Planaria EST Database


DrC_01219

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01219
         (845 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O76080|Z20D2_HUMAN  Zinc finger A20 domain containing pro...    67   6e-11
sp|O88878|Z20D2_MOUSE  Zinc finger A20 domain containing pro...    67   8e-11
sp|Q9SJM6|ZF2N2_ARATH  Zinc finger A20 and AN1 domains conta...    59   1e-08
sp|Q6NNI8|ZF2N1_ARATH  Zinc finger A20 and AN1 domains conta...    59   2e-08
sp|Q9SZ69|ZF2N3_ARATH  Zinc finger A20 and AN1 domains conta...    56   1e-07
sp|Q9LLX1|ISAP1_ORYSA  Multiple stress-responsive zinc-finge...    55   3e-07
sp|P34272|YKH4_CAEEL  Hypothetical protein C02C2.4 in chromo...    34   0.45 
sp|Q04913|NR4A2_XENLA  Orphan nuclear receptor NR4A2 (Orphan...    33   0.76 
sp|P08941|ROS_CHICK  Proto-oncogene tyrosine-protein kinase ...    33   0.99 
sp|P25980|UBF1B_XENLA  Nucleolar transcription factor 1-B (U...    32   2.2  
>sp|O76080|Z20D2_HUMAN Zinc finger A20 domain containing protein 2 (Zinc finger protein
           216)
          Length = 213

 Score = 67.0 bits (162), Expect = 6e-11
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
 Frame = +1

Query: 541 TRNYSKSLAPFINKMNSNGLPQ---ITTDTNKISGGNCISGRSSSLGPPNLKINTDDISE 711
           +RN   +  P   +M    + +   ITT   ++S    ++  S S+  P+   + +   E
Sbjct: 87  SRNVPVAALPVTQQMTEMSISREDKITTPKTEVSEP-VVTQPSPSVSQPSTSQSEEKAPE 145

Query: 712 --KIRTKRCFLCNKKTGLATSYDCRCGQNFCSRHRYAETHQCTYDY 843
             K +  RCF+C KK GL T +DCRCG  FC  HRY++ H C YDY
Sbjct: 146 LPKPKKNRCFMCRKKVGL-TGFDCRCGNLFCGLHRYSDKHNCPYDY 190
>sp|O88878|Z20D2_MOUSE Zinc finger A20 domain containing protein 2 (Zinc finger protein
           216)
          Length = 213

 Score = 66.6 bits (161), Expect = 8e-11
 Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
 Frame = +1

Query: 541 TRNYSKSLAPFINKMNSNGLPQ---ITTDTNKISGGNCISGRSSSLGPPNLKINTDDISE 711
           +RN   +  P   +M    + +   ITT   ++S    ++  S S+  P+   + +   E
Sbjct: 87  SRNVPVAALPVTQQMTEMSISREDKITTPKTEVSEP-VVTQPSPSVSQPSSSQSEEKAPE 145

Query: 712 --KIRTKRCFLCNKKTGLATSYDCRCGQNFCSRHRYAETHQCTYDY 843
             K +  RCF+C KK GL T +DCRCG  FC  HRY++ H C YDY
Sbjct: 146 LPKPKKNRCFMCRKKVGL-TGFDCRCGNLFCGLHRYSDKHNCPYDY 190
>sp|Q9SJM6|ZF2N2_ARATH Zinc finger A20 and AN1 domains containing protein At2g36320
          Length = 161

 Score = 59.3 bits (142), Expect = 1e-08
 Identities = 25/54 (46%), Positives = 33/54 (61%)
 Frame = +1

Query: 682 LKINTDDISEKIRTKRCFLCNKKTGLATSYDCRCGQNFCSRHRYAETHQCTYDY 843
           ++I T+  S   R  RC +C K+ GL T + CRCG  FC  HRY E H CT+D+
Sbjct: 86  IQIPTEQPSPPQRPNRCTVCRKRVGL-TGFMCRCGTTFCGSHRYPEVHGCTFDF 138
>sp|Q6NNI8|ZF2N1_ARATH Zinc finger A20 and AN1 domains containing protein At1g12440
          Length = 168

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 33/110 (30%), Positives = 49/110 (44%)
 Frame = +1

Query: 514 ECNIGMKYSTRNYSKSLAPFINKMNSNGLPQITTDTNKISGGNCISGRSSSLGPPNLKIN 693
           +C   ++ +    + + A     +N N        + +I+ G   SG SSS         
Sbjct: 37  KCYRDIRATEEQTASAKAAVEKSLNPNKPKTQPQQSQEITQGVLGSGSSSSSTRGGDSAA 96

