Planaria EST Database


DrC_01244

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01244
         (878 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8M9X3|CEMA_CHAGL  Chloroplast envelope membrane protein        37   0.095
sp|Q57789|Y343_METJA  Hypothetical protein MJ0343                  34   0.61 
sp|Q58899|YF04_METJA  Putative UDP-N-acetylglucosamine 2-epi...    33   0.80 
sp|Q8K987|PPID_BUCAP  Peptidyl-prolyl cis-trans isomerase D ...    33   1.0  
sp|P24465|C71A1_PERAE  Cytochrome P450 71A1 (CYPLXXIA1) (ARP-2)    33   1.4  
sp|Q92908|GATA6_HUMAN  Transcription factor GATA-6 (GATA-bin...    25   2.6  
sp|Q59U11|GRC3_CANAL  Protein GRC3                                 32   3.0  
sp|P54444|YRKQ_BACSU  Hypothetical protein yrkQ                    32   3.0  
sp|Q895H2|MUTS_CLOTE  DNA mismatch repair protein mutS             32   3.0  
sp|P35892|DNAA_SPIAP  Chromosomal replication initiator prot...    31   4.0  
>sp|Q8M9X3|CEMA_CHAGL Chloroplast envelope membrane protein
          Length = 472

 Score = 36.6 bits (83), Expect = 0.095
 Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 11/117 (9%)
 Frame = -2

Query: 847 IDLIKGRLKEILLTLKTDEKIYRFISNLVDVLKNDLNIWKSIENIKTIFNELEDVYVSIS 668
           ++L K ++ ++++    ++KI  F+SN VD+    +N+     +I+ IF+   D   S S
Sbjct: 71  LNLFKYKIIKLVINFIGEDKISNFLSNHVDIKNEYVNL-----SIEKIFSSNSDFRKSQS 125

Query: 667 SGRSDKVVIESLNNIIENI---FMKYVEEVEIQITKWISN--------KDFDLYQLN 530
              S  +V++   +  +N    F+KY  + E Q+  W+          KDF LY  +
Sbjct: 126 ESNSKNLVLKKNLDTNKNFHFDFLKYKIKYERQLA-WVEAVLEDLKIWKDFYLYNFD 181
>sp|Q57789|Y343_METJA Hypothetical protein MJ0343
          Length = 849

 Score = 33.9 bits (76), Expect = 0.61
 Identities = 30/109 (27%), Positives = 53/109 (48%)
 Frame = -2

Query: 847 IDLIKGRLKEILLTLKTDEKIYRFISNLVDVLKNDLNIWKSIENIKTIFNELEDVYVSIS 668
           +D +K    E  L L  D+K  R     ++ +K+ L I  +I  +    +EL++V     
Sbjct: 1   MDCMKKLKVEGTLELNLDDKDVRKNLKSLEKIKSKLEIESNINAVIKQLDELKNV----- 55

Query: 667 SGRSDKVVIESLNNIIENIFMKYVEEVEIQITKWISNKDFDLYQLNAIL 521
                K  +E  +NI  N+ ++ +EE+E   +K   N D+DL +L + L
Sbjct: 56  -----KSEVEFKSNI--NMIIRELEEIEADASKMNINFDYDLSKLKSEL 97
>sp|Q58899|YF04_METJA Putative UDP-N-acetylglucosamine 2-epimerase
           (UDP-GlcNAc-2-epimerase)
          Length = 366

 Score = 33.5 bits (75), Expect = 0.80
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = -2

Query: 796 DEKIYRFISNLVDVLKNDLNIWKSIENIKTIFNE--LEDVYVSISSGRSDKV-VIESLNN 626
           + KI+   + +VD    +L I +  EN++  FN   ++D Y  ++  R++ V   E L N
Sbjct: 161 ENKIFVVGNTIVDATLQNLKIAEKNENVRAFFNSVVIDDDYFLLTLHRAENVDNKERLKN 220

Query: 625 IIENIF 608
           I+E IF
Sbjct: 221 IVEGIF 226
>sp|Q8K987|PPID_BUCAP Peptidyl-prolyl cis-trans isomerase D (PPIase D) (Rotamase D)
          Length = 621

