Planaria EST Database


DrC_01235

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01235
         (626 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23772|GATA3_MOUSE  Trans-acting T-cell-specific transcri...    84   2e-16
sp|P23771|GATA3_HUMAN  Trans-acting T-cell-specific transcri...    84   2e-16
sp|P23825|GATA3_CHICK  GATA-binding factor 3 (GATA-3) (Trans...    84   2e-16
sp|Q9BWX5|GATA5_HUMAN  Transcription factor GATA-5 (GATA-bin...    83   5e-16
sp|P97489|GATA5_MOUSE  Transcription factor GATA-5 (GATA-bin...    82   9e-16
sp|P91623|GATC_DROME  GATA-binding factor-C (Transcription f...    80   3e-15
sp|P28515|ELT1_CAEEL  Transcription factor elt-1                   80   3e-15
sp|P52168|PNR_DROME  GATA-binding factor-A (Transcription fa...    80   3e-15
sp|P43692|GATA5_CHICK  Transcription factor GATA-5 (GATA-bin...    80   4e-15
sp|P23773|GATA3_XENLA  GATA-binding factor 3 (Transcription ...    80   4e-15
>sp|P23772|GATA3_MOUSE Trans-acting T-cell-specific transcription factor GATA-3
           (GATA-binding factor 3)
          Length = 443

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
 Frame = +1

Query: 58  YKRNQINKNLA----RKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKT 225
           +K N  N+ L     R   A+R G  C+NC+T  TTLWRRN++G PVCNACGLYY+LH  
Sbjct: 291 HKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 350

Query: 226 HRPPSMXXXXXXXXXXXXXXXQNICMKLME--QDFPIKPELSNSIEQQHMSS 375
           +RP +M                  C K+ +  +DFP     + +   +HMSS
Sbjct: 351 NRPLTMKKEGIQTRNRKMSSKSKKCKKVHDALEDFPKSSSFNPAALSRHMSS 402

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = +1

Query: 94  KQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
           K  +   G  C NC   +T LWRR+  G  +CNACGLY++++  +RP
Sbjct: 253 KARSSTEGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRP 299
>sp|P23771|GATA3_HUMAN Trans-acting T-cell-specific transcription factor GATA-3
           (GATA-binding factor 3)
          Length = 443

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
 Frame = +1

Query: 58  YKRNQINKNLA----RKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKT 225
           +K N  N+ L     R   A+R G  C+NC+T  TTLWRRN++G PVCNACGLYY+LH  
Sbjct: 291 HKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 350

Query: 226 HRPPSMXXXXXXXXXXXXXXXQNICMKLME--QDFPIKPELSNSIEQQHMSS 375
           +RP +M                  C K+ +  +DFP     + +   +HMSS
Sbjct: 351 NRPLTMKKEGIQTRNRKMSSKSKKCKKVHDSLEDFPKNSSFNPAALSRHMSS 402

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 21/49 (42%), Positives = 31/49 (63%)
 Frame = +1

Query: 88  ARKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
           +R +    TG  C NC   +T LWRR+  G  +CNACGLY++++  +RP
Sbjct: 251 SRPKARSSTGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRP 299
>sp|P23825|GATA3_CHICK GATA-binding factor 3 (GATA-3) (Transcription factor NF-E1C)
          Length = 444

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 44/112 (39%), Positives = 60/112 (53%), Gaps = 6/112 (5%)
 Frame = +1

Query: 58  YKRNQINKNLA----RKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKT 225
           +K N  N+ L     R   A+R G  C+NC+T  TTLWRRN++G PVCNACGLYY+LH  
Sbjct: 292 HKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 351

Query: 226 HRPPSMXXXXXXXXXXXXXXXQNICMKLME--QDFPIKPELSNSIEQQHMSS 375
           +RP +M                  C K+ +  +DFP     + +   +HMSS
Sbjct: 352 NRPLTMKKEGIQTRNRKMSSKSKKCKKVHDNLEDFPKSSSFNPAALSRHMSS 403

 Score = 50.1 bits (118), Expect = 5e-06
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = +1

Query: 94  KQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
           K  +   G  C NC   +T LWRR+  G  +CNACGLY++++  +RP
Sbjct: 254 KARSSTEGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRP 300
>sp|Q9BWX5|GATA5_HUMAN Transcription factor GATA-5 (GATA-binding factor 5)
          Length = 397

 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
 Frame = +1

Query: 58  YKRNQINKNLARKQ----TAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKT 225
           +K N +N+ L R Q    +++R GL C+NC T NTTLWRRNS+G+PVCNACGLY +LH  
Sbjct: 217 HKMNGVNRPLVRPQKRLSSSRRAGLCCTNCHTTNTTLWRRNSEGEPVCNACGLYMKLHGV 276

Query: 226 HRPPSM 243
            RP +M
Sbjct: 277 PRPLAM 282

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = +1

Query: 115 GLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
           G  C NC   +T LWRR+  G  +CNACGLY++++  +RP
Sbjct: 186 GRECVNCGALSTPLWRRDGTGHYLCNACGLYHKMNGVNRP 225
>sp|P97489|GATA5_MOUSE Transcription factor GATA-5 (GATA-binding factor 5)
          Length = 404

 Score = 82.4 bits (202), Expect = 9e-16
 Identities = 37/66 (56%), Positives = 48/66 (72%), Gaps = 4/66 (6%)
 Frame = +1

Query: 58  YKRNQINKNLARKQ----TAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKT 225
           +K N +N+ L R Q    +++R+GL CSNC T  TTLWRRNS+G+PVCNACGLY +LH  
Sbjct: 224 HKMNGVNRPLVRPQKRLSSSRRSGLCCSNCHTATTTLWRRNSEGEPVCNACGLYMKLHGV 283

