Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01235
(626 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23772|GATA3_MOUSE Trans-acting T-cell-specific transcri... 84 2e-16
sp|P23771|GATA3_HUMAN Trans-acting T-cell-specific transcri... 84 2e-16
sp|P23825|GATA3_CHICK GATA-binding factor 3 (GATA-3) (Trans... 84 2e-16
sp|Q9BWX5|GATA5_HUMAN Transcription factor GATA-5 (GATA-bin... 83 5e-16
sp|P97489|GATA5_MOUSE Transcription factor GATA-5 (GATA-bin... 82 9e-16
sp|P91623|GATC_DROME GATA-binding factor-C (Transcription f... 80 3e-15
sp|P28515|ELT1_CAEEL Transcription factor elt-1 80 3e-15
sp|P52168|PNR_DROME GATA-binding factor-A (Transcription fa... 80 3e-15
sp|P43692|GATA5_CHICK Transcription factor GATA-5 (GATA-bin... 80 4e-15
sp|P23773|GATA3_XENLA GATA-binding factor 3 (Transcription ... 80 4e-15
>sp|P23772|GATA3_MOUSE Trans-acting T-cell-specific transcription factor GATA-3
(GATA-binding factor 3)
Length = 443
Score = 84.3 bits (207), Expect = 2e-16
Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Frame = +1
Query: 58 YKRNQINKNLA----RKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKT 225
+K N N+ L R A+R G C+NC+T TTLWRRN++G PVCNACGLYY+LH
Sbjct: 291 HKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 350
Query: 226 HRPPSMXXXXXXXXXXXXXXXQNICMKLME--QDFPIKPELSNSIEQQHMSS 375
+RP +M C K+ + +DFP + + +HMSS
Sbjct: 351 NRPLTMKKEGIQTRNRKMSSKSKKCKKVHDALEDFPKSSSFNPAALSRHMSS 402
Score = 50.1 bits (118), Expect = 5e-06
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +1
Query: 94 KQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
K + G C NC +T LWRR+ G +CNACGLY++++ +RP
Sbjct: 253 KARSSTEGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRP 299
>sp|P23771|GATA3_HUMAN Trans-acting T-cell-specific transcription factor GATA-3
(GATA-binding factor 3)
Length = 443
Score = 84.3 bits (207), Expect = 2e-16
Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Frame = +1
Query: 58 YKRNQINKNLA----RKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKT 225
+K N N+ L R A+R G C+NC+T TTLWRRN++G PVCNACGLYY+LH
Sbjct: 291 HKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 350
Query: 226 HRPPSMXXXXXXXXXXXXXXXQNICMKLME--QDFPIKPELSNSIEQQHMSS 375
+RP +M C K+ + +DFP + + +HMSS
Sbjct: 351 NRPLTMKKEGIQTRNRKMSSKSKKCKKVHDSLEDFPKNSSFNPAALSRHMSS 402
Score = 52.8 bits (125), Expect = 7e-07
Identities = 21/49 (42%), Positives = 31/49 (63%)
Frame = +1
Query: 88 ARKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
+R + TG C NC +T LWRR+ G +CNACGLY++++ +RP
Sbjct: 251 SRPKARSSTGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRP 299
>sp|P23825|GATA3_CHICK GATA-binding factor 3 (GATA-3) (Transcription factor NF-E1C)
Length = 444
Score = 84.3 bits (207), Expect = 2e-16
Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
Frame = +1
Query: 58 YKRNQINKNLA----RKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKT 225
+K N N+ L R A+R G C+NC+T TTLWRRN++G PVCNACGLYY+LH
Sbjct: 292 HKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 351
Query: 226 HRPPSMXXXXXXXXXXXXXXXQNICMKLME--QDFPIKPELSNSIEQQHMSS 375
+RP +M C K+ + +DFP + + +HMSS
Sbjct: 352 NRPLTMKKEGIQTRNRKMSSKSKKCKKVHDNLEDFPKSSSFNPAALSRHMSS 403
Score = 50.1 bits (118), Expect = 5e-06
Identities = 20/47 (42%), Positives = 29/47 (61%)
Frame = +1
Query: 94 KQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
K + G C NC +T LWRR+ G +CNACGLY++++ +RP
Sbjct: 254 KARSSTEGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRP 300
>sp|Q9BWX5|GATA5_HUMAN Transcription factor GATA-5 (GATA-binding factor 5)
Length = 397
Score = 83.2 bits (204), Expect = 5e-16
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Frame = +1
Query: 58 YKRNQINKNLARKQ----TAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKT 225
+K N +N+ L R Q +++R GL C+NC T NTTLWRRNS+G+PVCNACGLY +LH
Sbjct: 217 HKMNGVNRPLVRPQKRLSSSRRAGLCCTNCHTTNTTLWRRNSEGEPVCNACGLYMKLHGV 276
Query: 226 HRPPSM 243
RP +M
Sbjct: 277 PRPLAM 282
Score = 48.9 bits (115), Expect = 1e-05
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +1
Query: 115 GLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
G C NC +T LWRR+ G +CNACGLY++++ +RP
Sbjct: 186 GRECVNCGALSTPLWRRDGTGHYLCNACGLYHKMNGVNRP 225
>sp|P97489|GATA5_MOUSE Transcription factor GATA-5 (GATA-binding factor 5)
Length = 404
Score = 82.4 bits (202), Expect = 9e-16
Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
Frame = +1
Query: 58 YKRNQINKNLARKQ----TAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKT 225