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
 Frame = -2

Query: 874 IYQLINLERIDLIKGRLKEILLTLKTDEKIYRFISNLVDVLKNDLNIWKSIENIKTIF-- 701
           + +L  ++ ++  K +LK+IL  LK   +      N++      ++ +    NI  IF  
Sbjct: 487 VNKLKYIKAVEKTKNKLKKILFQLKIGNEHILKKENIIFEEYETVSRYDKNPNISVIFAM 546

Query: 700 ---NELEDVYVSISSGRS-------DKVVIESLNNIIENIFMKYVEEVEIQIT 572
               E ++VY    +          DKV  E  +N  E I +KY+E+  I +T
Sbjct: 547 PHPKEEKNVYTMYQNKNKNFVIALLDKVYNEKFSNEEEKIIIKYLEKNNIDVT 599
>sp|P24465|C71A1_PERAE Cytochrome P450 71A1 (CYPLXXIA1) (ARP-2)
          Length = 471

 Score = 32.7 bits (73), Expect = 1.4
 Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 6/120 (5%)
 Frame = -2

Query: 769 NLVDVLKNDLNIWK-SIENIKTIFNELEDVYVSISSGRSDKVVIE---SLNNIIEN--IF 608
           +LVDVL   L++ K S   +    N L+ V + + SG +D   +    ++  +I++  + 
Sbjct: 271 DLVDVL---LHLQKDSSLGVHLNRNNLKAVILDMFSGGTDTTAVTLEWAMAELIKHPDVM 327

Query: 607 MKYVEEVEIQITKWISNKDFDLYQLNAILLCFTQLLDIKSYEPILYPMAHLVDILLKKYN 428
            K  +EV   + K    ++ DL+QL+ + L   + L +    P+L P     D++++ Y+
Sbjct: 328 EKAQQEVRRVVGKKAKVEEEDLHQLHYLKLIIKETLRLHPVAPLLVpreSTRDVVIRGYH 387
>sp|Q92908|GATA6_HUMAN Transcription factor GATA-6 (GATA-binding factor 6)
          Length = 449

 Score = 25.4 bits (54), Expect(2) = 2.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 91  TFHNHHIHHH 120
           T+H+HH HHH
Sbjct: 176 TYHHHHHHHH 185

 Score = 25.0 bits (53), Expect(2) = 2.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 97  HNHHIHHHP 123
           H+HH HHHP
Sbjct: 180 HHHHHHHHP 188
>sp|Q59U11|GRC3_CANAL Protein GRC3
          Length = 686

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 2/193 (1%)
 Frame = -2

Query: 763 VDVLKNDLNIWKSIENIKTIFNELEDVYVSISSGRSDKVVIESLNNIIE-NIFMKYVEEV 587
           V ++K + N +  IENI    +++E  + ++ SG+          N+ E ++F  Y  ++
Sbjct: 180 VSIIKLE-NSFSGIENI----SQIEPAFKNLISGQP---------NVEEPSLFKNYSFDI 225

Query: 586 EIQITKWISNKDFDLYQLNAILLCFTQLLDIKSYEPILYPMAHLVDILLKKYNNCVPLQQ 407
            +  T      D + Y +N + L       +KS +    P   ++ I  K        + 
Sbjct: 226 ILTETNGGYGLDINSYWINELNL-------LKSNKDDPTPKIIMI-IGNKNTGKSTFCKS 277

Query: 406 LIVELILHINHRLVNYLAVIPGNSVSKGLKESIGIYTAVRSNIVQLNYTNPEIITKALNI 227
           LI EL+L   +R V+YL + PG S      E    Y    S IVQ  +    +  K  NI
Sbjct: 278 LINELLLTNPNRPVSYLEIDPGQS------EYSTPYALSLSEIVQAQFGLVALPHKNNNI 331

Query: 226 LEHR-SRFFGLTA 191
           ++ R   +FG T+
Sbjct: 332 VKSRVEHYFGFTS 344
>sp|P54444|YRKQ_BACSU Hypothetical protein yrkQ
          Length = 432

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 47/210 (22%), Positives = 90/210 (42%), Gaps = 9/210 (4%)
 Frame = -2