Query: 694 TDDISEKIRTKRCFLCNKKTGLATSYDCRCGQNFCSRHRYAETHQCTYDY 843
                 K    RC  CNKK G+ T + CRCG  FC  HRY E+H+C +D+
Sbjct: 97  APLDPPKSTATRCLSCNKKVGV-TGFKCRCGSTFCGTHRYPESHECQFDF 145
>sp|Q9SZ69|ZF2N3_ARATH Zinc finger A20 and AN1 domains containing protein At4g12040
          Length = 175

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 20/39 (51%), Positives = 27/39 (69%)
 Frame = +1

Query: 727 RCFLCNKKTGLATSYDCRCGQNFCSRHRYAETHQCTYDY 843
           RCF CNKK G+   + C+CG  FC  HRY E H+C++D+
Sbjct: 115 RCFSCNKKVGVM-GFKCKCGSTFCGSHRYPEKHECSFDF 152
>sp|Q9LLX1|ISAP1_ORYSA Multiple stress-responsive zinc-finger protein ISAP1
           (Stress-associated protein 1) (OsISAP1)
          Length = 164

 Score = 54.7 bits (130), Expect = 3e-07
 Identities = 21/47 (44%), Positives = 29/47 (61%)
 Frame = +1

Query: 703 ISEKIRTKRCFLCNKKTGLATSYDCRCGQNFCSRHRYAETHQCTYDY 843
           +++     RC  C K+ GL T + CRCG  FC  HRY++ H C+YDY
Sbjct: 96  VAKTSAVNRCSRCRKRVGL-TGFRCRCGHLFCGEHRYSDRHGCSYDY 141
>sp|P34272|YKH4_CAEEL Hypothetical protein C02C2.4 in chromosome III
          Length = 568

 Score = 34.3 bits (77), Expect = 0.45
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 7/102 (6%)
 Frame = -1

Query: 557 FE*FLVLYFIPILHSPFGNNGGYSSTDCIFGS--ESIWGFN-----KGEILSN*DVVSNN 399
           F+ +L  YF  +LH     NG +++   IF    + +WG       + +ILSN   V  +
Sbjct: 343 FQIYLPSYFKEVLHLGVIANGTFTAIPNIFNMIFKVVWGIGIDKLKENKILSNTKAVKVS 402

Query: 398 FGLYGNGANCPFLNICLLVDRTPLIIGLICFDCLLSFNCSNF 273
            G+   G++   + +   VD +    GLI F CL+  +   F
Sbjct: 403 HGVASFGSSFSLILLAFFVDCSNPTTGLIFF-CLMYSSMGTF 443
>sp|Q04913|NR4A2_XENLA Orphan nuclear receptor NR4A2 (Orphan nuclear receptor NURR1)
           (Nerve growth factor-induced protein I-B homolog)
          Length = 577

 Score = 33.5 bits (75), Expect = 0.76
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +1

Query: 334 VRSTSRQMLRNGQLAPLPYKPKLLETTSQLESISPLLKPHIDSEPKMQSVD 486
           V+   R     G+   LP KPK +  +S ++ I+ L++ HIDS P    +D
Sbjct: 312 VKEVVRTDSLKGRRGRLPSKPKQIAESSPVDLINSLVRAHIDSIPSSSKLD 362
>sp|P08941|ROS_CHICK Proto-oncogene tyrosine-protein kinase ROS precursor (c-ros-1)
          Length = 2311

 Score = 33.1 bits (74), Expect = 0.99
 Identities = 27/125 (21%), Positives = 48/125 (38%), Gaps = 2/125 (1%)
 Frame = +1

Query: 385 PYKPKLLETTSQLESISPLLKPHIDSEPKMQSVDEYPPLFPNG-ECNIGMKYSTRNYSKS 561
           P  P      S + + +P++K    S P    V  +PPLFPNG      +  ++ N+   
Sbjct: 190 PPSPSYRTHASGVPTTAPIIKDIQSSSPNTVEVSWFPPLFPNGLIVGYNLVLTSENHE-- 247

Query: 562 LAPFINKMNSNGLPQITTDTNKISGGNCISGRSSSLGPP-NLKINTDDISEKIRTKRCFL 738
               +     +     +T  N     + ++   +  GPP    I T +   K + K  FL
Sbjct: 248 ---LLRASRGHSFQFYSTFPNSTYRFSIVAVNEAGAGPPAEANITTPESKVKEKAKWLFL 304

Query: 739 CNKKT 753
              ++
Sbjct: 305 SRNQS 309
>sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B (Upstream binding factor 1-B)
           (UBF-1-B) (xUBF-2)
          Length = 701

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +1

Query: 331 GVRSTSRQMLRNGQLAPLPYKPKLLETTSQLESISPLLKPH 453
           G +  S+++L NG+L  LP K +++E  S+   ISP  K +
Sbjct: 514 GYQKFSQELLSNGELNHLPLKERMVEIGSRWHRISPTQKDY 554
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.315    0.132    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,598,632
Number of Sequences: 369166
Number of extensions: 1857165
Number of successful extensions: 4695
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4688
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)