Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01225
(494 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P56181|NUOM_HUMAN NADH-ubiquinone oxidoreductase 9 kDa s... 35 0.097
sp|Q09175|KRP1_SCHPO Dibasic processing endoprotease precur... 33 0.28
sp|P15624|SYFB_YEAST Phenylalanyl-tRNA synthetase beta chai... 32 0.82
sp|P25712|NUOM_BOVIN NADH-ubiquinone oxidoreductase 9 kDa s... 32 1.1
sp|Q9UBE0|ULE1A_HUMAN Ubiquitin-like 1-activating enzyme E1... 30 3.1
sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1 30 3.1
sp|P19151|ADEN_ADEB7 Adenain (Endoprotease) (Late L3 23 kDa... 29 5.3
sp|P77989|BGAL_THEET Beta-galactosidase (Lactase) 29 5.3
sp|Q8XJK1|ENGA_CLOPE GTP-binding protein engA 29 6.9
sp|P34508|CRN6_CAEEL Cell death-related nuclease 6 precursor 28 9.0
>sp|P56181|NUOM_HUMAN NADH-ubiquinone oxidoreductase 9 kDa subunit, mitochondrial
precursor (Complex I-9KD) (CI-9KD)
Length = 108
Score = 35.0 bits (79), Expect = 0.097
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +1
Query: 49 IAKESTVNKDGGDGKNKDITSDVKTPVIKKEVFDNTSYKNDEYFKYETMSYYNLEAILKP 228
++ ES ++ G +K + K + E FDNT+YKN ++ Y T ++ +L L
Sbjct: 34 LSAESGKSEKGQPQNSKKQSPPKKPAPVPAEPFDNTTYKNLQHHDYSTYTFLDLNLELSK 93
Query: 229 NRVHSIKSSRK 261
R+ S R+
Sbjct: 94 FRMPQPSSGRE 104
>sp|Q09175|KRP1_SCHPO Dibasic processing endoprotease precursor (KEX2-related protease)
Length = 709
Score = 33.5 bits (75), Expect = 0.28
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +1
Query: 46 LIAKESTVNKDGGDGKNKDITSDVKTPVIKKEVFDNTSYKNDEYFKYETMSYYN----LE 213
LIA E VNK G N+ IT V + K++ + +++K E+ +N LE
Sbjct: 455 LIAPEINVNKSFGSVNNETITEMVSEFTVTKDMIEKSNFKRLEHVTVRVCIPFNRRGALE 514
Query: 214 AILK-PNRVHSIKSSRK 261
+L+ P+ + SI +S +
Sbjct: 515 ILLESPSGIRSILASER 531
>sp|P15624|SYFB_YEAST Phenylalanyl-tRNA synthetase beta chain (Phenylalanine--tRNA ligase
beta chain) (PheRS)
Length = 595
Score = 32.0 bits (71), Expect = 0.82
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Frame = +1
Query: 10 NCSKSDDISLQNLIAKESTVNKDGGDGKNKDITSDVKTPVIKKEVFDNTSYKNDEYFKY- 186
N K + +S N IAK +N K DI + EV T +DE FK+
Sbjct: 367 NLPKGEKLSNANFIAKPLPIN------KVSDIFRVASSQATWVEVLPLTLCSHDENFKFL 420
Query: 187 ---------------ETMSYYNLEAILKPNRVHSIKSSRKYSYP 273
+T+ Y + L P + ++K +RK+S P
Sbjct: 421 RQSDNGDLAVKLANPKTLEYQVVRTTLLPGILKTVKENRKHSLP 464
>sp|P25712|NUOM_BOVIN NADH-ubiquinone oxidoreductase 9 kDa subunit, mitochondrial
precursor (Complex I-9KD) (CI-9KD)
Length = 109
Score = 31.6 bits (70), Expect = 1.1
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 49 IAKESTVNKDGGDGKNKDITSDVKTPV--IKKEVFDNTSYKNDEYFKYETMSYYNLEAIL 222
++ ES N+ G K S K PV E FDNT+YKN ++ Y T ++ +L L