+K N +N+ L R Q +++R+GL CSNC T TTLWRRNS+G+PVCNACGLY +LH
Sbjct: 224 HKMNGVNRPLVRPQKRLSSSRRSGLCCSNCHTATTTLWRRNSEGEPVCNACGLYMKLHGV 283
Query: 226 HRPPSM 243
RP +M
Sbjct: 284 PRPLAM 289
Score = 48.9 bits (115), Expect = 1e-05
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +1
Query: 115 GLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
G C NC +T LWRR+ G +CNACGLY++++ +RP
Sbjct: 193 GRECVNCGALSTPLWRRDGTGHYLCNACGLYHKMNGVNRP 232
>sp|P91623|GATC_DROME GATA-binding factor-C (Transcription factor GATA-C) (dGATA-C)
(Grain protein)
Length = 486
Score = 80.5 bits (197), Expect = 3e-15
Identities = 37/72 (51%), Positives = 46/72 (63%), Gaps = 10/72 (13%)
Frame = +1
Query: 58 YKRNQINKNLAR----------KQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLY 207
YK N N+ L + + AKR G C+NCKT TTLWRRN+ G+PVCNACGLY
Sbjct: 289 YKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLY 348
Query: 208 YRLHKTHRPPSM 243
Y+LH +RP +M
Sbjct: 349 YKLHNVNRPLTM 360
Score = 51.6 bits (122), Expect = 2e-06
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +1
Query: 106 KRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
+ G C NC +T LWRR+ G +CNACGLYY+++ +RP
Sbjct: 255 REEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRP 297
>sp|P28515|ELT1_CAEEL Transcription factor elt-1
Length = 416
Score = 80.5 bits (197), Expect = 3e-15
Identities = 36/66 (54%), Positives = 43/66 (65%)
Frame = +1
Query: 46 LIPPYKRNQINKNLARKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKT 225
L+ P KR Q KRTG+ C NC+T TTLWRRN +G PVCNACGLY++LHK
Sbjct: 254 LVKPKKRQQ--------NAQKRTGIECVNCRTNTTTLWRRNGEGHPVCNACGLYFKLHKV 305
Query: 226 HRPPSM 243
RP +M
Sbjct: 306 ERPITM 311
Score = 50.8 bits (120), Expect = 3e-06
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +1
Query: 124 CSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
C NC NT LWRR+ G +CNACGLY++++ RP
Sbjct: 217 CVNCGVHNTPLWRRDGSGNYLCNACGLYFKMNHHARP 253
>sp|P52168|PNR_DROME GATA-binding factor-A (Transcription factor GATA-A) (dGATA-A)
(Pannier protein)
Length = 540
Score = 80.5 bits (197), Expect = 3e-15
Identities = 33/56 (58%), Positives = 41/56 (73%)
Frame = +1
Query: 76 NKNLARKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRPPSM 243
+K L +R GL C+NC T TTLWRRN+DG+PVCNACGLYY+LH +RP +M
Sbjct: 210 SKRLVSATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPLAM 265
Score = 48.5 bits (114), Expect = 1e-05
Identities = 19/40 (47%), Positives = 27/40 (67%)
Frame = +1
Query: 115 GLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
G C NC +T LWRR+ G +CNACGLY++++ +RP
Sbjct: 166 GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRP 205
>sp|P43692|GATA5_CHICK Transcription factor GATA-5 (GATA-binding factor 5)
Length = 391
Score = 80.1 bits (196), Expect = 4e-15
Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
Frame = +1
Query: 58 YKRNQINKNLA---RKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTH 228
+K N IN+ L R +++R GL C+NC T NTTLWRRN++G+PVCNACGLY +LH
Sbjct: 214 HKMNGINRPLKPQKRLSSSRRAGLCCTNCHTTNTTLWRRNAEGEPVCNACGLYMKLHGVP 273
Query: 229 RPPSM 243
RP +M
Sbjct: 274 RPLAM 278
Score = 47.8 bits (112), Expect = 2e-05
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +1
Query: 115 GLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
G C NC +T LWR++ G +CNACGLY++++ +RP
Sbjct: 183 GRECVNCGAMSTPLWRKDGTGHYLCNACGLYHKMNGINRP 222
>sp|P23773|GATA3_XENLA GATA-binding factor 3 (Transcription factor xGATA-3)
Length = 435
Score = 80.1 bits (196), Expect = 4e-15
Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Frame = +1
Query: 58 YKRNQINKNLA----RKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKT 225
+K N N+ L R A+R G C+NC+T TTLWRRN++G PVCNACGLYY+LH
Sbjct: 284 HKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 343
Query: 226 HRPPSMXXXXXXXXXXXXXXXQNICMKLME--QDFPIKPELSNSIEQQHMSS 375
+RP +M K + +D+P S + +HMSS
Sbjct: 344 NRPLTMKKEGIQTRNRKMSSKSKKSKKFHDSLEDYPKSSSFSPAALSRHMSS 395
Score = 51.2 bits (121), Expect = 2e-06
Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +1
Query: 88 ARKQTAKRT-GLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
AR +T T G C NC +T LWRR+ G +CNACGLY++++ +RP
Sbjct: 243 ARPKTRSSTEGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRP 292
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,728,952
Number of Sequences: 369166
Number of extensions: 1318544
Number of successful extensions: 3087
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3072
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)