Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01244
(878 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8M9X3|CEMA_CHAGL Chloroplast envelope membrane protein 37 0.095
sp|Q57789|Y343_METJA Hypothetical protein MJ0343 34 0.61
sp|Q58899|YF04_METJA Putative UDP-N-acetylglucosamine 2-epi... 33 0.80
sp|Q8K987|PPID_BUCAP Peptidyl-prolyl cis-trans isomerase D ... 33 1.0
sp|P24465|C71A1_PERAE Cytochrome P450 71A1 (CYPLXXIA1) (ARP-2) 33 1.4
sp|Q92908|GATA6_HUMAN Transcription factor GATA-6 (GATA-bin... 25 2.6
sp|Q59U11|GRC3_CANAL Protein GRC3 32 3.0
sp|P54444|YRKQ_BACSU Hypothetical protein yrkQ 32 3.0
sp|Q895H2|MUTS_CLOTE DNA mismatch repair protein mutS 32 3.0
sp|P35892|DNAA_SPIAP Chromosomal replication initiator prot... 31 4.0
>sp|Q8M9X3|CEMA_CHAGL Chloroplast envelope membrane protein
Length = 472
Score = 36.6 bits (83), Expect = 0.095
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
Frame = -2
Query: 847 IDLIKGRLKEILLTLKTDEKIYRFISNLVDVLKNDLNIWKSIENIKTIFNELEDVYVSIS 668
++L K ++ ++++ ++KI F+SN VD+ +N+ +I+ IF+ D S S
Sbjct: 71 LNLFKYKIIKLVINFIGEDKISNFLSNHVDIKNEYVNL-----SIEKIFSSNSDFRKSQS 125
Query: 667 SGRSDKVVIESLNNIIENI---FMKYVEEVEIQITKWISN--------KDFDLYQLN 530
S +V++ + +N F+KY + E Q+ W+ KDF LY +
Sbjct: 126 ESNSKNLVLKKNLDTNKNFHFDFLKYKIKYERQLA-WVEAVLEDLKIWKDFYLYNFD 181
>sp|Q57789|Y343_METJA Hypothetical protein MJ0343
Length = 849
Score = 33.9 bits (76), Expect = 0.61
Identities = 30/109 (27%), Positives = 53/109 (48%)
Frame = -2
Query: 847 IDLIKGRLKEILLTLKTDEKIYRFISNLVDVLKNDLNIWKSIENIKTIFNELEDVYVSIS 668
+D +K E L L D+K R ++ +K+ L I +I + +EL++V
Sbjct: 1 MDCMKKLKVEGTLELNLDDKDVRKNLKSLEKIKSKLEIESNINAVIKQLDELKNV----- 55
Query: 667 SGRSDKVVIESLNNIIENIFMKYVEEVEIQITKWISNKDFDLYQLNAIL 521
K +E +NI N+ ++ +EE+E +K N D+DL +L + L
Sbjct: 56 -----KSEVEFKSNI--NMIIRELEEIEADASKMNINFDYDLSKLKSEL 97
>sp|Q58899|YF04_METJA Putative UDP-N-acetylglucosamine 2-epimerase
(UDP-GlcNAc-2-epimerase)
Length = 366
Score = 33.5 bits (75), Expect = 0.80
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Frame = -2
Query: 796 DEKIYRFISNLVDVLKNDLNIWKSIENIKTIFNE--LEDVYVSISSGRSDKV-VIESLNN 626
+ KI+ + +VD +L I + EN++ FN ++D Y ++ R++ V E L N
Sbjct: 161 ENKIFVVGNTIVDATLQNLKIAEKNENVRAFFNSVVIDDDYFLLTLHRAENVDNKERLKN 220
Query: 625 IIENIF 608
I+E IF
Sbjct: 221 IVEGIF 226
>sp|Q8K987|PPID_BUCAP Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
Length = 621
Score = 33.1 bits (74), Expect = 1.0
