Planaria EST Database


DrC_01179

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01179
         (769 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55879|GLI3_CHICK  Zinc finger protein GLI3                     34   0.38 
sp|Q8PK58|RLUB_XANAC  Ribosomal large subunit pseudouridine ...    31   3.2  
sp|P46379|BAT3_HUMAN  Large proline-rich protein BAT3 (HLA-B...    31   4.2  
sp|P35568|IRS1_HUMAN  Insulin receptor substrate 1 (IRS-1)         31   4.2  
sp|Q49378|P32_MYCGA  P32 adhesin (Cytadhesin P32)                  31   4.2  
sp|Q96ST3|SIN3A_HUMAN  Paired amphipathic helix protein Sin3...    30   7.2  
sp|Q91474|HNF1_SALSA  Hepatocyte nuclear factor 1 (HNF-1) (S...    30   7.2  
sp|Q08432|PATB_BACSU  Putative aminotransferase B                  30   7.2  
sp|P21519|MAM_DROME  Neurogenic protein mastermind                 30   7.2  
sp|Q9Z1R2|BAT3_MOUSE  Large proline-rich protein BAT3 (HLA-B...    30   7.2  
>sp|P55879|GLI3_CHICK Zinc finger protein GLI3
          Length = 663

 Score = 34.3 bits (77), Expect = 0.38
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
 Frame = +1

Query: 163 EPAVSMKHSPQLHNPNMEVIPTMGNNIADYCNPMPPNGPS-FSAEHAMRVSQSSVSMGVQ 339
           +P+   KH   +H P+  V     N++     P+  NG +  SA+ + +VS+ S      
Sbjct: 374 DPSSLRKHVKTVHGPDAHVTKKQRNDVHPRPPPLKENGDNEASAKQSSKVSEESPEANST 433

Query: 340 PISQLHMMQQGIGSHHGPISMQSMPGGPSNSAQFISHQGGPIN 468
             S    +Q         +  QS PGG S+ +   S  G   N
Sbjct: 434 TRSMEDCLQVKTIKTENSVMCQSSPGGQSSCSSEPSPLGSTNN 476
>sp|Q8PK58|RLUB_XANAC Ribosomal large subunit pseudouridine synthase B (rRNA-uridine
           isomerase B) (rRNA pseudouridylate synthase B)
          Length = 550

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 20/65 (30%), Positives = 28/65 (43%)
 Frame = +1

Query: 265 PPNGPSFSAEHAMRVSQSSVSMGVQPISQLHMMQQGIGSHHGPISMQSMPGGPSNSAQFI 444
           P N PSF ++HA      +     +P  +    + G G + GP S    PGGP   A+  
Sbjct: 463 PGNAPSFPSDHAN--PGFNPYGAARPAGRPSGGRPGPGGNRGPASANRGPGGPGGGARGP 520

Query: 445 SHQGG 459
              GG
Sbjct: 521 GGPGG 525
>sp|P46379|BAT3_HUMAN Large proline-rich protein BAT3 (HLA-B-associated transcript 3)
           (G3)
          Length = 1132

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 31/136 (22%), Positives = 48/136 (35%), Gaps = 20/136 (14%)
 Frame = +1

Query: 139 MPSSGMNFEPAVSMKHSPQLHNPNMEVIPTMGNNIADYCNPMPPNGPS----FSAEHAMR 306
           M  +G    P  + +  P        V P+   N+       PP GP+     S    +R
Sbjct: 387 MTGNGTRPPPTPNAEAPPPGPGQASSVAPS-STNVESSAEGAPPPGPAPPPATSHPRVIR 445

Query: 307 VSQSSVSMGVQPISQLHMMQQGIGSH----------------HGPISMQSMPGGPSNSAQ 438
           +S  SV    +P+  +HM  Q  G+                 HG    Q +PG P+   +
Sbjct: 446 ISHQSV----EPVVMMHMNIQDSGTQPGGVPSAPTGPLGPPGHGQTLGQQVPGFPTAPTR 501

Query: 439 FISHQGGPINASPQFP 486
            +  +  P  A P  P
Sbjct: 502 VVIARPTPPQARPSHP 517
>sp|P35568|IRS1_HUMAN Insulin receptor substrate 1 (IRS-1)
          Length = 1242

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
 Frame = +1

Query: 133 EYMPSSGMNFEPAVSM----KHSPQLHNPN--MEVIPTMGNNIADYCNPMPPNGPSFSAE 294
           +YMP S  +      +    +  PQ  +PN  M + P+ G      C+P    GPS S+ 
Sbjct: 631 DYMPMSPKSVSAPQQIINPIRRHPQRVDPNGYMMMSPSGG------CSPDIGGGPSSSSS 684

Query: 295 HAMRVSQSSVSMGVQPISQLHMMQQGIGSHHGPISMQSMPGGPSNSAQFISHQGGPINAS 474
            +  V  S  S G        +   G+G HH  +     P   S+  + +   G  +N S
Sbjct: 685 SSNAVP-SGTSYG-------KLWTNGVGGHHSHVLPHPKPPVESSGGKLLPCTGDYMNMS 736

