Planaria EST Database


DrC_01245

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01245
         (798 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P02382|RMS5_EMENI  Mitochondrial ribosomal protein S5           33   0.90 
sp|O51044|Y011_BORBU  Hypothetical protein BB0011                  31   4.5  
sp|P52304|POLO_DROME  Serine/threonine-protein kinase polo         30   5.8  
sp|P57620|EX1_BUCAI  Exodeoxyribonuclease I (Exonuclease I) ...    30   5.8  
sp|Q9D9X6|ZSWM2_MOUSE  Zinc finger SWIM domain containing pr...    30   7.6  
sp|P53242|YG29_YEAST  Hypothetical 34.0 kDa protein in VHT1-...    30   7.6  
sp|Q6MT07|DNAJ_MYCMS  Chaperone protein dnaJ                       30   9.9  
sp|Q9TLW9|TILS_CYACA  tRNA(Ile)-lysidine synthase (tRNA(Ile)...    30   9.9  
>sp|P02382|RMS5_EMENI Mitochondrial ribosomal protein S5
          Length = 410

 Score = 33.1 bits (74), Expect = 0.90
 Identities = 18/61 (29%), Positives = 32/61 (52%)
 Frame = +1

Query: 175 ITGHSKSSMTETSIFEVKNIKLNETFSKIISFQVPRSIKRNKSYIINAMLTPLNKGKYDH 354
           +T   K S T T++    + K+N+  +      + +SIKR K Y+    L  +NK K+++
Sbjct: 155 LTQQQKKSKTLTNVLPKYSTKVNKIQNIYYRTYIKKSIKRLKYYMYYKQLLYINKAKFEN 214

Query: 355 S 357
           S
Sbjct: 215 S 215
>sp|O51044|Y011_BORBU Hypothetical protein BB0011
          Length = 279

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 6/141 (4%)
 Frame = +1

Query: 91  KIFHLEKCNRIEYCIYSKFDDTVEYELRITGHSKSSMTETSIFEVKNIKLNETFSKIISF 270
           +I+ +  C +   C ++ F      E      +K  + +   +E K  K+N  F  +++F
Sbjct: 58  RIYSITVCPK---CYFAAFPS----EFNSIPKNKKEILQNKKYERK--KINTIFDNMLNF 108

Query: 271 QVPRSIKRNKSYIINAMLTPLNKGKYDH---SNELSMELTKLTIPLPTSYNLLGE---NK 432
             PR++K   +  I AML+      Y+H   +   ++   K  I    ++  L +   NK
Sbjct: 109 SKPRTLKEGAASYILAMLS------YEHLEKNYNPTLNQAKSAIRAAWTFEDLEKEEPNK 162

Query: 433 SSNVLEENHHRPEMHLYNKIV 495
           + N L++  +    +LY  ++
Sbjct: 163 NYNYLQKIFYHKAAYLYKLVI 183
>sp|P52304|POLO_DROME Serine/threonine-protein kinase polo
          Length = 576

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
 Frame = +1

Query: 217 FEVKNIKLNETFSKI--ISFQVPRSIKRNKSYIINAMLTPLNKGKYDHSNELSMEL---T 381
           FE K +K  +T+SKI    ++VP  +++  + ++ AML P  + +      L+ E    +
Sbjct: 223 FETKTLK--DTYSKIKKCEYRVPSYLRKPAADMVIAMLQPNPESRPAIGQLLNFEFLKGS 280

Query: 382 KLTIPLPTSYNLLGENKSSN-VLEENHHRPEMHLYNKI 492
           K+ + LP+S   +     SN  +E++ HR  +   N I
Sbjct: 281 KVPMFLPSSCLTMAPRIGSNDTIEDSMHRKPLMEMNGI 318
>sp|P57620|EX1_BUCAI Exodeoxyribonuclease I (Exonuclease I) (DNA
           deoxyribophosphodiesterase) (dRPase)
          Length = 413

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
 Frame = +1

Query: 403 TSYNLLGENKSSNVLEENHHRPEMHLYNKIVLTTL---SEPVVFDYY---QIPQEIFHLL 564
           TS+ L    K++N++  N H     +Y  I +  L    +P +FD++   +   E++ L 
Sbjct: 162 TSFKLSDLTKTNNIVHLNAHNAVSDVYATIEIAKLVKKKQPRLFDFFFKIRKKNELYKL- 220

Query: 565 KVDRSNDGKLIYQPIIYFNTF 627
            +D  N     +QPIIY + +
Sbjct: 221 -IDLRN-----FQPIIYISAY 235
>sp|Q9D9X6|ZSWM2_MOUSE Zinc finger SWIM domain containing protein 2
          Length = 631

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 466 PEMHLYNKIVLTTLSEPVVFDYYQIPQEIFHLLKVDRSNDGKLIY 600
           P +  YN  VLTTL  P   +Y  I  +    +K+D SN  KL++
Sbjct: 442 PSIPQYNSKVLTTLQNP-SDNYQNITMDDLCSVKLDNSNSRKLVF 485
>sp|P53242|YG29_YEAST Hypothetical 34.0 kDa protein in VHT1-ROM1 intergenic region
          Length = 292

 Score = 30.0 bits (66), Expect = 7.6
 Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
 Frame = +1

Query: 313 NAMLTPLNKGKYDHSNELSMELTKLTIPLPTSYNLLGENKSSNVLEENHH--RPEMHLYN 486
           N  LT  N G+Y+H +   M    + +     + L  E + + +L++NHH        + 
Sbjct: 187 NWSLTERNFGQYNHESAEFMNQRYIYLKWKERFLLDDEEQENLMLDDNHHLEGASFEGFY 246

Query: 487 KIVLTTLSEPVVFDYYQIPQEIFHLLKVDRSN 582
            + L  L+  V   YY    E+F  L++  +N
Sbjct: 247 YVCLDQLTGSVEGYYYHPACELFQKLELVPTN 278
>sp|Q6MT07|DNAJ_MYCMS Chaperone protein dnaJ
          Length = 372

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +1

Query: 244 ETFSKIISFQVPRSIKRNKSYIINAMLTPLNKGKYDHSNELSME--LTKLTIPLPTSYNL 417
           +T    I +++P+SI  N+  IIN      NKG Y   N+      + K+ I +P + N 
Sbjct: 296 KTLDGDIKYKLPKSINSNEFIIIN------NKGLYKSINKDKRGDLIIKVNIVVPKNLNK 349

Query: 418 LGENKSSNVLEENHHRPEMHL 480
             +     + E+    PE ++
Sbjct: 350 KEKELIEQIYEQTSFNPENNI 370
>sp|Q9TLW9|TILS_CYACA tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 314

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 11/66 (16%)
 Frame = +1

Query: 142 KFDDTVEYELRITGHSKSSMTETSIFE-VKNIKLNE------TF---SKIISFQVP-RSI 288
           K   + EY   +T H+ S ++ET+I+  V+N++++E      TF    K +S   P  S+
Sbjct: 110 KISLSFEYSYLLTAHTLSDISETTIYRLVRNLRISEINNLLFTFLYIKKTLSISRPLASV 169

Query: 289 KRNKSY 306
            RN +Y
Sbjct: 170 TRNDTY 175
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,700,863
Number of Sequences: 369166
Number of extensions: 1541347
Number of successful extensions: 3445
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3444
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)