Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01251
(816 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53739|KN8R_YEAST Probable serine/threonine-protein kina... 37 0.065
sp|P32591|SWI3_YEAST Transcription regulatory protein SWI3 ... 35 0.19
sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP) 34 0.55
sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP) 33 0.72
sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/ser... 33 1.2
sp|P34756|FAB1_YEAST 1-phosphatidylinositol-3-phosphate 5-k... 33 1.2
sp|P75177|DPO3X_MYCPN DNA polymerase III subunit gamma/tau 32 2.1
sp|Q9ZNT9|FIS2_ARATH Polycomb group protein FERTILIZATION-I... 32 2.1
sp|P22987|KIN1_SCHPO Protein kinase kin1 32 2.7
sp|P32583|SRP40_YEAST Suppressor protein SRP40 31 3.6
>sp|P53739|KN8R_YEAST Probable serine/threonine-protein kinase YNR047W
Length = 893
Score = 37.0 bits (84), Expect = 0.065
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 16/116 (13%)
Frame = +3
Query: 507 GDNIFKGIKIE-IKPQEAKSDSS--------SIPDTDVPTKNKFKNNDNLELFK----AV 647
GD+ K+ +KP + +++S +IP+TDV K + D E +
Sbjct: 115 GDSASSSSKLRYVKPMTSVANASPASPPLSPTIPETDVLQTPKMVHIDQHEHEREHSNCG 174
Query: 648 QAFKISPNIFRETPRRTGDSRSNTPS---LPNATNDNSSSQISVRDSRRKKNSRSQ 806
+S + F T RTG R +PS +P+ ++NSSS ++R + + +S SQ
Sbjct: 175 SPIMLSSSSFSPTVARTGTGRRRSPSTPIMPSQNSNNSSSTSAIRPNNYRHHSGSQ 230
>sp|P32591|SWI3_YEAST Transcription regulatory protein SWI3 (SWI/SNF complex component
SWI3) (Transcription factor TYE2)
Length = 825
Score = 35.4 bits (80), Expect = 0.19
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = +3
Query: 549 QEAKSDSSSIPDTDVPTKNKFKNNDNLELFKAVQAFKISPNIFRETPRRTGDSRSNTPSL 728
Q K DS P T+ DN + S N+F ET ++ +NTPS+
Sbjct: 82 QANKLDSQETPSTEESRAQNVFGQDNED----------SDNLFGETESSVSNNEANTPSI 131
Query: 729 PNATNDNSSSQISVRDSRRKKNS 797
P DN +++ ++++ ++S
Sbjct: 132 PTNPVDNENNKPAIKEDSTIQDS 154
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
Length = 537
Score = 33.9 bits (76), Expect = 0.55
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 219 QLSNVSDNNSINLATVVNDSNNIPKKQKKMNIFRRKRNSPSN 344
Q +N++ NNSIN+ +N++NNI KM + +NS +N
Sbjct: 212 QNNNMNRNNSINIKRNLNNNNNINNNMNKMGSQDKNQNSNNN 253
Score = 33.1 bits (74), Expect = 0.93
Identities = 41/215 (19%), Positives = 82/215 (38%), Gaps = 5/215 (2%)
Frame = +3
Query: 186 NAKDSMNDLLDQLSNVSDNNSINLATVVNDSNNIPKKQKKMNIFRRKRNSPSNGVNQKPL 365
N K+SMN+ ++ +N+++N + N+ +N + N N N+ N +N
Sbjct: 262 NRKNSMNNNMN--NNMNNNMNHNMNNNMNHNMNNNMNHNMNNNMNHNMNNNMNNIN---- 315
Query: 366 QDIDKDKSSHSLGEYLVDEEGFTIKPSHPWNDHNQNXXXXXXXXXXAGDNIFKGIKIEIK 545
+D D S + + + S+ N + N +N +
Sbjct: 316 -SLDSDMSPNYHAHVKMSMMNYNNNESNTANPNQMNFEQTNNDNMKRENNNMNNYGYDDN 374
Query: 546 PQEAKSDSSSIPDTD-----VPTKNKFKNNDNLELFKAVQAFKISPNIFRETPRRTGDSR 710
+++ P TD V N + NN+N + AV + N + +
Sbjct: 375 TVHVNNNT---PSTDFFSRAVGYNNNYLNNNN-NMNSAVNNNSSNGNNMKNENSENKNVA 430
Query: 711 SNTPSLPNATNDNSSSQISVRDSRRKKNSRSQSEQ 815
N SL N N N+++ I++ +S N+ + + +
Sbjct: 431 DNNDSLNN--NKNNNNNINMNESINNNNTLNNNNE 463
Score = 32.7 bits (73), Expect = 1.2
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +3
Query: 180 TPNAKDSMNDLLDQLSNVSDNNSINLATVVNDSNNIPKKQKKMNIFRRKRNSPSNGVNQK 359
T N D+MN + + +N ++NN+ N N NN + +NI R N+ + N
Sbjct: 181 TQNNNDNMN-INEDNNNNNNNNNNNNGVFSNYQNNNMNRNNSINIKRNLNNNNNINNNMN 239
Query: 360 PLQDIDKDKSSHS 398
+ DK+++S++
Sbjct: 240 KMGSQDKNQNSNN 252
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
Length = 443
Score = 33.5 bits (75), Expect = 0.72
Identities = 29/149 (19%), Positives = 66/149 (44%)
