Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01163
(676 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8BH59|CMC1_MOUSE Calcium-binding mitochondrial carrier ... 99 8e-21
sp|O75746|CMC1_HUMAN Calcium-binding mitochondrial carrier ... 97 5e-20
sp|Q9UJS0|CMC2_HUMAN Calcium-binding mitochondrial carrier ... 93 7e-19
sp|Q8HXW2|CMC2_MACFA Calcium-binding mitochondrial carrier ... 91 3e-18
sp|Q9QXX4|CMC2_MOUSE Calcium-binding mitochondrial carrier ... 91 4e-18
sp|Q21153|CMC1_CAEEL Probable calcium-binding mitochondrial... 91 4e-18
sp|Q9VA73|CMC1_DROME Calcium-binding mitochondrial carrier ... 79 1e-14
sp|Q57882|Y440_METJA Hypothetical protein MJ0440 31 3.4
sp|P41023|DCDA_BACMT Diaminopimelate decarboxylase (DAP dec... 30 5.8
sp|Q7V2R3|QUEA_PROMP S-adenosylmethionine:tRNA ribosyltrans... 30 5.8
>sp|Q8BH59|CMC1_MOUSE Calcium-binding mitochondrial carrier protein Aralar1
(Mitochondrial aspartate glutamate carrier 1) (Solute
carrier family 25 member 12)
Length = 677
Score = 99.4 bits (246), Expect = 8e-21
Identities = 51/74 (68%), Positives = 60/74 (81%), Gaps = 3/74 (4%)
Frame = +1
Query: 4 QFGVTLFSYEMLQRMFYVDFGGRKLSGHSLPT---RIEELLPSNPDHIGGYKLAQATFEG 174
QFGVTL +YE+LQR FY+DFGG K SG S PT RI +L P+NPDHIGGY+LA ATF G
Sbjct: 590 QFGVTLVTYELLQRWFYIDFGGLKPSG-SEPTPKSRIADLPPANPDHIGGYRLATATFAG 648
Query: 175 IESKFGLCLPKYKN 216
IE+KFGL LPK+K+
Sbjct: 649 IENKFGLYLPKFKS 662
>sp|O75746|CMC1_HUMAN Calcium-binding mitochondrial carrier protein Aralar1
(Mitochondrial aspartate glutamate carrier 1) (Solute
carrier family 25 member 12)
Length = 678
Score = 96.7 bits (239), Expect = 5e-20
Identities = 50/74 (67%), Positives = 59/74 (79%), Gaps = 3/74 (4%)
Frame = +1
Query: 4 QFGVTLFSYEMLQRMFYVDFGGRKLSGHSLPT---RIEELLPSNPDHIGGYKLAQATFEG 174
QFGVTL YE+LQR FY+DFGG K +G S PT RI +L P+NPDHIGGY+LA ATF G
Sbjct: 590 QFGVTLAHYEVLQRWFYIDFGGLKPAG-SEPTPKSRIADLPPANPDHIGGYRLATATFAG 648
Query: 175 IESKFGLCLPKYKN 216
IE+KFGL LPK+K+
Sbjct: 649 IENKFGLYLPKFKS 662
>sp|Q9UJS0|CMC2_HUMAN Calcium-binding mitochondrial carrier protein Aralar2
(Mitochondrial aspartate glutamate carrier 2) (Solute
carrier family 25 member 13) (Citrin)
Length = 675
Score = 92.8 bits (229), Expect = 7e-19
Identities = 48/80 (60%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Frame = +1
Query: 4 QFGVTLFSYEMLQRMFYVDFGGRKLSGHSLPTRIEELLPS-NPDHIGGYKLAQATFEGIE 180
QFGVTL +YE+LQR FY+DFGG K G + LP+ NPDH+GGYKLA ATF GIE
Sbjct: 592 QFGVTLLTYELLQRWFYIDFGGVKPMGSEPVPKSRINLPAPNPDHVGGYKLAVATFAGIE 651
Query: 181 SKFGLCLPKYKNSTSITSAI 240
+KFGL LP +K S S + AI
Sbjct: 652 NKFGLYLPLFKPSVSTSKAI 671
>sp|Q8HXW2|CMC2_MACFA Calcium-binding mitochondrial carrier protein Aralar2
(Mitochondrial aspartate glutamate carrier 2) (Solute
carrier family 25 member 13) (Citrin)
Length = 674
Score = 90.9 bits (224), Expect = 3e-18
Identities = 47/80 (58%), Positives = 56/80 (70%), Gaps = 1/80 (1%)
Frame = +1
Query: 4 QFGVTLFSYEMLQRMFYVDFGGRKLSGHSLPTRIEELLPS-NPDHIGGYKLAQATFEGIE 180
QFGVTL +YE+LQR FY+DFGG K G + LP+ NPDH+GGYKLA ATF GIE
Sbjct: 591 QFGVTLLTYELLQRWFYIDFGGVKPMGSEPVPKSRINLPAPNPDHVGGYKLAVATFAGIE 650
