Planaria EST Database


DrC_01163

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01163
         (676 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8BH59|CMC1_MOUSE  Calcium-binding mitochondrial carrier ...    99   8e-21
sp|O75746|CMC1_HUMAN  Calcium-binding mitochondrial carrier ...    97   5e-20
sp|Q9UJS0|CMC2_HUMAN  Calcium-binding mitochondrial carrier ...    93   7e-19
sp|Q8HXW2|CMC2_MACFA  Calcium-binding mitochondrial carrier ...    91   3e-18
sp|Q9QXX4|CMC2_MOUSE  Calcium-binding mitochondrial carrier ...    91   4e-18
sp|Q21153|CMC1_CAEEL  Probable calcium-binding mitochondrial...    91   4e-18
sp|Q9VA73|CMC1_DROME  Calcium-binding mitochondrial carrier ...    79   1e-14
sp|Q57882|Y440_METJA  Hypothetical protein MJ0440                  31   3.4  
sp|P41023|DCDA_BACMT  Diaminopimelate decarboxylase (DAP dec...    30   5.8  
sp|Q7V2R3|QUEA_PROMP  S-adenosylmethionine:tRNA ribosyltrans...    30   5.8  
>sp|Q8BH59|CMC1_MOUSE Calcium-binding mitochondrial carrier protein Aralar1
           (Mitochondrial aspartate glutamate carrier 1) (Solute
           carrier family 25 member 12)
          Length = 677

 Score = 99.4 bits (246), Expect = 8e-21
 Identities = 51/74 (68%), Positives = 60/74 (81%), Gaps = 3/74 (4%)
 Frame = +1

Query: 4   QFGVTLFSYEMLQRMFYVDFGGRKLSGHSLPT---RIEELLPSNPDHIGGYKLAQATFEG 174
           QFGVTL +YE+LQR FY+DFGG K SG S PT   RI +L P+NPDHIGGY+LA ATF G
Sbjct: 590 QFGVTLVTYELLQRWFYIDFGGLKPSG-SEPTPKSRIADLPPANPDHIGGYRLATATFAG 648

Query: 175 IESKFGLCLPKYKN 216
           IE+KFGL LPK+K+
Sbjct: 649 IENKFGLYLPKFKS 662
>sp|O75746|CMC1_HUMAN Calcium-binding mitochondrial carrier protein Aralar1
           (Mitochondrial aspartate glutamate carrier 1) (Solute
           carrier family 25 member 12)
          Length = 678

 Score = 96.7 bits (239), Expect = 5e-20
 Identities = 50/74 (67%), Positives = 59/74 (79%), Gaps = 3/74 (4%)
 Frame = +1

Query: 4   QFGVTLFSYEMLQRMFYVDFGGRKLSGHSLPT---RIEELLPSNPDHIGGYKLAQATFEG 174
           QFGVTL  YE+LQR FY+DFGG K +G S PT   RI +L P+NPDHIGGY+LA ATF G
Sbjct: 590 QFGVTLAHYEVLQRWFYIDFGGLKPAG-SEPTPKSRIADLPPANPDHIGGYRLATATFAG 648

Query: 175 IESKFGLCLPKYKN 216
           IE+KFGL LPK+K+
Sbjct: 649 IENKFGLYLPKFKS 662
>sp|Q9UJS0|CMC2_HUMAN Calcium-binding mitochondrial carrier protein Aralar2
           (Mitochondrial aspartate glutamate carrier 2) (Solute
           carrier family 25 member 13) (Citrin)
          Length = 675

 Score = 92.8 bits (229), Expect = 7e-19
 Identities = 48/80 (60%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
 Frame = +1

Query: 4   QFGVTLFSYEMLQRMFYVDFGGRKLSGHSLPTRIEELLPS-NPDHIGGYKLAQATFEGIE 180
           QFGVTL +YE+LQR FY+DFGG K  G     +    LP+ NPDH+GGYKLA ATF GIE
Sbjct: 592 QFGVTLLTYELLQRWFYIDFGGVKPMGSEPVPKSRINLPAPNPDHVGGYKLAVATFAGIE 651

Query: 181 SKFGLCLPKYKNSTSITSAI 240
           +KFGL LP +K S S + AI
Sbjct: 652 NKFGLYLPLFKPSVSTSKAI 671
>sp|Q8HXW2|CMC2_MACFA Calcium-binding mitochondrial carrier protein Aralar2
           (Mitochondrial aspartate glutamate carrier 2) (Solute
           carrier family 25 member 13) (Citrin)
          Length = 674

 Score = 90.9 bits (224), Expect = 3e-18
 Identities = 47/80 (58%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
 Frame = +1

Query: 4   QFGVTLFSYEMLQRMFYVDFGGRKLSGHSLPTRIEELLPS-NPDHIGGYKLAQATFEGIE 180
           QFGVTL +YE+LQR FY+DFGG K  G     +    LP+ NPDH+GGYKLA ATF GIE
Sbjct: 591 QFGVTLLTYELLQRWFYIDFGGVKPMGSEPVPKSRINLPAPNPDHVGGYKLAVATFAGIE 650

