Planaria EST Database


DrC_01176

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01176
         (584 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q15427|SF3B4_HUMAN  Splicing factor 3B subunit 4 (Spliceo...   135   7e-32
sp|Q09442|YP85_CAEEL  Hypothetical RNA-binding protein C08B1...   121   1e-27
sp|O14102|SAP49_SCHPO  Spliceosome-associated protein 49           80   5e-15
sp|Q99181|HSH49_YEAST  HSH49 protein                               48   2e-05
sp|Q13310|PABP4_HUMAN  Polyadenylate-binding protein 4 (Poly...    36   0.080
sp|Q99069|GRP1_SORBI  Glycine-rich RNA-binding protein 1           34   0.31 
sp|O04425|FCA_ARATH  Flowering time control protein FCA            33   0.40 
sp|Q14576|ELAV3_HUMAN  ELAV-like protein 3 (Hu-antigen C) (H...    33   0.68 
sp|Q15717|ELAV1_HUMAN  ELAV-like protein 1 (Hu-antigen R) (HuR)    33   0.68 
sp|Q60900|ELAV3_MOUSE  ELAV-like protein 3 (Hu-antigen C) (HuC)    33   0.68 
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 (Spliceosome associated protein 49)
           (SAP 49) (SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa
           subunit)
          Length = 424

 Score =  135 bits (340), Expect = 7e-32
 Identities = 66/69 (95%), Positives = 68/69 (98%)
 Frame = +3

Query: 3   YAFINYASFEASDAAIEAMNGQYLCNRAITVSYAFKKDSKGERHGSAAERLLAAQNPLSQ 182
           YAFIN+ASF+ASDAAIEAMNGQYLCNR ITVSYAFKKDSKGERHGSAAERLLAAQNPLSQ
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLAAQNPLSQ 203

Query: 183 ADRPHQLFA 209
           ADRPHQLFA
Sbjct: 204 ADRPHQLFA 212
>sp|Q09442|YP85_CAEEL Hypothetical RNA-binding protein C08B11.5 in chromosome II
          Length = 388

 Score =  121 bits (303), Expect = 1e-27
 Identities = 56/69 (81%), Positives = 65/69 (94%)
 Frame = +3

Query: 3   YAFINYASFEASDAAIEAMNGQYLCNRAITVSYAFKKDSKGERHGSAAERLLAAQNPLSQ 182
           +AFIN+ASFEASD A+EAMNGQ+LCNRAITVSYAFK+DSKGERHG+AAER+LAAQNPL  
Sbjct: 144 FAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFP 203

Query: 183 ADRPHQLFA 209
            DRPHQ+F+
Sbjct: 204 KDRPHQVFS 212
>sp|O14102|SAP49_SCHPO Spliceosome-associated protein 49
          Length = 335

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 37/54 (68%), Positives = 44/54 (81%)
 Frame = +3

Query: 3   YAFINYASFEASDAAIEAMNGQYLCNRAITVSYAFKKDSKGERHGSAAERLLAA 164
           Y F++Y SFE +DAAIEAMN Q+L N+ ITVSYAFK++ KGERHG  AER LAA
Sbjct: 142 YGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAERKLAA 195
>sp|Q99181|HSH49_YEAST HSH49 protein
          Length = 213

 Score = 48.1 bits (113), Expect = 2e-05
 Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
 Frame = +3

Query: 6   AFINYASFEASDAAIEAMNGQYLCNRAITVSYAFKKDSKGE-RHGSAAERLL 158
           A++ +  FE +D AI+++N Q + N  ITV YAFK++ KG  ++G   +RLL
Sbjct: 151 AYVYFEDFEKADLAIKSLNNQLVANNRITVDYAFKENGKGNAKYGDDVDRLL 202
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 (Poly(A)-binding protein 4) (PABP
           4) (Inducible poly(A)-binding protein) (iPABP)
           (Activated-platelet protein 1) (APP-1)
          Length = 644

 Score = 35.8 bits (81), Expect = 0.080
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +3

Query: 3   YAFINYASFEASDAAIEAMNGQYLCNRAITVS-YAFKKDSKGERHGSAAE 149
           YAF+++ + EA+D AIE MNG  L +R + V  +  +K+ + E    A E
Sbjct: 140 YAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKE 189

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 3   YAFINYASFEASDAAIEAMNGQYLCNRAITVSYAFKK 113
           + F++Y   E ++ A+E MNG+ +  + I V  A KK
Sbjct: 233 FGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKK 269
>sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1
          Length = 142

 Score = 33.9 bits (76), Expect = 0.31
 Identities = 16/41 (39%), Positives = 26/41 (63%)
 Frame = +3

Query: 3   YAFINYASFEASDAAIEAMNGQYLCNRAITVSYAFKKDSKG 125
           + F+ +++ EA  +AIE MNG+ L  R ITV+ A  +  +G
Sbjct: 30  FGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSRGGRG 70
>sp|O04425|FCA_ARATH Flowering time control protein FCA
          Length = 747

 Score = 33.5 bits (75), Expect = 0.40
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +3

Query: 9   FINYASFEASDAAIEAMNGQYL---CNRAITVSYAFKKDSKGERHGSAAERLLAAQNPLS 179
           F+ Y+S E + AAI+ +NG Y    CN+ + V +A  K  K       A  +     P  
Sbjct: 255 FVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVRFAEPKRPKPGESREMAPPVGLGSGPRF 314

Query: 180 QADRP 194
           QA  P
Sbjct: 315 QASGP 319
>sp|Q14576|ELAV3_HUMAN ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic cerebellar
           degeneration-associated antigen) (Paraneoplastic limbic
           encephalitis antigen 21)
          Length = 367

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 3   YAFINYASFEASDAAIEAMNGQYLCNRAITVSYA 104
           Y F+NY+    +D AI  +NG  L  + I VSYA
Sbjct: 82  YGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
>sp|Q15717|ELAV1_HUMAN ELAV-like protein 1 (Hu-antigen R) (HuR)
          Length = 326

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 3   YAFINYASFEASDAAIEAMNGQYLCNRAITVSYA 104
           Y F+NY + + ++ AI  +NG  L ++ I VSYA
Sbjct: 63  YGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96
>sp|Q60900|ELAV3_MOUSE ELAV-like protein 3 (Hu-antigen C) (HuC)
          Length = 367

 Score = 32.7 bits (73), Expect = 0.68
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +3

Query: 3   YAFINYASFEASDAAIEAMNGQYLCNRAITVSYA 104
           Y F+NY+    +D AI  +NG  L  + I VSYA
Sbjct: 82  YGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYA 115
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,148,258
Number of Sequences: 369166
Number of extensions: 758268
Number of successful extensions: 2226
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2191
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4357244645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)