Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01179
(769 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P55879|GLI3_CHICK Zinc finger protein GLI3 34 0.38
sp|Q8PK58|RLUB_XANAC Ribosomal large subunit pseudouridine ... 31 3.2
sp|P46379|BAT3_HUMAN Large proline-rich protein BAT3 (HLA-B... 31 4.2
sp|P35568|IRS1_HUMAN Insulin receptor substrate 1 (IRS-1) 31 4.2
sp|Q49378|P32_MYCGA P32 adhesin (Cytadhesin P32) 31 4.2
sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3... 30 7.2
sp|Q91474|HNF1_SALSA Hepatocyte nuclear factor 1 (HNF-1) (S... 30 7.2
sp|Q08432|PATB_BACSU Putative aminotransferase B 30 7.2
sp|P21519|MAM_DROME Neurogenic protein mastermind 30 7.2
sp|Q9Z1R2|BAT3_MOUSE Large proline-rich protein BAT3 (HLA-B... 30 7.2
>sp|P55879|GLI3_CHICK Zinc finger protein GLI3
Length = 663
Score = 34.3 bits (77), Expect = 0.38
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Frame = +1
Query: 163 EPAVSMKHSPQLHNPNMEVIPTMGNNIADYCNPMPPNGPS-FSAEHAMRVSQSSVSMGVQ 339
+P+ KH +H P+ V N++ P+ NG + SA+ + +VS+ S
Sbjct: 374 DPSSLRKHVKTVHGPDAHVTKKQRNDVHPRPPPLKENGDNEASAKQSSKVSEESPEANST 433
Query: 340 PISQLHMMQQGIGSHHGPISMQSMPGGPSNSAQFISHQGGPIN 468
S +Q + QS PGG S+ + S G N
Sbjct: 434 TRSMEDCLQVKTIKTENSVMCQSSPGGQSSCSSEPSPLGSTNN 476
>sp|Q8PK58|RLUB_XANAC Ribosomal large subunit pseudouridine synthase B (rRNA-uridine
isomerase B) (rRNA pseudouridylate synthase B)
Length = 550
Score = 31.2 bits (69), Expect = 3.2
Identities = 20/65 (30%), Positives = 28/65 (43%)
Frame = +1
Query: 265 PPNGPSFSAEHAMRVSQSSVSMGVQPISQLHMMQQGIGSHHGPISMQSMPGGPSNSAQFI 444
P N PSF ++HA + +P + + G G + GP S PGGP A+
Sbjct: 463 PGNAPSFPSDHAN--PGFNPYGAARPAGRPSGGRPGPGGNRGPASANRGPGGPGGGARGP 520
Query: 445 SHQGG 459
GG
Sbjct: 521 GGPGG 525
>sp|P46379|BAT3_HUMAN Large proline-rich protein BAT3 (HLA-B-associated transcript 3)
(G3)
Length = 1132
Score = 30.8 bits (68), Expect = 4.2
Identities = 31/136 (22%), Positives = 48/136 (35%), Gaps = 20/136 (14%)
Frame = +1
Query: 139 MPSSGMNFEPAVSMKHSPQLHNPNMEVIPTMGNNIADYCNPMPPNGPS----FSAEHAMR 306
M +G P + + P V P+ N+ PP GP+ S +R
Sbjct: 387 MTGNGTRPPPTPNAEAPPPGPGQASSVAPS-STNVESSAEGAPPPGPAPPPATSHPRVIR 445
Query: 307 VSQSSVSMGVQPISQLHMMQQGIGSH----------------HGPISMQSMPGGPSNSAQ 438
+S SV +P+ +HM Q G+ HG Q +PG P+ +
Sbjct: 446 ISHQSV----EPVVMMHMNIQDSGTQPGGVPSAPTGPLGPPGHGQTLGQQVPGFPTAPTR 501
Query: 439 FISHQGGPINASPQFP 486
+ + P A P P
Sbjct: 502 VVIARPTPPQARPSHP 517
>sp|P35568|IRS1_HUMAN Insulin receptor substrate 1 (IRS-1)
Length = 1242
Score = 30.8 bits (68), Expect = 4.2
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Frame = +1
Query: 133 EYMPSSGMNFEPAVSM----KHSPQLHNPN--MEVIPTMGNNIADYCNPMPPNGPSFSAE 294
+YMP S + + + PQ +PN M + P+ G C+P GPS S+
Sbjct: 631 DYMPMSPKSVSAPQQIINPIRRHPQRVDPNGYMMMSPSGG------CSPDIGGGPSSSSS 684
Query: 295 HAMRVSQSSVSMGVQPISQLHMMQQGIGSHHGPISMQSMPGGPSNSAQFISHQGGPINAS 474
+ V S S G + G+G HH + P S+ + + G +N S
Sbjct: 685 SSNAVP-SGTSYG-------KLWTNGVGGHHSHVLPHPKPPVESSGGKLLPCTGDYMNMS 736
Query: 475 P 477
P
Sbjct: 737 P 737
>sp|Q49378|P32_MYCGA P32 adhesin (Cytadhesin P32)
Length = 294