Query: 181 SKFGLCLPKYKNSTSITSAI 240
+KFGL LP +K S + AI
Sbjct: 651 NKFGLYLPLFKPSVPTSEAI 670
>sp|Q9QXX4|CMC2_MOUSE Calcium-binding mitochondrial carrier protein Aralar2
(Mitochondrial aspartate glutamate carrier 2) (Solute
carrier family 25 member 13) (Citrin)
Length = 676
Score = 90.5 bits (223), Expect = 4e-18
Identities = 47/75 (62%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Frame = +1
Query: 4 QFGVTLFSYEMLQRMFYVDFGGRKLSGHSLPTRIEELLPS-NPDHIGGYKLAQATFEGIE 180
QFGVTL +YE+LQR FYVDFGG K G + LP+ NPDH+GGYKLA ATF GIE
Sbjct: 593 QFGVTLLTYELLQRWFYVDFGGVKPVGSEPVPKSRITLPAPNPDHVGGYKLAVATFAGIE 652
Query: 181 SKFGLCLPKYKNSTS 225
+KFGL LP +K S S
Sbjct: 653 NKFGLYLPLFKPSAS 667
>sp|Q21153|CMC1_CAEEL Probable calcium-binding mitochondrial carrier K02F3.2
Length = 702
Score = 90.5 bits (223), Expect = 4e-18
Identities = 44/74 (59%), Positives = 55/74 (74%), Gaps = 2/74 (2%)
Frame = +1
Query: 4 QFGVTLFSYEMLQRMFYVDFGGRKLSGHSLPTR--IEELLPSNPDHIGGYKLAQATFEGI 177
QF VTL +YE+LQR+FYVDF G + +G L T I++ +NPDH+GGYKLA ATF GI
Sbjct: 628 QFAVTLLTYEVLQRLFYVDFAGSRPTGSELATTKTIQDESSTNPDHVGGYKLAAATFSGI 687
Query: 178 ESKFGLCLPKYKNS 219
E KFGL LPK++ S
Sbjct: 688 EHKFGLFLPKFETS 701
>sp|Q9VA73|CMC1_DROME Calcium-binding mitochondrial carrier Aralar1
Length = 695
Score = 79.0 bits (193), Expect = 1e-14
Identities = 41/84 (48%), Positives = 53/84 (63%), Gaps = 7/84 (8%)
Frame = +1
Query: 4 QFGVTLFSYEMLQRMFYVDFGGRKLSG---HSLPTRIEELLPS----NPDHIGGYKLAQA 162
QFGVTL +YE+LQR+FYVDFGG + G H + T +E+ S N DHIGGY+ A
Sbjct: 605 QFGVTLVTYELLQRLFYVDFGGTQPKGSEAHKITTPLEQAAASVTTENVDHIGGYRAAVP 664
Query: 163 TFEGIESKFGLCLPKYKNSTSITS 234
G+ESKFGL LP++ + S
Sbjct: 665 LLAGVESKFGLYLPRFGRGVTAAS 688
>sp|Q57882|Y440_METJA Hypothetical protein MJ0440
Length = 299
Score = 30.8 bits (68), Expect = 3.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 315 FLFLIFQSFVHQQFSIFVSLYIGIFQLSIKFL 410
FLF+ Q H + ++V + +GIF +KFL
Sbjct: 161 FLFVFLQHITHLEAILYVGILVGIFYYLVKFL 192
>sp|P41023|DCDA_BACMT Diaminopimelate decarboxylase (DAP decarboxylase)
Length = 432
Score = 30.0 bits (66), Expect = 5.8
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 288 CREKEMKTNRYFKNLVDSRGNTSTVLIFWQTESKFGFD 175
C EK +KTN + +T ++ Q +SKFGFD
Sbjct: 143 CSEKNVKTNILLRVTPGIEAHTHDYILTGQEDSKFGFD 180
>sp|Q7V2R3|QUEA_PROMP S-adenosylmethionine:tRNA ribosyltransferase-isomerase (Queuosine
biosynthesis protein queA)
Length = 374
Score = 30.0 bits (66), Expect = 5.8
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = -2
Query: 411 QEI*LKVEKFLYKAKQK*KTVDVQKIGKLRIEIRR*KIHENCREKEMKTNRYFKNLVDSR 232
+EI K+E + Y + T+ K K+R E R + ++ E++ TN+Y KNL+D
Sbjct: 8 EEIDHKLEAYDYILDE---TLIANKPSKVRHESRLMIVRDSSLEEDFTTNKYTKNLLDEL 64
Query: 231 GNTSTVLI 208
V++
Sbjct: 65 RKGDLVVV 72
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,970,363
Number of Sequences: 369166
Number of extensions: 1384435
Number of successful extensions: 3143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3136
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5684835195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)