Planaria EST Database


DrC_01150

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01150
         (505 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O22607|MSI4_ARATH  WD-40 repeat protein MSI4                    36   0.059
sp|P33537|DPOM_NEUCR  Probable DNA polymerase                      30   4.3  
sp|P16793|UL52_HCMVA  Probable major envelope glycoprotein U...    30   4.3  
sp|Q06536|YFCC_CHRVI  Putative tetraheme cytochrome-c type (...    30   4.3  
sp|Q92824|PCSK5_HUMAN  Proprotein convertase subtilisin/kexi...    29   7.3  
sp|Q04592|PCSK5_MOUSE  Proprotein convertase subtilisin/kexi...    29   7.3  
sp|P41413|PCSK5_RAT  Proprotein convertase subtilisin/kexin ...    29   7.3  
sp|P11688|ITA5_MOUSE  Integrin alpha-5 precursor (Fibronecti...    28   9.5  
>sp|O22607|MSI4_ARATH WD-40 repeat protein MSI4
          Length = 507

 Score = 35.8 bits (81), Expect = 0.059
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 108 ANSDAPCQSFCSYYDNRAAFPLNAEIHNNCINKLSMTDKMGVPLCDWNPHDEN 266
           A S    Q FCS  D+      +A    N + K+       +   DWNPHD+N
Sbjct: 299 AFSPTSAQEFCSVGDDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHDDN 351
>sp|P33537|DPOM_NEUCR Probable DNA polymerase
          Length = 1021

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = -2

Query: 225 FYRSLIIYLYNYYEFQHLMEMQLCCHNMSRNFDKERHYLHNVSNYMMDLLDCILPNEF 52
           FY       Y   +F    EM L C      +DK   Y HN S + ++ +  IL  EF
Sbjct: 340 FYDGKKSLTYYISDFISQREMLLACIKDMLKYDKHTVYCHNFSKFDINFIIKILVQEF 397
>sp|P16793|UL52_HCMVA Probable major envelope glycoprotein UL52 (HFRF1 protein)
          Length = 668

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 138 CSYYDNRAAFPLNAEIHNNCINKLSMTDKMGVPLCD 245
           CSYYDN     L   + + C N + M D++ + L D
Sbjct: 467 CSYYDNVVLRELYRRVVSYCQNNVKMVDRIQLVLAD 502
>sp|Q06536|YFCC_CHRVI Putative tetraheme cytochrome-c type (ORF1)
          Length = 142

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -2

Query: 153 CHNMSRNFDKERHYLH--NVSNYMMDLLDCILPNEFDNK 43
           CH M  NF++ +  LH  N S       DC +P E   K
Sbjct: 6   CHTMQTNFEEYKESLHYKNTSGVQATCADCHVPKELGPK 44
>sp|Q92824|PCSK5_HUMAN Proprotein convertase subtilisin/kexin type 5 precursor (Proprotein
           convertase PC5) (Subtilisin/kexin-like protease PC5)
           (PC6) (hPC6)
          Length = 913

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 72  NPKDPSYNYSHCANSDAPCQS 134
           +PK PS  Y HC+++  PCQS
Sbjct: 128 DPKWPSMWYMHCSDNTHPCQS 148
>sp|Q04592|PCSK5_MOUSE Proprotein convertase subtilisin/kexin type 5 precursor (Proprotein
           convertase PC5) (Subtilisin/kexin-like protease PC5)
           (PC6) (Subtilisin-like proprotein convertase 6) (SPC6)
          Length = 1877

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 72  NPKDPSYNYSHCANSDAPCQS 134
           +PK PS  Y HC+++  PCQS
Sbjct: 130 DPKWPSMWYMHCSDNTHPCQS 150
>sp|P41413|PCSK5_RAT Proprotein convertase subtilisin/kexin type 5 precursor (Proprotein
           convertase PC5) (Subtilisin/kexin-like protease PC5)
           (rPC5) (PC6)
          Length = 1877

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 72  NPKDPSYNYSHCANSDAPCQS 134
           +PK PS  Y HC+++  PCQS
Sbjct: 130 DPKWPSMWYMHCSDNTHPCQS 150
>sp|P11688|ITA5_MOUSE Integrin alpha-5 precursor (Fibronectin receptor alpha subunit)
           (Integrin alpha-F) (VLA-5) (CD49e) [Contains: Integrin
           alpha-5 heavy chain; Integrin alpha-5 light chain]
          Length = 1053

 Score = 28.5 bits (62), Expect = 9.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 153 NRAAFPLNAEIHNNC-INKLSMTDKMGVPLCDWNPHDE 263
           N  +FPL+ E      +N +S  + +  P+ DWNP D+
Sbjct: 781 NVVSFPLSVEAQAQVSLNGVSKPEAVIFPVSDWNPQDQ 818
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,430,322
Number of Sequences: 369166
Number of extensions: 978774
Number of successful extensions: 2475
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2475
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3218280650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)