Planaria EST Database


DrC_01101

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01101
         (569 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O75324|SNN_HUMAN  Stannin (AG8_1)                               29   7.2  
sp|P61808|SNN_RAT  Stannin >gi|48429134|sp|P61807|SNN_MOUSE ...    29   7.2  
sp|Q12933|TRAF2_HUMAN  TNF receptor-associated factor 2 (Tum...    29   9.4  
>sp|O75324|SNN_HUMAN Stannin (AG8_1)
          Length = 88

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +2

Query: 170 CYLYLRIQRLESVQNNNEIIPNRKTNKLFIQMEWS 274
           C+ YLR+QR+   ++   I+ + +T + F+ +++S
Sbjct: 32  CWCYLRLQRISQSEDEESIVGDGETKEPFLLVQYS 66
>sp|P61808|SNN_RAT Stannin
 sp|P61807|SNN_MOUSE Stannin
          Length = 88

 Score = 29.3 bits (64), Expect = 7.2
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +2

Query: 170 CYLYLRIQRLESVQNNNEIIPNRKTNKLFIQMEWS 274
           C+ YLR+QR+   ++   I+ + +T + F+ +++S
Sbjct: 32  CWCYLRLQRISQSEDEESIVGDGETKEPFLLVQYS 66
>sp|Q12933|TRAF2_HUMAN TNF receptor-associated factor 2 (Tumor necrosis factor type 2
           receptor-associated protein 3)
          Length = 501

 Score = 28.9 bits (63), Expect = 9.4
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 6/116 (5%)
 Frame = +3

Query: 15  IKLMTSEWFYDKQNPYKMCLQ------XXXXXXXXXXXXXXCRGAFDSDLRWPCETDIVI 176
           I  + S  FY  +  YKMCL+                     +G  D+ LRWP    + +
Sbjct: 373 IPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLRWPFNQKVTL 432

Query: 177 YIYAFNDWNLSKTITKSYQIEKPTNYSFKWSGPIKISHSDLIESNLNNGCLLFCMV 344
            +    D N  + +  ++   +P   S  +  P+        + N+ +GC LFC V
Sbjct: 433 MLL---DQNNREHVIDAF---RPDVTSSSFQRPVN-------DMNIASGCPLFCPV 475
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,631,739
Number of Sequences: 369166
Number of extensions: 1128715
Number of successful extensions: 2159
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2158
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01101

  1. Dr_sW_027_L18
  2. Dr_sW_019_G13