Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01219
(845 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing pro... 67 6e-11
sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing pro... 67 8e-11
sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains conta... 59 1e-08
sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains conta... 59 2e-08
sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains conta... 56 1e-07
sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finge... 55 3e-07
sp|P34272|YKH4_CAEEL Hypothetical protein C02C2.4 in chromo... 34 0.45
sp|Q04913|NR4A2_XENLA Orphan nuclear receptor NR4A2 (Orphan... 33 0.76
sp|P08941|ROS_CHICK Proto-oncogene tyrosine-protein kinase ... 33 0.99
sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B (U... 32 2.2
>sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing protein 2 (Zinc finger protein
216)
Length = 213
Score = 67.0 bits (162), Expect = 6e-11
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Frame = +1
Query: 541 TRNYSKSLAPFINKMNSNGLPQ---ITTDTNKISGGNCISGRSSSLGPPNLKINTDDISE 711
+RN + P +M + + ITT ++S ++ S S+ P+ + + E
Sbjct: 87 SRNVPVAALPVTQQMTEMSISREDKITTPKTEVSEP-VVTQPSPSVSQPSTSQSEEKAPE 145
Query: 712 --KIRTKRCFLCNKKTGLATSYDCRCGQNFCSRHRYAETHQCTYDY 843
K + RCF+C KK GL T +DCRCG FC HRY++ H C YDY
Sbjct: 146 LPKPKKNRCFMCRKKVGL-TGFDCRCGNLFCGLHRYSDKHNCPYDY 190
>sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing protein 2 (Zinc finger protein
216)
Length = 213
Score = 66.6 bits (161), Expect = 8e-11
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Frame = +1
Query: 541 TRNYSKSLAPFINKMNSNGLPQ---ITTDTNKISGGNCISGRSSSLGPPNLKINTDDISE 711
+RN + P +M + + ITT ++S ++ S S+ P+ + + E
Sbjct: 87 SRNVPVAALPVTQQMTEMSISREDKITTPKTEVSEP-VVTQPSPSVSQPSSSQSEEKAPE 145
Query: 712 --KIRTKRCFLCNKKTGLATSYDCRCGQNFCSRHRYAETHQCTYDY 843
K + RCF+C KK GL T +DCRCG FC HRY++ H C YDY
Sbjct: 146 LPKPKKNRCFMCRKKVGL-TGFDCRCGNLFCGLHRYSDKHNCPYDY 190
>sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains containing protein At2g36320
Length = 161
Score = 59.3 bits (142), Expect = 1e-08
Identities = 25/54 (46%), Positives = 33/54 (61%)
Frame = +1
Query: 682 LKINTDDISEKIRTKRCFLCNKKTGLATSYDCRCGQNFCSRHRYAETHQCTYDY 843
++I T+ S R RC +C K+ GL T + CRCG FC HRY E H CT+D+
Sbjct: 86 IQIPTEQPSPPQRPNRCTVCRKRVGL-TGFMCRCGTTFCGSHRYPEVHGCTFDF 138
>sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains containing protein At1g12440
Length = 168
Score = 58.5 bits (140), Expect = 2e-08
Identities = 33/110 (30%), Positives = 49/110 (44%)
Frame = +1
Query: 514 ECNIGMKYSTRNYSKSLAPFINKMNSNGLPQITTDTNKISGGNCISGRSSSLGPPNLKIN 693
+C ++ + + + A +N N + +I+ G SG SSS
Sbjct: 37 KCYRDIRATEEQTASAKAAVEKSLNPNKPKTQPQQSQEITQGVLGSGSSSSSTRGGDSAA 96
Query: 694 TDDISEKIRTKRCFLCNKKTGLATSYDCRCGQNFCSRHRYAETHQCTYDY 843
K RC CNKK G+ T + CRCG FC HRY E+H+C +D+
Sbjct: 97 APLDPPKSTATRCLSCNKKVGV-TGFKCRCGSTFCGTHRYPESHECQFDF 145
>sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains containing protein At4g12040
Length = 175
Score = 56.2 bits (134), Expect = 1e-07
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +1
Query: 727 RCFLCNKKTGLATSYDCRCGQNFCSRHRYAETHQCTYDY 843
RCF CNKK G+ + C+CG FC HRY E H+C++D+
Sbjct: 115 RCFSCNKKVGVM-GFKCKCGSTFCGSHRYPEKHECSFDF 152
>sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finger protein ISAP1
(Stress-associated protein 1) (OsISAP1)
Length = 164
Score = 54.7 bits (130), Expect = 3e-07
Identities = 21/47 (44%), Positives = 29/47 (61%)
Frame = +1
Query: 703 ISEKIRTKRCFLCNKKTGLATSYDCRCGQNFCSRHRYAETHQCTYDY 843
+++ RC C K+ GL T + CRCG FC HRY++ H C+YDY
Sbjct: 96 VAKTSAVNRCSRCRKRVGL-TGFRCRCGHLFCGEHRYSDRHGCSYDY 141
>sp|P34272|YKH4_CAEEL Hypothetical protein C02C2.4 in chromosome III
Length = 568
Score = 34.3 bits (77), Expect = 0.45
Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
Frame = -1
Query: 557 FE*FLVLYFIPILHSPFGNNGGYSSTDCIFGS--ESIWGFN-----KGEILSN*DVVSNN 399
F+ +L YF +LH NG +++ IF + +WG + +ILSN V +
Sbjct: 343 FQIYLPSYFKEVLHLGVIANGTFTAIPNIFNMIFKVVWGIGIDKLKENKILSNTKAVKVS 402
Query: 398 FGLYGNGANCPFLNICLLVDRTPLIIGLICFDCLLSFNCSNF 273
G+ G++ + + VD + GLI F CL+ + F
Sbjct: 403 HGVASFGSSFSLILLAFFVDCSNPTTGLIFF-CLMYSSMGTF 443
>sp|Q04913|NR4A2_XENLA Orphan nuclear receptor NR4A2 (Orphan nuclear receptor NURR1)
(Nerve growth factor-induced protein I-B homolog)
Length = 577
Score = 33.5 bits (75), Expect = 0.76
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 334 VRSTSRQMLRNGQLAPLPYKPKLLETTSQLESISPLLKPHIDSEPKMQSVD 486
V+ R G+ LP KPK + +S ++ I+ L++ HIDS P +D
Sbjct: 312 VKEVVRTDSLKGRRGRLPSKPKQIAESSPVDLINSLVRAHIDSIPSSSKLD 362
>sp|P08941|ROS_CHICK Proto-oncogene tyrosine-protein kinase ROS precursor (c-ros-1)
Length = 2311
Score = 33.1 bits (74), Expect = 0.99
Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 2/125 (1%)
Frame = +1
Query: 385 PYKPKLLETTSQLESISPLLKPHIDSEPKMQSVDEYPPLFPNG-ECNIGMKYSTRNYSKS 561
P P S + + +P++K S P V +PPLFPNG + ++ N+
Sbjct: 190 PPSPSYRTHASGVPTTAPIIKDIQSSSPNTVEVSWFPPLFPNGLIVGYNLVLTSENHE-- 247
Query: 562 LAPFINKMNSNGLPQITTDTNKISGGNCISGRSSSLGPP-NLKINTDDISEKIRTKRCFL 738
+ + +T N + ++ + GPP I T + K + K FL
Sbjct: 248 ---LLRASRGHSFQFYSTFPNSTYRFSIVAVNEAGAGPPAEANITTPESKVKEKAKWLFL 304
Query: 739 CNKKT 753
++
Sbjct: 305 SRNQS 309
>sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B (Upstream binding factor 1-B)
(UBF-1-B) (xUBF-2)
Length = 701
Score = 32.0 bits (71), Expect = 2.2
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 331 GVRSTSRQMLRNGQLAPLPYKPKLLETTSQLESISPLLKPH 453
G + S+++L NG+L LP K +++E S+ ISP K +
Sbjct: 514 GYQKFSQELLSNGELNHLPLKERMVEIGSRWHRISPTQKDY 554
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,598,632
Number of Sequences: 369166
Number of extensions: 1857165
Number of successful extensions: 4695
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4688
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)