Query: 475 P 477
           P
Sbjct: 737 P 737
>sp|Q49378|P32_MYCGA P32 adhesin (Cytadhesin P32)
          Length = 294

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 7/112 (6%)
 Frame = +1

Query: 112 QHQSHTMEYMPSSGMNFE----PA-VSMKHSPQLHNPNMEVIPTMGNNIADYCNPMPPNG 276
           + Q+ T    P+  +N +    PA V++ ++PQ+     ++ P  G N     NP    G
Sbjct: 114 EEQNKTEAIEPTEEVNTQEPTQPAGVNVANNPQMGINQPQINPQFGPNPQQRINPQCFGG 173

Query: 277 PSFSAEHAMR--VSQSSVSMGVQPISQLHMMQQGIGSHHGPISMQSMPGGPS 426
           P    +  MR   +Q    MG  P +Q+ M     G +  P  M  MP  P+
Sbjct: 174 PMQPNQMGMRPGFNQMPPQMGGMPPNQMGMRP---GFNQMPPQMGGMPPRPN 222
>sp|Q96ST3|SIN3A_HUMAN Paired amphipathic helix protein Sin3a (Transcriptional corepressor
           Sin3a) (Histone deacetylase complex subunit Sin3a)
          Length = 1273

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +1

Query: 106 FSQHQSHTMEYMPSSGMNFEPAVSMKHSPQLHNPNMEVIPTMGNNIADYCNPMPPNGP 279
           +S   S+ +  MP S  +  PA++  HS   H+P   V P  G  +  + +P PP  P
Sbjct: 56  YSVTPSYQVSAMPQSSGSHGPAIAAVHSSH-HHPT-AVQPHGGQVVQSHAHPAPPVAP 111
>sp|Q91474|HNF1_SALSA Hepatocyte nuclear factor 1 (HNF-1) (SHNF1)
          Length = 559

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 2/100 (2%)
 Frame = +1

Query: 121 SHTMEYMPSSGMNFEPAVSMKH--SPQLHNPNMEVIPTMGNNIADYCNPMPPNGPSFSAE 294
           +HT+ + P  GM +   ++  +  S + HN +      +G  +A     + P+       
Sbjct: 285 NHTLSHSPEQGMKYSQQITCDNLGSSRGHNGDRG----LGGRLASPIQ-LEPSHTLLETH 339

Query: 295 HAMRVSQSSVSMGVQPISQLHMMQQGIGSHHGPISMQSMP 414
           H   VS       V  ++ LH +      HHG I M S+P
Sbjct: 340 HHKPVSGGGPLPPVSTLTSLHSLSASPAPHHGLI-MTSLP 378
>sp|Q08432|PATB_BACSU Putative aminotransferase B
          Length = 387

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 253 CNPMPPNGPSFSAEHAMRVSQSSVSMGVQPIS-QLHMMQQGIGSHHGPISMQS 408
           CNP  P+G S+S E  +++ +  +  GV  +S ++H      G  H P +  S
Sbjct: 167 CNPHNPSGRSWSREDLLKLGELCLEHGVTVVSDEIHSDLMLYGHKHTPFASLS 219
>sp|P21519|MAM_DROME Neurogenic protein mastermind
          Length = 1594

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 28/113 (24%), Positives = 43/113 (38%), Gaps = 22/113 (19%)
 Frame = +1

Query: 112  QHQSHTMEYMPSSGMNFEPAVSMKHSPQLHNPNMEVIPTMGN------------------ 237
            Q Q    +Y P S  N   A +  + P    PN    P  GN                  
Sbjct: 809  QQQQQQQQYSPFSNQNPNAAANFLNCPPRGGPNGNQQP--GNLAQQQQQPGAGPQQQQQR 866

Query: 238  -NIADYCNPMPPNGPSFSAEHAMRVSQ---SSVSMGVQPISQLHMMQQGIGSH 384
             N A+     P  GP  +  +A +  Q   ++ ++ ++   QLH+ QQG G+H
Sbjct: 867  GNAANGQQNNPNAGPGGNTPNAPQQQQQQSTTTTLQMKQTQQLHISQQGGGAH 919
>sp|Q9Z1R2|BAT3_MOUSE Large proline-rich protein BAT3 (HLA-B-associated transcript 3)
          Length = 1154

 Score = 30.0 bits (66), Expect = 7.2
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 16/92 (17%)
 Frame = +1

Query: 259 PMPPNGPSFSAEHAMRVSQSSVSMGVQPISQLHMMQQGIGSH----------------HG 390
           P PP  P+ S    +R+S  SV    +P+  +HM  Q  G+                 HG
Sbjct: 433 PAPP--PASSHPRVIRISHQSV----EPVVMMHMNIQDSGAQPGGVPSAPTGPLGPPGHG 486

Query: 391 PISMQSMPGGPSNSAQFISHQGGPINASPQFP 486
               Q +PG P+   + +  +  P  A P  P
Sbjct: 487 QTLGQQVPGFPTAPTRVVIARPTPPQARPSHP 518
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,717,267
Number of Sequences: 369166
Number of extensions: 1816665
Number of successful extensions: 4161
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4150
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7115329200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)