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Frame = -2
Query: 874 IYQLINLERIDLIKGRLKEILLTLKTDEKIYRFISNLVDVLKNDLNIWKSIENIKTIF-- 701
+ +L ++ ++ K +LK+IL LK + N++ ++ + NI IF
Sbjct: 487 VNKLKYIKAVEKTKNKLKKILFQLKIGNEHILKKENIIFEEYETVSRYDKNPNISVIFAM 546
Query: 700 ---NELEDVYVSISSGRS-------DKVVIESLNNIIENIFMKYVEEVEIQIT 572
E ++VY + DKV E +N E I +KY+E+ I +T
Sbjct: 547 PHPKEEKNVYTMYQNKNKNFVIALLDKVYNEKFSNEEEKIIIKYLEKNNIDVT 599
>sp|P24465|C71A1_PERAE Cytochrome P450 71A1 (CYPLXXIA1) (ARP-2)
Length = 471
Score = 32.7 bits (73), Expect = 1.4
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
Frame = -2
Query: 769 NLVDVLKNDLNIWK-SIENIKTIFNELEDVYVSISSGRSDKVVIE---SLNNIIEN--IF 608
+LVDVL L++ K S + N L+ V + + SG +D + ++ +I++ +
Sbjct: 271 DLVDVL---LHLQKDSSLGVHLNRNNLKAVILDMFSGGTDTTAVTLEWAMAELIKHPDVM 327
Query: 607 MKYVEEVEIQITKWISNKDFDLYQLNAILLCFTQLLDIKSYEPILYPMAHLVDILLKKYN 428
K +EV + K ++ DL+QL+ + L + L + P+L P D++++ Y+
Sbjct: 328 EKAQQEVRRVVGKKAKVEEEDLHQLHYLKLIIKETLRLHPVAPLLVpreSTRDVVIRGYH 387
>sp|Q92908|GATA6_HUMAN Transcription factor GATA-6 (GATA-binding factor 6)
Length = 449
Score = 25.4 bits (54), Expect(2) = 2.6
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 91 TFHNHHIHHH 120
T+H+HH HHH
Sbjct: 176 TYHHHHHHHH 185
Score = 25.0 bits (53), Expect(2) = 2.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 97 HNHHIHHHP 123
H+HH HHHP
Sbjct: 180 HHHHHHHHP 188
>sp|Q59U11|GRC3_CANAL Protein GRC3
Length = 686
Score = 31.6 bits (70), Expect = 3.0
Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 2/193 (1%)
Frame = -2
Query: 763 VDVLKNDLNIWKSIENIKTIFNELEDVYVSISSGRSDKVVIESLNNIIE-NIFMKYVEEV 587
V ++K + N + IENI +++E + ++ SG+ N+ E ++F Y ++
Sbjct: 180 VSIIKLE-NSFSGIENI----SQIEPAFKNLISGQP---------NVEEPSLFKNYSFDI 225
Query: 586 EIQITKWISNKDFDLYQLNAILLCFTQLLDIKSYEPILYPMAHLVDILLKKYNNCVPLQQ 407
+ T D + Y +N + L +KS + P ++ I K +
Sbjct: 226 ILTETNGGYGLDINSYWINELNL-------LKSNKDDPTPKIIMI-IGNKNTGKSTFCKS 277
Query: 406 LIVELILHINHRLVNYLAVIPGNSVSKGLKESIGIYTAVRSNIVQLNYTNPEIITKALNI 227
LI EL+L +R V+YL + PG S E Y S IVQ + + K NI
Sbjct: 278 LINELLLTNPNRPVSYLEIDPGQS------EYSTPYALSLSEIVQAQFGLVALPHKNNNI 331
Query: 226 LEHR-SRFFGLTA 191
++ R +FG T+
Sbjct: 332 VKSRVEHYFGFTS 344
>sp|P54444|YRKQ_BACSU Hypothetical protein yrkQ
Length = 432
Score = 31.6 bits (70), Expect = 3.0
Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 9/210 (4%)
Frame = -2