Sbjct: 34 LSAESGKNEKGLPPNPKK-QSPPKKPVSAAPTEPFDNTTYKNLQHHDYSTYTFLDLNLDL 92
Query: 223 KPNRVHSIKSSRK 261
R+ S R+
Sbjct: 93 SKFRMPQPSSGRE 105
>sp|Q9UBE0|ULE1A_HUMAN Ubiquitin-like 1-activating enzyme E1A (SUMO-1-activating enzyme
subunit 1)
Length = 346
Score = 30.0 bits (66), Expect = 3.1
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Frame = +1
Query: 10 NCSKSDDISLQNLIAKESTVNKDGGDGKNKDITSDVKTPVIKKEVF---------DNTSY 162
N + + + + +AK S +DG D K + S T V KK VF D +S
Sbjct: 168 NLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVKEALEVDWSSE 227
Query: 163 KNDEYFKYETMSYYNLEAILK 225
K K T Y+ L+ +LK
Sbjct: 228 KAKAALKRTTSDYFLLQVLLK 248
>sp|Q8M355|RMAR_SACCA Mitochondrial ribosomal protein VAR1
Length = 326
Score = 30.0 bits (66), Expect = 3.1
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 321 LNKIKIYEFFYMNNNL*NSS-YTRVFISLNNIG*F*HFHNINFMYLMNVKELVSI 482
+NK+ I ++Y+NNN N++ Y + L N +N N MY+ N+ ++S+
Sbjct: 117 MNKLNIKFYYYINNNNMNTNYYMNMLYKLMNT-----LNNNNNMYMNNMNNIMSM 166
>sp|P19151|ADEN_ADEB7 Adenain (Endoprotease) (Late L3 23 kDa protein)
Length = 202
Score = 29.3 bits (64), Expect = 5.3
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +1
Query: 142 VFDNTSYKNDEYFKYETMSYYNL---EAILKPNR-VHSIKSSR 258
+FD +KND+ KY SY NL A+ P++ V IK+S+
Sbjct: 70 IFDPLGWKNDQLMKYYKFSYSNLIKRSALSSPDKCVKVIKNSQ 112
>sp|P77989|BGAL_THEET Beta-galactosidase (Lactase)
Length = 743
Score = 29.3 bits (64), Expect = 5.3
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 133 KKEVFDNTSYKNDEYF--KYETMSYYNLEAILKPNRVHSIKSSRKYSYPN 276
K ++ ++ Y EY Y T SY NL ++ R+H++ ++Y PN
Sbjct: 440 KIQLPNHKKYMVTEYMGHMYPTKSYDNLNRLITHARLHALIQDKQYGIPN 489
>sp|Q8XJK1|ENGA_CLOPE GTP-binding protein engA
Length = 438
Score = 28.9 bits (63), Expect = 6.9
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +1
Query: 118 KTPVIKKEVFDNTSYKNDEYFKYETMSY--YNLEAILKPNRVHSIKSSRKYSYPN 276
K +I+K+ ++Y+ D K + M Y Y + L RVH I S+ KY Y N
Sbjct: 296 KWDLIEKDDKTLSNYQKDLQQKLKFMPYAKYLFISALTGQRVHKILSTAKYCYDN 350
>sp|P34508|CRN6_CAEEL Cell death-related nuclease 6 precursor
Length = 378
Score = 28.5 bits (62), Expect = 9.0
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 97 KDITSDVKTPVIKKEVFDNTSYKNDEYFKYETMSYYNLEAILKPNRVHSIKSSRKYSYP 273
KD+ SD P +K + E + +++ YNL ++ PN V S S++ P
Sbjct: 235 KDLYSDFVGPTLKSSI-------KVETWNHQSGDEYNLPSVCDPNHVQSTMSAKYIRLP 286
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,830,487
Number of Sequences: 369166
Number of extensions: 804639
Number of successful extensions: 1780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1780
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)