Query: 181 SKFGLCLPKYKNSTSITSAI 240
           +KFGL LP +K S   + AI
Sbjct: 651 NKFGLYLPLFKPSVPTSEAI 670
>sp|Q9QXX4|CMC2_MOUSE Calcium-binding mitochondrial carrier protein Aralar2
           (Mitochondrial aspartate glutamate carrier 2) (Solute
           carrier family 25 member 13) (Citrin)
          Length = 676

 Score = 90.5 bits (223), Expect = 4e-18
 Identities = 47/75 (62%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
 Frame = +1

Query: 4   QFGVTLFSYEMLQRMFYVDFGGRKLSGHSLPTRIEELLPS-NPDHIGGYKLAQATFEGIE 180
           QFGVTL +YE+LQR FYVDFGG K  G     +    LP+ NPDH+GGYKLA ATF GIE
Sbjct: 593 QFGVTLLTYELLQRWFYVDFGGVKPVGSEPVPKSRITLPAPNPDHVGGYKLAVATFAGIE 652

Query: 181 SKFGLCLPKYKNSTS 225
           +KFGL LP +K S S
Sbjct: 653 NKFGLYLPLFKPSAS 667
>sp|Q21153|CMC1_CAEEL Probable calcium-binding mitochondrial carrier K02F3.2
          Length = 702

 Score = 90.5 bits (223), Expect = 4e-18
 Identities = 44/74 (59%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
 Frame = +1

Query: 4   QFGVTLFSYEMLQRMFYVDFGGRKLSGHSLPTR--IEELLPSNPDHIGGYKLAQATFEGI 177
           QF VTL +YE+LQR+FYVDF G + +G  L T   I++   +NPDH+GGYKLA ATF GI
Sbjct: 628 QFAVTLLTYEVLQRLFYVDFAGSRPTGSELATTKTIQDESSTNPDHVGGYKLAAATFSGI 687

Query: 178 ESKFGLCLPKYKNS 219
           E KFGL LPK++ S
Sbjct: 688 EHKFGLFLPKFETS 701
>sp|Q9VA73|CMC1_DROME Calcium-binding mitochondrial carrier Aralar1
          Length = 695

 Score = 79.0 bits (193), Expect = 1e-14
 Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 7/84 (8%)
 Frame = +1

Query: 4   QFGVTLFSYEMLQRMFYVDFGGRKLSG---HSLPTRIEELLPS----NPDHIGGYKLAQA 162
           QFGVTL +YE+LQR+FYVDFGG +  G   H + T +E+   S    N DHIGGY+ A  
Sbjct: 605 QFGVTLVTYELLQRLFYVDFGGTQPKGSEAHKITTPLEQAAASVTTENVDHIGGYRAAVP 664

Query: 163 TFEGIESKFGLCLPKYKNSTSITS 234
              G+ESKFGL LP++    +  S
Sbjct: 665 LLAGVESKFGLYLPRFGRGVTAAS 688
>sp|Q57882|Y440_METJA Hypothetical protein MJ0440
          Length = 299

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 315 FLFLIFQSFVHQQFSIFVSLYIGIFQLSIKFL 410
           FLF+  Q   H +  ++V + +GIF   +KFL
Sbjct: 161 FLFVFLQHITHLEAILYVGILVGIFYYLVKFL 192
>sp|P41023|DCDA_BACMT Diaminopimelate decarboxylase (DAP decarboxylase)
          Length = 432

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 288 CREKEMKTNRYFKNLVDSRGNTSTVLIFWQTESKFGFD 175
           C EK +KTN   +       +T   ++  Q +SKFGFD
Sbjct: 143 CSEKNVKTNILLRVTPGIEAHTHDYILTGQEDSKFGFD 180
>sp|Q7V2R3|QUEA_PROMP S-adenosylmethionine:tRNA ribosyltransferase-isomerase (Queuosine
           biosynthesis protein queA)
          Length = 374

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 20/68 (29%), Positives = 35/68 (51%)
 Frame = -2

Query: 411 QEI*LKVEKFLYKAKQK*KTVDVQKIGKLRIEIRR*KIHENCREKEMKTNRYFKNLVDSR 232
           +EI  K+E + Y   +   T+   K  K+R E R   + ++  E++  TN+Y KNL+D  
Sbjct: 8   EEIDHKLEAYDYILDE---TLIANKPSKVRHESRLMIVRDSSLEEDFTTNKYTKNLLDEL 64

Query: 231 GNTSTVLI 208
                V++
Sbjct: 65  RKGDLVVV 72
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,970,363
Number of Sequences: 369166
Number of extensions: 1384435
Number of successful extensions: 3143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3136
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5684835195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)