Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01223
(270 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O53657|MML3_MYCTU Putative membrane protein mmpL3 30 2.3
sp|Q7UK56|GATB_RHOBA Aspartyl/glutamyl-tRNA(Asn/Gln) amidot... 29 3.9
sp|Q75CF3|RPN2_ASHGO 26S proteasome regulatory subunit RPN2 29 3.9
>sp|O53657|MML3_MYCTU Putative membrane protein mmpL3
Length = 944
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 161 IHGINAKIPILEAILLLTMIIFYFNKF 241
IHG+ AK+P++ ILL T I+ F F
Sbjct: 552 IHGLFAKMPLMVVILLTTTIVLMFLAF 578
>sp|Q7UK56|GATB_RHOBA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
(Asp/Glu-ADT subunit B)
Length = 497
Score = 28.9 bits (63), Expect = 3.9
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 64 LNIFEDKIINSLLDPIGQTKATNSFRNWRKLHDSWDQRQNTNFRGNPATHDD 219
+N+ D + PI + K NSFRN ++ D QRQ ++ N T DD
Sbjct: 212 VNLHIDVEGKKIATPIVEIKNLNSFRNVQRAIDYEVQRQLVDWEENRQTIDD 263
>sp|Q75CF3|RPN2_ASHGO 26S proteasome regulatory subunit RPN2
Length = 930
Score = 28.9 bits (63), Expect = 3.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 131 TAFAIGVSCMIHGINAKIPILEAI 202
TAFA+GV+C G+ A I +LE +
Sbjct: 613 TAFALGVACAGRGLQAAIDVLEPL 636
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,505,854
Number of Sequences: 369166
Number of extensions: 523197
Number of successful extensions: 1237
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 68,354,980
effective HSP length: 59
effective length of database: 57,455,615
effective search space used: 1723668450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)