Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01245
(798 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P02382|RMS5_EMENI Mitochondrial ribosomal protein S5 33 0.90
sp|O51044|Y011_BORBU Hypothetical protein BB0011 31 4.5
sp|P52304|POLO_DROME Serine/threonine-protein kinase polo 30 5.8
sp|P57620|EX1_BUCAI Exodeoxyribonuclease I (Exonuclease I) ... 30 5.8
sp|Q9D9X6|ZSWM2_MOUSE Zinc finger SWIM domain containing pr... 30 7.6
sp|P53242|YG29_YEAST Hypothetical 34.0 kDa protein in VHT1-... 30 7.6
sp|Q6MT07|DNAJ_MYCMS Chaperone protein dnaJ 30 9.9
sp|Q9TLW9|TILS_CYACA tRNA(Ile)-lysidine synthase (tRNA(Ile)... 30 9.9
>sp|P02382|RMS5_EMENI Mitochondrial ribosomal protein S5
Length = 410
Score = 33.1 bits (74), Expect = 0.90
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +1
Query: 175 ITGHSKSSMTETSIFEVKNIKLNETFSKIISFQVPRSIKRNKSYIINAMLTPLNKGKYDH 354
+T K S T T++ + K+N+ + + +SIKR K Y+ L +NK K+++
Sbjct: 155 LTQQQKKSKTLTNVLPKYSTKVNKIQNIYYRTYIKKSIKRLKYYMYYKQLLYINKAKFEN 214
Query: 355 S 357
S
Sbjct: 215 S 215
>sp|O51044|Y011_BORBU Hypothetical protein BB0011
Length = 279
Score = 30.8 bits (68), Expect = 4.5
Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 6/141 (4%)
Frame = +1
Query: 91 KIFHLEKCNRIEYCIYSKFDDTVEYELRITGHSKSSMTETSIFEVKNIKLNETFSKIISF 270
+I+ + C + C ++ F E +K + + +E K K+N F +++F
Sbjct: 58 RIYSITVCPK---CYFAAFPS----EFNSIPKNKKEILQNKKYERK--KINTIFDNMLNF 108
Query: 271 QVPRSIKRNKSYIINAMLTPLNKGKYDH---SNELSMELTKLTIPLPTSYNLLGE---NK 432
PR++K + I AML+ Y+H + ++ K I ++ L + NK
Sbjct: 109 SKPRTLKEGAASYILAMLS------YEHLEKNYNPTLNQAKSAIRAAWTFEDLEKEEPNK 162
Query: 433 SSNVLEENHHRPEMHLYNKIV 495
+ N L++ + +LY ++
Sbjct: 163 NYNYLQKIFYHKAAYLYKLVI 183
>sp|P52304|POLO_DROME Serine/threonine-protein kinase polo
Length = 576
Score = 30.4 bits (67), Expect = 5.8
Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Frame = +1
Query: 217 FEVKNIKLNETFSKI--ISFQVPRSIKRNKSYIINAMLTPLNKGKYDHSNELSMEL---T 381
FE K +K +T+SKI ++VP +++ + ++ AML P + + L+ E +
Sbjct: 223 FETKTLK--DTYSKIKKCEYRVPSYLRKPAADMVIAMLQPNPESRPAIGQLLNFEFLKGS 280
Query: 382 KLTIPLPTSYNLLGENKSSN-VLEENHHRPEMHLYNKI 492
K+ + LP+S + SN +E++ HR + N I
Sbjct: 281 KVPMFLPSSCLTMAPRIGSNDTIEDSMHRKPLMEMNGI 318
>sp|P57620|EX1_BUCAI Exodeoxyribonuclease I (Exonuclease I) (DNA
deoxyribophosphodiesterase) (dRPase)
Length = 413
Score = 30.4 bits (67), Expect = 5.8
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Frame = +1
Query: 403 TSYNLLGENKSSNVLEENHHRPEMHLYNKIVLTTL---SEPVVFDYY---QIPQEIFHLL 564
TS+ L K++N++ N H +Y I + L +P +FD++ + E++ L
Sbjct: 162 TSFKLSDLTKTNNIVHLNAHNAVSDVYATIEIAKLVKKKQPRLFDFFFKIRKKNELYKL- 220
Query: 565 KVDRSNDGKLIYQPIIYFNTF 627
+D N +QPIIY + +
Sbjct: 221 -IDLRN-----FQPIIYISAY 235
>sp|Q9D9X6|ZSWM2_MOUSE Zinc finger SWIM domain containing protein 2
Length = 631
Score = 30.0 bits (66), Expect = 7.6
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 466 PEMHLYNKIVLTTLSEPVVFDYYQIPQEIFHLLKVDRSNDGKLIY 600
P + YN VLTTL P +Y I + +K+D SN KL++
Sbjct: 442 PSIPQYNSKVLTTLQNP-SDNYQNITMDDLCSVKLDNSNSRKLVF 485
>sp|P53242|YG29_YEAST Hypothetical 34.0 kDa protein in VHT1-ROM1 intergenic region
Length = 292
Score = 30.0 bits (66), Expect = 7.6
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +1
Query: 313 NAMLTPLNKGKYDHSNELSMELTKLTIPLPTSYNLLGENKSSNVLEENHH--RPEMHLYN 486
N LT N G+Y+H + M + + + L E + + +L++NHH +
Sbjct: 187 NWSLTERNFGQYNHESAEFMNQRYIYLKWKERFLLDDEEQENLMLDDNHHLEGASFEGFY 246
Query: 487 KIVLTTLSEPVVFDYYQIPQEIFHLLKVDRSN 582
+ L L+ V YY E+F L++ +N
Sbjct: 247 YVCLDQLTGSVEGYYYHPACELFQKLELVPTN 278
>sp|Q6MT07|DNAJ_MYCMS Chaperone protein dnaJ
Length = 372
Score = 29.6 bits (65), Expect = 9.9
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 244 ETFSKIISFQVPRSIKRNKSYIINAMLTPLNKGKYDHSNELSME--LTKLTIPLPTSYNL 417
+T I +++P+SI N+ IIN NKG Y N+ + K+ I +P + N
Sbjct: 296 KTLDGDIKYKLPKSINSNEFIIIN------NKGLYKSINKDKRGDLIIKVNIVVPKNLNK 349
Query: 418 LGENKSSNVLEENHHRPEMHL 480
+ + E+ PE ++
Sbjct: 350 KEKELIEQIYEQTSFNPENNI 370
>sp|Q9TLW9|TILS_CYACA tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidine synthetase)
(tRNA(Ile)-2-lysyl-cytidine synthase)
Length = 314
Score = 29.6 bits (65), Expect = 9.9
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 11/66 (16%)
Frame = +1
Query: 142 KFDDTVEYELRITGHSKSSMTETSIFE-VKNIKLNE------TF---SKIISFQVP-RSI 288
K + EY +T H+ S ++ET+I+ V+N++++E TF K +S P S+
Sbjct: 110 KISLSFEYSYLLTAHTLSDISETTIYRLVRNLRISEINNLLFTFLYIKKTLSISRPLASV 169
Query: 289 KRNKSY 306
RN +Y
Sbjct: 170 TRNDTY 175
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,700,863
Number of Sequences: 369166
Number of extensions: 1541347
Number of successful extensions: 3445
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3444
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7522142940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)