• TOP
• EST
• Cluster

Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01180
         (479 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P26572|MGAT1_HUMAN  Alpha-1,3-mannosyl-glycoprotein 2-bet...    29   6.4  

>sp|P26572|MGAT1_HUMAN Alpha-1,3-mannosyl-glycoprotein
           2-beta-N-acetylglucosaminyltransferase
           (N-glycosyl-oligosaccharide-glycoprotein
           N-acetylglucosaminyltransferase I) (GNT-I) (GlcNAc-T I)
          Length = 445

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -1

Query: 242 KLASHGQLL--HIRFLPLNKHFLHIT-LDL 162
           K  SHGQ    H++F+ LN+ F+H T LDL
Sbjct: 317 KGVSHGQFFDQHLKFIKLNQQFVHFTQLDL 346

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,760,559
Number of Sequences: 369166
Number of extensions: 979998
Number of successful extensions: 2015
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2015
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2822184570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)