Query: 853 ERIDLIKGRLKEILLTLKTDEKIYRFISNLVDVLKNDLNIWKSIENIKTIFNELEDVYVS 674
           + I +++G   +  +T+K  +++     ++ D+ K  L+  K+IE ++    E   +   
Sbjct: 178 QEIHILEGGELDYEMTIKGHDELAMIAKSIEDLRKAFLDKLKAIEELQA---ESRSLVTE 234

Query: 673 ISSGRSDKVVIESLNNIIENIFMKYVEEVEIQITKWISNKDFDLYQLNAILLCFTQLLDI 494
           +S           L ++I N+     E  E   +K       D Y  NA    + + L +
Sbjct: 235 MSHDMRTP-----LTSLIMNLEFAKKEGGEAGASK-------DRYVANA----YGKALQL 278

Query: 493 KSYEPILYPMAHLVDILLKKYN---NCVPLQQLIVELI------LHINHRLVNYLAVIPG 341
           KS    L+       +L K+Y      V ++++I +LI      LH  H  V+    +P 
Sbjct: 279 KSLSDNLFAYF----LLNKEYEADLETVAVKEVIYDLISDQIAILHQEHFRVHISGELPE 334

Query: 340 NSVSKGLKESIGIYTAVRSNIVQLNYTNPE 251
             ++  L+E   ++  V SN+  L Y +PE
Sbjct: 335 TYINVNLEELGRVFDNVMSNL--LKYADPE 362
>sp|Q895H2|MUTS_CLOTE DNA mismatch repair protein mutS
          Length = 881

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 35/138 (25%)
 Frame = -2

Query: 865 LINLERIDLIKGRLKEILLTLKTDEKIYRFISNLVDV-------------LKNDLNIWKS 725
           LIN E+ID     ++E++L +   E +   + ++ D+              K  L++  S
Sbjct: 307 LINKEKIDKRLNAVEELVLNISLHEDLKDALKDIYDIQRIVGKISSKNVNAKELLSLKNS 366

Query: 724 IENIKTI------------------FNELEDVYVSISSGRSDKVVIESLN-NIIENIFMK 602
           IE +  I                   +EL+D+Y  + S   D   I   + N+I+N F K
Sbjct: 367 IEKLPYIKDILSKLEADLFKDMLSNLDELKDIYELLESSIMDNPPITIKDGNLIKNGFNK 426

Query: 601 YVEEVEIQIT---KWISN 557
            ++E+ +  +   +WI+N
Sbjct: 427 EIDELRMAKSHGKEWIAN 444
>sp|P35892|DNAA_SPIAP Chromosomal replication initiator protein dnaA
          Length = 263

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 40/183 (21%), Positives = 78/183 (42%), Gaps = 5/183 (2%)
 Frame = -2

Query: 778 FISNLVDVLKNDLNIWKSIENIKTIFNELE-----DVYVSISSGRSDKVVIESLNNIIEN 614
           F   +VD L++    +K IE+ K   ++++     D+    +SG+++++     N  IEN
Sbjct: 34  FRKEIVDSLQDG---FKEIESTKEKLSKIDVLLIDDIQFLANSGKTNEIFFNLFNFFIEN 90

Query: 613 IFMKYVEEVEIQITKWISNKDFDLYQLNAILLCFTQLLDIKSYEPILYPMAHLVDILLKK 434
              K +     +  + ++  D        ++  F+Q L++K   P +    ++VD   K 
Sbjct: 91  --NKQIVLTSDKFPEQLNGFD------KRLVSRFSQGLNVKVETPDIITAINIVDYKAKI 142

Query: 433 YNNCVPLQQLIVELILHINHRLVNYLAVIPGNSVSKGLKESIGIYTAVRSNIVQLNYTNP 254
            N             L+++     Y+A   G+ V K      GI   +  +I+Q N   P
Sbjct: 143 VN-------------LNLSEESKKYIASFFGSDVRK----IEGIINKIEFSIIQDNSAAP 185

Query: 253 EII 245
           +II
Sbjct: 186 KII 188
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,415,828
Number of Sequences: 369166
Number of extensions: 1754565
Number of successful extensions: 5966
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5849
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8742211660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)