Score = 30.8 bits (68), Expect = 4.2
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
Frame = +1
Query: 112 QHQSHTMEYMPSSGMNFE----PA-VSMKHSPQLHNPNMEVIPTMGNNIADYCNPMPPNG 276
+ Q+ T P+ +N + PA V++ ++PQ+ ++ P G N NP G
Sbjct: 114 EEQNKTEAIEPTEEVNTQEPTQPAGVNVANNPQMGINQPQINPQFGPNPQQRINPQCFGG 173
Query: 277 PSFSAEHAMR--VSQSSVSMGVQPISQLHMMQQGIGSHHGPISMQSMPGGPS 426
P + MR +Q MG P +Q+ M G + P M MP P+
Sbjct: 174 PMQPNQMGMRPGFNQMPPQMGGMPPNQMGMRP---GFNQMPPQMGGMPPRPN 222
>sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3a (Transcriptional corepressor
Sin3a) (Histone deacetylase complex subunit Sin3a)
Length = 1273
Score = 30.0 bits (66), Expect = 7.2
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +1
Query: 106 FSQHQSHTMEYMPSSGMNFEPAVSMKHSPQLHNPNMEVIPTMGNNIADYCNPMPPNGP 279
+S S+ + MP S + PA++ HS H+P V P G + + +P PP P
Sbjct: 56 YSVTPSYQVSAMPQSSGSHGPAIAAVHSSH-HHPT-AVQPHGGQVVQSHAHPAPPVAP 111
>sp|Q91474|HNF1_SALSA Hepatocyte nuclear factor 1 (HNF-1) (SHNF1)
Length = 559
Score = 30.0 bits (66), Expect = 7.2
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
Frame = +1
Query: 121 SHTMEYMPSSGMNFEPAVSMKH--SPQLHNPNMEVIPTMGNNIADYCNPMPPNGPSFSAE 294
+HT+ + P GM + ++ + S + HN + +G +A + P+
Sbjct: 285 NHTLSHSPEQGMKYSQQITCDNLGSSRGHNGDRG----LGGRLASPIQ-LEPSHTLLETH 339
Query: 295 HAMRVSQSSVSMGVQPISQLHMMQQGIGSHHGPISMQSMP 414
H VS V ++ LH + HHG I M S+P
Sbjct: 340 HHKPVSGGGPLPPVSTLTSLHSLSASPAPHHGLI-MTSLP 378
>sp|Q08432|PATB_BACSU Putative aminotransferase B
Length = 387
Score = 30.0 bits (66), Expect = 7.2
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 253 CNPMPPNGPSFSAEHAMRVSQSSVSMGVQPIS-QLHMMQQGIGSHHGPISMQS 408
CNP P+G S+S E +++ + + GV +S ++H G H P + S
Sbjct: 167 CNPHNPSGRSWSREDLLKLGELCLEHGVTVVSDEIHSDLMLYGHKHTPFASLS 219
>sp|P21519|MAM_DROME Neurogenic protein mastermind
Length = 1594
Score = 30.0 bits (66), Expect = 7.2
Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 22/113 (19%)
Frame = +1
Query: 112 QHQSHTMEYMPSSGMNFEPAVSMKHSPQLHNPNMEVIPTMGN------------------ 237
Q Q +Y P S N A + + P PN P GN
Sbjct: 809 QQQQQQQQYSPFSNQNPNAAANFLNCPPRGGPNGNQQP--GNLAQQQQQPGAGPQQQQQR 866
Query: 238 -NIADYCNPMPPNGPSFSAEHAMRVSQ---SSVSMGVQPISQLHMMQQGIGSH 384
N A+ P GP + +A + Q ++ ++ ++ QLH+ QQG G+H
Sbjct: 867 GNAANGQQNNPNAGPGGNTPNAPQQQQQQSTTTTLQMKQTQQLHISQQGGGAH 919
>sp|Q9Z1R2|BAT3_MOUSE Large proline-rich protein BAT3 (HLA-B-associated transcript 3)
Length = 1154
Score = 30.0 bits (66), Expect = 7.2
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 16/92 (17%)
Frame = +1
Query: 259 PMPPNGPSFSAEHAMRVSQSSVSMGVQPISQLHMMQQGIGSH----------------HG 390
P PP P+ S +R+S SV +P+ +HM Q G+ HG
Sbjct: 433 PAPP--PASSHPRVIRISHQSV----EPVVMMHMNIQDSGAQPGGVPSAPTGPLGPPGHG 486
Query: 391 PISMQSMPGGPSNSAQFISHQGGPINASPQFP 486
Q +PG P+ + + + P A P P
Sbjct: 487 QTLGQQVPGFPTAPTRVVIARPTPPQARPSHP 518
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,717,267
Number of Sequences: 369166
Number of extensions: 1816665
Number of successful extensions: 4161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4150
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)