Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_01150
(505 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O22607|MSI4_ARATH WD-40 repeat protein MSI4 36 0.059
sp|P33537|DPOM_NEUCR Probable DNA polymerase 30 4.3
sp|P16793|UL52_HCMVA Probable major envelope glycoprotein U... 30 4.3
sp|Q06536|YFCC_CHRVI Putative tetraheme cytochrome-c type (... 30 4.3
sp|Q92824|PCSK5_HUMAN Proprotein convertase subtilisin/kexi... 29 7.3
sp|Q04592|PCSK5_MOUSE Proprotein convertase subtilisin/kexi... 29 7.3
sp|P41413|PCSK5_RAT Proprotein convertase subtilisin/kexin ... 29 7.3
sp|P11688|ITA5_MOUSE Integrin alpha-5 precursor (Fibronecti... 28 9.5
>sp|O22607|MSI4_ARATH WD-40 repeat protein MSI4
Length = 507
Score = 35.8 bits (81), Expect = 0.059
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +3
Query: 108 ANSDAPCQSFCSYYDNRAAFPLNAEIHNNCINKLSMTDKMGVPLCDWNPHDEN 266
A S Q FCS D+ +A N + K+ + DWNPHD+N
Sbjct: 299 AFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHDDN 351
>sp|P33537|DPOM_NEUCR Probable DNA polymerase
Length = 1021
Score = 29.6 bits (65), Expect = 4.3
Identities = 18/58 (31%), Positives = 24/58 (41%)
Frame = -2
Query: 225 FYRSLIIYLYNYYEFQHLMEMQLCCHNMSRNFDKERHYLHNVSNYMMDLLDCILPNEF 52
FY Y +F EM L C +DK Y HN S + ++ + IL EF
Sbjct: 340 FYDGKKSLTYYISDFISQREMLLACIKDMLKYDKHTVYCHNFSKFDINFIIKILVQEF 397
>sp|P16793|UL52_HCMVA Probable major envelope glycoprotein UL52 (HFRF1 protein)
Length = 668
Score = 29.6 bits (65), Expect = 4.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 138 CSYYDNRAAFPLNAEIHNNCINKLSMTDKMGVPLCD 245
CSYYDN L + + C N + M D++ + L D
Sbjct: 467 CSYYDNVVLRELYRRVVSYCQNNVKMVDRIQLVLAD 502
>sp|Q06536|YFCC_CHRVI Putative tetraheme cytochrome-c type (ORF1)
Length = 142
Score = 29.6 bits (65), Expect = 4.3
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -2
Query: 153 CHNMSRNFDKERHYLH--NVSNYMMDLLDCILPNEFDNK 43
CH M NF++ + LH N S DC +P E K
Sbjct: 6 CHTMQTNFEEYKESLHYKNTSGVQATCADCHVPKELGPK 44
>sp|Q92824|PCSK5_HUMAN Proprotein convertase subtilisin/kexin type 5 precursor (Proprotein
convertase PC5) (Subtilisin/kexin-like protease PC5)
(PC6) (hPC6)
Length = 913
Score = 28.9 bits (63), Expect = 7.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 72 NPKDPSYNYSHCANSDAPCQS 134
+PK PS Y HC+++ PCQS
Sbjct: 128 DPKWPSMWYMHCSDNTHPCQS 148
>sp|Q04592|PCSK5_MOUSE Proprotein convertase subtilisin/kexin type 5 precursor (Proprotein
convertase PC5) (Subtilisin/kexin-like protease PC5)
(PC6) (Subtilisin-like proprotein convertase 6) (SPC6)
Length = 1877
Score = 28.9 bits (63), Expect = 7.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 72 NPKDPSYNYSHCANSDAPCQS 134
+PK PS Y HC+++ PCQS
Sbjct: 130 DPKWPSMWYMHCSDNTHPCQS 150
>sp|P41413|PCSK5_RAT Proprotein convertase subtilisin/kexin type 5 precursor (Proprotein
convertase PC5) (Subtilisin/kexin-like protease PC5)
(rPC5) (PC6)
Length = 1877
Score = 28.9 bits (63), Expect = 7.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 72 NPKDPSYNYSHCANSDAPCQS 134
+PK PS Y HC+++ PCQS
Sbjct: 130 DPKWPSMWYMHCSDNTHPCQS 150
>sp|P11688|ITA5_MOUSE Integrin alpha-5 precursor (Fibronectin receptor alpha subunit)
(Integrin alpha-F) (VLA-5) (CD49e) [Contains: Integrin
alpha-5 heavy chain; Integrin alpha-5 light chain]
Length = 1053
Score = 28.5 bits (62), Expect = 9.5
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 153 NRAAFPLNAEIHNNC-INKLSMTDKMGVPLCDWNPHDE 263
N +FPL+ E +N +S + + P+ DWNP D+
Sbjct: 781 NVVSFPLSVEAQAQVSLNGVSKPEAVIFPVSDWNPQDQ 818
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,430,322
Number of Sequences: 369166
Number of extensions: 978774
Number of successful extensions: 2475
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2475
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3218280650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)