Query: 226 HRPPSM 243
            RP +M
Sbjct: 284 PRPLAM 289

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = +1

Query: 115 GLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
           G  C NC   +T LWRR+  G  +CNACGLY++++  +RP
Sbjct: 193 GRECVNCGALSTPLWRRDGTGHYLCNACGLYHKMNGVNRP 232
>sp|P91623|GATC_DROME GATA-binding factor-C (Transcription factor GATA-C) (dGATA-C)
           (Grain protein)
          Length = 486

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 37/72 (51%), Positives = 46/72 (63%), Gaps = 10/72 (13%)
 Frame = +1

Query: 58  YKRNQINKNLAR----------KQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLY 207
           YK N  N+ L +          +  AKR G  C+NCKT  TTLWRRN+ G+PVCNACGLY
Sbjct: 289 YKMNGQNRPLIKPKRRLTLQSLQSAAKRAGTSCANCKTTTTTLWRRNASGEPVCNACGLY 348

Query: 208 YRLHKTHRPPSM 243
           Y+LH  +RP +M
Sbjct: 349 YKLHNVNRPLTM 360

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 20/43 (46%), Positives = 28/43 (65%)
 Frame = +1

Query: 106 KRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
           +  G  C NC   +T LWRR+  G  +CNACGLYY+++  +RP
Sbjct: 255 REEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRP 297
>sp|P28515|ELT1_CAEEL Transcription factor elt-1
          Length = 416

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 36/66 (54%), Positives = 43/66 (65%)
 Frame = +1

Query: 46  LIPPYKRNQINKNLARKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKT 225
           L+ P KR Q           KRTG+ C NC+T  TTLWRRN +G PVCNACGLY++LHK 
Sbjct: 254 LVKPKKRQQ--------NAQKRTGIECVNCRTNTTTLWRRNGEGHPVCNACGLYFKLHKV 305

Query: 226 HRPPSM 243
            RP +M
Sbjct: 306 ERPITM 311

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 19/37 (51%), Positives = 25/37 (67%)
 Frame = +1

Query: 124 CSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
           C NC   NT LWRR+  G  +CNACGLY++++   RP
Sbjct: 217 CVNCGVHNTPLWRRDGSGNYLCNACGLYFKMNHHARP 253
>sp|P52168|PNR_DROME GATA-binding factor-A (Transcription factor GATA-A) (dGATA-A)
           (Pannier protein)
          Length = 540

 Score = 80.5 bits (197), Expect = 3e-15
 Identities = 33/56 (58%), Positives = 41/56 (73%)
 Frame = +1

Query: 76  NKNLARKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRPPSM 243
           +K L      +R GL C+NC T  TTLWRRN+DG+PVCNACGLYY+LH  +RP +M
Sbjct: 210 SKRLVSATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGLYYKLHGVNRPLAM 265

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 19/40 (47%), Positives = 27/40 (67%)
 Frame = +1

Query: 115 GLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
           G  C NC   +T LWRR+  G  +CNACGLY++++  +RP
Sbjct: 166 GRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGMNRP 205
>sp|P43692|GATA5_CHICK Transcription factor GATA-5 (GATA-binding factor 5)
          Length = 391

 Score = 80.1 bits (196), Expect = 4e-15
 Identities = 36/65 (55%), Positives = 47/65 (72%), Gaps = 3/65 (4%)
 Frame = +1

Query: 58  YKRNQINKNLA---RKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTH 228
           +K N IN+ L    R  +++R GL C+NC T NTTLWRRN++G+PVCNACGLY +LH   
Sbjct: 214 HKMNGINRPLKPQKRLSSSRRAGLCCTNCHTTNTTLWRRNAEGEPVCNACGLYMKLHGVP 273

Query: 229 RPPSM 243
           RP +M
Sbjct: 274 RPLAM 278

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 18/40 (45%), Positives = 27/40 (67%)
 Frame = +1

Query: 115 GLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
           G  C NC   +T LWR++  G  +CNACGLY++++  +RP
Sbjct: 183 GRECVNCGAMSTPLWRKDGTGHYLCNACGLYHKMNGINRP 222
>sp|P23773|GATA3_XENLA GATA-binding factor 3 (Transcription factor xGATA-3)
          Length = 435

 Score = 80.1 bits (196), Expect = 4e-15
 Identities = 43/112 (38%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
 Frame = +1

Query: 58  YKRNQINKNLA----RKQTAKRTGLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKT 225
           +K N  N+ L     R   A+R G  C+NC+T  TTLWRRN++G PVCNACGLYY+LH  
Sbjct: 284 HKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 343

Query: 226 HRPPSMXXXXXXXXXXXXXXXQNICMKLME--QDFPIKPELSNSIEQQHMSS 375
           +RP +M                    K  +  +D+P     S +   +HMSS
Sbjct: 344 NRPLTMKKEGIQTRNRKMSSKSKKSKKFHDSLEDYPKSSSFSPAALSRHMSS 395

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
 Frame = +1

Query: 88  ARKQTAKRT-GLLCSNCKTENTTLWRRNSDGQPVCNACGLYYRLHKTHRP 234
           AR +T   T G  C NC   +T LWRR+  G  +CNACGLY++++  +RP
Sbjct: 243 ARPKTRSSTEGRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRP 292
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,728,952
Number of Sequences: 369166
Number of extensions: 1318544
Number of successful extensions: 3087
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3072
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)