Planaria EST Database


DrC_01236

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01236
         (309 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36220|TBA_TORMA  Tubulin alpha chain (Alpha T6)                71   7e-13
sp|P18288|TBAT_ONCMY  Tubulin alpha chain, testis-specific         71   7e-13
sp|P05214|TBA3_MOUSE  Tubulin alpha-3/alpha-7 chain (Alpha-t...    71   7e-13
sp|P68369|TBA1_MOUSE  Tubulin alpha-1 chain (Alpha-tubulin 1...    71   7e-13
sp|P68361|TBA1_CRIGR  Tubulin alpha-1 chain (Alpha-tubulin 1...    71   7e-13
sp|P41383|TBA2_PATVU  Tubulin alpha-2/alpha-4 chain                71   7e-13
sp|P02552|TBA1_CHICK  Tubulin alpha-1 chain                        71   7e-13
sp|Q8T6A5|TBA1_APLCA  Tubulin alpha-1 chain                        71   7e-13
sp|P02550|TBA_PIG  Tubulin alpha chain                             71   7e-13
sp|P02553|TBA_LYTPI  Tubulin alpha chain                           71   7e-13
>sp|P36220|TBA_TORMA Tubulin alpha chain (Alpha T6)
          Length = 451

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 34/57 (59%), Positives = 37/57 (64%)
 Frame = +2

Query: 23  IVEAWARWDHKYDLMYAKRDFVRWNVREGMEESEFSEARXXXXXXXXXXXXIGIDGV 193
           I EAWAR DHK+DLMYAKR FV W V EGMEE EFSEAR            +G+D V
Sbjct: 384 IAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
          Length = 450

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 34/57 (59%), Positives = 37/57 (64%)
 Frame = +2

Query: 23  IVEAWARWDHKYDLMYAKRDFVRWNVREGMEESEFSEARXXXXXXXXXXXXIGIDGV 193
           I EAWAR DHK+DLMYAKR FV W V EGMEE EFSEAR            +G+D V
Sbjct: 384 IAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
           isotype M-alpha-3/7)
 sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
 sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
          Length = 450

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 34/57 (59%), Positives = 37/57 (64%)
 Frame = +2

Query: 23  IVEAWARWDHKYDLMYAKRDFVRWNVREGMEESEFSEARXXXXXXXXXXXXIGIDGV 193
           I EAWAR DHK+DLMYAKR FV W V EGMEE EFSEAR            +G+D V
Sbjct: 384 IAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
           M-alpha-1)
 sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
 sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
 sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
          Length = 451

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 34/57 (59%), Positives = 37/57 (64%)
 Frame = +2

Query: 23  IVEAWARWDHKYDLMYAKRDFVRWNVREGMEESEFSEARXXXXXXXXXXXXIGIDGV 193
           I EAWAR DHK+DLMYAKR FV W V EGMEE EFSEAR            +G+D V
Sbjct: 384 IAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
 sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
           K-alpha-1)
 sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
           M-alpha-2)
 sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
 sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
          Length = 451

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 34/57 (59%), Positives = 37/57 (64%)
 Frame = +2

Query: 23  IVEAWARWDHKYDLMYAKRDFVRWNVREGMEESEFSEARXXXXXXXXXXXXIGIDGV 193
           I EAWAR DHK+DLMYAKR FV W V EGMEE EFSEAR            +G+D V
Sbjct: 384 IAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
          Length = 452

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 34/57 (59%), Positives = 37/57 (64%)
 Frame = +2

Query: 23  IVEAWARWDHKYDLMYAKRDFVRWNVREGMEESEFSEARXXXXXXXXXXXXIGIDGV 193
           I EAWAR DHK+DLMYAKR FV W V EGMEE EFSEAR            +G+D V
Sbjct: 384 IAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
          Length = 412

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 34/57 (59%), Positives = 37/57 (64%)
 Frame = +2

Query: 23  IVEAWARWDHKYDLMYAKRDFVRWNVREGMEESEFSEARXXXXXXXXXXXXIGIDGV 193
           I EAWAR DHK+DLMYAKR FV W V EGMEE EFSEAR            +G+D V
Sbjct: 345 IAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 401
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
          Length = 451

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 34/57 (59%), Positives = 37/57 (64%)
 Frame = +2

Query: 23  IVEAWARWDHKYDLMYAKRDFVRWNVREGMEESEFSEARXXXXXXXXXXXXIGIDGV 193
           I EAWAR DHK+DLMYAKR FV W V EGMEE EFSEAR            +G+D V
Sbjct: 384 IAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P02550|TBA_PIG Tubulin alpha chain
          Length = 451

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 34/57 (59%), Positives = 37/57 (64%)
 Frame = +2

Query: 23  IVEAWARWDHKYDLMYAKRDFVRWNVREGMEESEFSEARXXXXXXXXXXXXIGIDGV 193
           I EAWAR DHK+DLMYAKR FV W V EGMEE EFSEAR            +G+D V
Sbjct: 384 IAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P02553|TBA_LYTPI Tubulin alpha chain
          Length = 161

 Score = 71.2 bits (173), Expect = 7e-13
 Identities = 34/57 (59%), Positives = 37/57 (64%)
 Frame = +2

Query: 23  IVEAWARWDHKYDLMYAKRDFVRWNVREGMEESEFSEARXXXXXXXXXXXXIGIDGV 193
           I EAWAR DHK+DLMYAKR FV W V EGMEE EFSEAR            +G+D V
Sbjct: 94  IAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 150
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,285,055
Number of Sequences: 369166
Number of extensions: 446531
Number of successful extensions: 1382
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 68,354,980
effective HSP length: 71
effective length of database: 55,238,795
effective search space used: 1712402645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)