNNNNNNNNNNNSASGIADNNNIPSND----------NGTTFTLDKKKRNPLTKS 623

Query: 384 KSSHSLGEYLVDEE 425
           KS+ +  EY ++EE
Sbjct: 624 KSTSAYLEYPLNEE 637
>sp|P75177|DPO3X_MYCPN DNA polymerase III subunit gamma/tau
          Length = 681

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
 Frame = +3

Query: 189 AKDSMND---LLDQLSNVSDNNSINLATVVNDSNNIPKKQK 302
           A+ S+ D   LLDQ+SN S++ +I+LA V    N + K+QK
Sbjct: 208 AQGSLRDGLSLLDQISNFSESKTISLADVEKTFNLLDKEQK 248
>sp|Q9ZNT9|FIS2_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2
          Length = 692

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = +3

Query: 537 EIKPQEAKSDS-SSIPDTDVPTKNKF--KNNDNLELFKAVQAFKISPNIFRETPRRTGDS 707
           E K +    D+ SS P      KNK   KN+DN+      ++ K + NI   T     +S
Sbjct: 394 EPKVRHVNDDNVSSTPRAHSSKKNKSTRKNDDNIPSPPKTRSSKKTSNILTRTQPAIAES 453

Query: 708 RSNTPSLPNATNDNSSSQISVRDSRRKKNSRSQSE 812
               P +P+  +D  SS      S++ K++  + +
Sbjct: 454 E---PKVPHVNDDKVSSTPRAHSSKKNKSTHKKDD 485
>sp|P22987|KIN1_SCHPO Protein kinase kin1
          Length = 891

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
 Frame = +3

Query: 555 AKSDSSSIPDTDVPTKNKFKNNDNLELFKAVQAFKISPNIFRET------PRRTGDSRSN 716
           AK+  SS+P + V   +  +    +    A +  + SP + R T      P    +S S 
Sbjct: 526 AKTPVSSVPSSPVQPTSYNRTLPPMPEVVAYKGDEESPRVSRNTSLARRKPLPDTESHSP 585

Query: 717 TPSLPNATNDNSSSQISVRDSRRKKNSRSQS 809
           +PS  ++   N SS      SRRK+N  S S
Sbjct: 586 SPSATSSIKKNPSSIFRRFSSRRKQNKSSTS 616
>sp|P32583|SRP40_YEAST Suppressor protein SRP40
          Length = 406

 Score = 31.2 bits (69), Expect = 3.6
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +3

Query: 555 AKSDSSSIPDTDVPTKNKFKNNDNLELFKAVQAFKISP--NIFRETPRRTGDSRSNTPSL 728
           +  +SSS  +++  TK + + +DN E  K  +  K  P  +   E+      S S + S 
Sbjct: 112 SSDESSSESESEDETKKRARESDN-EDAKETKKAKTEPESSSSSESSSSGSSSSSESESG 170

Query: 729 PNATNDNSSSQISVRDSRRKKNSRSQS 809
             + +D+SSS  S  DS     S SQS
Sbjct: 171 SESDSDSSSSSSSSSDSESDSESDSQS 197
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,574,996
Number of Sequences: 369166
Number of extensions: 1324519
Number of successful extensions: 4920
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4850
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)