Query: 853 ERIDLIKGRLKEILLTLKTDEKIYRFISNLVDVLKNDLNIWKSIENIKTIFNELEDVYVS 674
+ I +++G + +T+K +++ ++ D+ K L+ K+IE ++ E +
Sbjct: 178 QEIHILEGGELDYEMTIKGHDELAMIAKSIEDLRKAFLDKLKAIEELQA---ESRSLVTE 234
Query: 673 ISSGRSDKVVIESLNNIIENIFMKYVEEVEIQITKWISNKDFDLYQLNAILLCFTQLLDI 494
+S L ++I N+ E E +K D Y NA + + L +
Sbjct: 235 MSHDMRTP-----LTSLIMNLEFAKKEGGEAGASK-------DRYVANA----YGKALQL 278
Query: 493 KSYEPILYPMAHLVDILLKKYN---NCVPLQQLIVELI------LHINHRLVNYLAVIPG 341
KS L+ +L K+Y V ++++I +LI LH H V+ +P
Sbjct: 279 KSLSDNLFAYF----LLNKEYEADLETVAVKEVIYDLISDQIAILHQEHFRVHISGELPE 334
Query: 340 NSVSKGLKESIGIYTAVRSNIVQLNYTNPE 251
++ L+E ++ V SN+ L Y +PE
Sbjct: 335 TYINVNLEELGRVFDNVMSNL--LKYADPE 362
>sp|Q895H2|MUTS_CLOTE DNA mismatch repair protein mutS
Length = 881
Score = 31.6 bits (70), Expect = 3.0
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 35/138 (25%)
Frame = -2
Query: 865 LINLERIDLIKGRLKEILLTLKTDEKIYRFISNLVDV-------------LKNDLNIWKS 725
LIN E+ID ++E++L + E + + ++ D+ K L++ S
Sbjct: 307 LINKEKIDKRLNAVEELVLNISLHEDLKDALKDIYDIQRIVGKISSKNVNAKELLSLKNS 366
Query: 724 IENIKTI------------------FNELEDVYVSISSGRSDKVVIESLN-NIIENIFMK 602
IE + I +EL+D+Y + S D I + N+I+N F K
Sbjct: 367 IEKLPYIKDILSKLEADLFKDMLSNLDELKDIYELLESSIMDNPPITIKDGNLIKNGFNK 426
Query: 601 YVEEVEIQIT---KWISN 557
++E+ + + +WI+N
Sbjct: 427 EIDELRMAKSHGKEWIAN 444
>sp|P35892|DNAA_SPIAP Chromosomal replication initiator protein dnaA
Length = 263
Score = 31.2 bits (69), Expect = 4.0
Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 5/183 (2%)
Frame = -2
Query: 778 FISNLVDVLKNDLNIWKSIENIKTIFNELE-----DVYVSISSGRSDKVVIESLNNIIEN 614
F +VD L++ +K IE+ K ++++ D+ +SG+++++ N IEN
Sbjct: 34 FRKEIVDSLQDG---FKEIESTKEKLSKIDVLLIDDIQFLANSGKTNEIFFNLFNFFIEN 90
Query: 613 IFMKYVEEVEIQITKWISNKDFDLYQLNAILLCFTQLLDIKSYEPILYPMAHLVDILLKK 434
K + + + ++ D ++ F+Q L++K P + ++VD K
Sbjct: 91 --NKQIVLTSDKFPEQLNGFD------KRLVSRFSQGLNVKVETPDIITAINIVDYKAKI 142
Query: 433 YNNCVPLQQLIVELILHINHRLVNYLAVIPGNSVSKGLKESIGIYTAVRSNIVQLNYTNP 254
N L+++ Y+A G+ V K GI + +I+Q N P
Sbjct: 143 VN-------------LNLSEESKKYIASFFGSDVRK----IEGIINKIEFSIIQDNSAAP 185
Query: 253 EII 245
+II
Sbjct: 186 KII 188
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,415,828
Number of Sequences: 369166
Number of extensions: 1754565
Number of successful extensions: 5966
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5849
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)