Frame = +3
Query: 195 DSMNDLLDQLSNVSDNNSINLATVVNDSNNIPKKQKKMNIFRRKRNSPSNGVNQKPLQDI 374
++MN+ +N S+NN+ N N+ N K K MN N+ +N N + ++
Sbjct: 153 NNMNNYNFYNNNSSNNNNNNQTNTQNNFMNRNMKNKNMN-----NNNNNNNSNNNMMMNM 207
Query: 375 DKDKSSHSLGEYLVDEEGFTIKPSHPWNDHNQNXXXXXXXXXXAGDNIFKGIKIEIKPQE 554
+ + + ++++ F + ++ +N++ +N D G E+ P
Sbjct: 208 NFNNNQQMNNNPMLNQNNFMLNNNNNYNNNAKN----------VNDMYRDG---EMSPNH 254
Query: 555 AKSDSSSIPDTDVPTKNKFKNNDNLELFK 641
+++++I + + N NN+N +F+
Sbjct: 255 LNNNNNNINNNN--NNNNNNNNNNNVMFR 281
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5 (RNA-binding
protein srp-3) (CeSC35-2)
Length = 208
Score = 32.7 bits (73), Expect = 1.2
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 678 RETPRRTGDSRSNTPSLPNATNDNSSSQISVRDSRRKKNSRSQS 809
R PRR SR S + + +S S+ VR+SRR+ SRS S
Sbjct: 99 RTPPRRRSRSRDRKRSRRSRSRSSSRSRSPVRESRRRSESRSPS 142
>sp|P34756|FAB1_YEAST 1-phosphatidylinositol-3-phosphate 5-kinase FAB1
(Phosphatidylinositol-3-phosphate 5-kinase) (Type III
PIP kinase)
Length = 2278
Score = 32.7 bits (73), Expect = 1.2
Identities = 21/74 (28%), Positives = 38/74 (51%)
Frame = +3
Query: 204 NDLLDQLSNVSDNNSINLATVVNDSNNIPKKQKKMNIFRRKRNSPSNGVNQKPLQDIDKD 383
ND + +N ++NN+ N A+ + D+NNIP N + +++K + K
Sbjct: 574 NDNNNNNNNNNNNNNNNSASGIADNNNIPSND----------NGTTFTLDKKKRNPLTKS 623
Query: 384 KSSHSLGEYLVDEE 425
KS+ + EY ++EE
Sbjct: 624 KSTSAYLEYPLNEE 637
>sp|P75177|DPO3X_MYCPN DNA polymerase III subunit gamma/tau
Length = 681
Score = 32.0 bits (71), Expect = 2.1
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
Frame = +3
Query: 189 AKDSMND---LLDQLSNVSDNNSINLATVVNDSNNIPKKQK 302
A+ S+ D LLDQ+SN S++ +I+LA V N + K+QK
Sbjct: 208 AQGSLRDGLSLLDQISNFSESKTISLADVEKTFNLLDKEQK 248
>sp|Q9ZNT9|FIS2_ARATH Polycomb group protein FERTILIZATION-INDEPENDENT SEED 2
Length = 692
Score = 32.0 bits (71), Expect = 2.1
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
Frame = +3
Query: 537 EIKPQEAKSDS-SSIPDTDVPTKNKF--KNNDNLELFKAVQAFKISPNIFRETPRRTGDS 707
E K + D+ SS P KNK KN+DN+ ++ K + NI T +S
Sbjct: 394 EPKVRHVNDDNVSSTPRAHSSKKNKSTRKNDDNIPSPPKTRSSKKTSNILTRTQPAIAES 453
Query: 708 RSNTPSLPNATNDNSSSQISVRDSRRKKNSRSQSE 812
P +P+ +D SS S++ K++ + +
Sbjct: 454 E---PKVPHVNDDKVSSTPRAHSSKKNKSTHKKDD 485
>sp|P22987|KIN1_SCHPO Protein kinase kin1
Length = 891
Score = 31.6 bits (70), Expect = 2.7
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 6/91 (6%)
Frame = +3
Query: 555 AKSDSSSIPDTDVPTKNKFKNNDNLELFKAVQAFKISPNIFRET------PRRTGDSRSN 716
AK+ SS+P + V + + + A + + SP + R T P +S S
Sbjct: 526 AKTPVSSVPSSPVQPTSYNRTLPPMPEVVAYKGDEESPRVSRNTSLARRKPLPDTESHSP 585
Query: 717 TPSLPNATNDNSSSQISVRDSRRKKNSRSQS 809
+PS ++ N SS SRRK+N S S
Sbjct: 586 SPSATSSIKKNPSSIFRRFSSRRKQNKSSTS 616
>sp|P32583|SRP40_YEAST Suppressor protein SRP40
Length = 406
Score = 31.2 bits (69), Expect = 3.6
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = +3
Query: 555 AKSDSSSIPDTDVPTKNKFKNNDNLELFKAVQAFKISP--NIFRETPRRTGDSRSNTPSL 728
+ +SSS +++ TK + + +DN E K + K P + E+ S S + S
Sbjct: 112 SSDESSSESESEDETKKRARESDN-EDAKETKKAKTEPESSSSSESSSSGSSSSSESESG 170
Query: 729 PNATNDNSSSQISVRDSRRKKNSRSQS 809
+ +D+SSS S DS S SQS
Sbjct: 171 SESDSDSSSSSSSSSDSESDSESDSQS 197
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,574,996
Number of Sequences: 369166
Number of extensions: 1324519
Number of successful extensions: 4920
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4850
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7811456130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)