Planarian EST Database

DrC_01038

Cluster detail
GO Category :
Consensus Sequence :
>DrC_01038 ATTTTTGTTAAACACTTACTGGGAAGACTATAACATTGGAAGTTGAGTCTTCTGATACTA TTGAAAACGTAAAGGCAAAGATTCAAGATAAAGAAGGCATTCCACCTGACCAACAACGAC TTATTTTTGCTGGTAAACAACTGGAAGATGGTCGCACATTGTCAGATTATAACATTCAAA AAGAGTCTACACTACATTTAGTTCTTCGGCTTCGTGGTGGAATTATTGAGCCCACATTAC GTGTTCTTGCTCAAAAATACAATTGCGATAAAATGATTTGTCGAAAATGTTACGCTAGAT TGCATCCTCGTGCAACTAATTGCAGAAAACGAAAATGTGGCCACACTAGCAATATTCGTC CTAAGAAGAAACTTAAGTAAATTGTTATTTTGCAATTTTTCAAATAAATAAATTGGAGTT CAAATG

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_01038
         (426 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P14792|UBIQ_CAEEL  Ubiquitin >gi|30580944|sp|P59669|UBIQ_...   138   6e-33
sp|P19848|UBIQ_COPCO  Ubiquitin                                   138   6e-33
sp|P14624|UBIQ_CHLRE  Ubiquitin                                   138   6e-33
sp|P42740|UBIQ_AGLNE  Ubiquitin                                   137   7e-33
sp|P62990|UBIQ_BOVIN  Ubiquitin >gi|51703334|sp|P62972|UBIQ_...   137   9e-33
sp|P69319|UBIQ_MAIZE  Ubiquitin >gi|71153387|sp|P0C072|UBIQ_...   137   1e-32
sp|P61864|UBIQ_YEAST  Ubiquitin >gi|59800425|sp|Q9Y848|UBIQ_...   137   1e-32
sp|P20685|UBIQ_TETPY  Ubiquitin                                   137   1e-32
sp|O46543|UBIQ_SHEEP  Ubiquitin                                   136   2e-32
sp|P42739|UBIQ_ACECL  Ubiquitin                                   136   2e-32

>sp|P14792|UBIQ_CAEEL Ubiquitin
 sp|P59669|UBIQ_GEOCY Ubiquitin
          Length = 76

 Score =  138 bits (347), Expect = 6e-33
 Identities = 70/73 (95%), Positives = 71/73 (97%)
 Frame = +3

Query: 3   FC*TLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 182
           F  TLTGKTITLEVE+SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK
Sbjct: 4   FVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63

Query: 183 ESTLHLVLRLRGG 221
           ESTLHLVLRLRGG
Sbjct: 64  ESTLHLVLRLRGG 76

>sp|P19848|UBIQ_COPCO Ubiquitin
          Length = 76

 Score =  138 bits (347), Expect = 6e-33
 Identities = 70/73 (95%), Positives = 71/73 (97%)
 Frame = +3

Query: 3   FC*TLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 182
           F  TLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK
Sbjct: 4   FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63

Query: 183 ESTLHLVLRLRGG 221
           ESTLHLVLRLRGG
Sbjct: 64  ESTLHLVLRLRGG 76

>sp|P14624|UBIQ_CHLRE Ubiquitin
          Length = 76

 Score =  138 bits (347), Expect = 6e-33
 Identities = 70/73 (95%), Positives = 71/73 (97%)
 Frame = +3

Query: 3   FC*TLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 182
           F  TLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQK
Sbjct: 4   FVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63

Query: 183 ESTLHLVLRLRGG 221
           ESTLHLVLRLRGG
Sbjct: 64  ESTLHLVLRLRGG 76

>sp|P42740|UBIQ_AGLNE Ubiquitin
          Length = 76

 Score =  137 bits (346), Expect = 7e-33
 Identities = 70/73 (95%), Positives = 70/73 (95%)
 Frame = +3

Query: 3   FC*TLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 182
           F  TLTGKTITLEVESSDTIENVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK
Sbjct: 4   FVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63

Query: 183 ESTLHLVLRLRGG 221
           ESTLHLVLRLRGG
Sbjct: 64  ESTLHLVLRLRGG 76

>sp|P62990|UBIQ_BOVIN Ubiquitin
 sp|P62972|UBIQ_XENLA Ubiquitin
 sp|P62989|UBIQ_RAT Ubiquitin
 sp|Q867C4|UBIQ_PONPY Ubiquitin
 sp|P62974|UBIQ_PIG Ubiquitin
 sp|Q867C3|UBIQ_PANTR Ubiquitin
 sp|P68204|UBIQ_OPHHA Ubiquitin
 sp|P62991|UBIQ_MOUSE Ubiquitin
 sp|P68196|UBIQ_MANSE Ubiquitin
 sp|P68199|UBIQ_ICTPU Ubiquitin
 sp|Q867C2|UBIQ_GORGO Ubiquitin
 sp|P63051|UBIQ_FELCA Ubiquitin
 sp|P62977|UBIQ_CAVPO Ubiquitin
 sp|P63049|UBIQ_CANFA Ubiquitin
 sp|Q865C5|UBIQ_CAMDR Ubiquitin
 sp|P62975|UBIQ_RABIT Ubiquitin
 sp|P62988|UBIQ_HUMAN Ubiquitin
 sp|P62976|UBIQ_CRIGR Ubiquitin
 sp|P62973|UBIQ_CHICK Ubiquitin
 sp|P68201|UBIQ_PLUXY Ubiquitin
 sp|Q8MKD1|UBIQ_HORSE Ubiquitin
 sp|P68198|UBIQ_DROME Ubiquitin
 sp|P68197|UBIQ_CERCA Ubiquitin
 sp|P68195|UBIQ_SPOFR Ubiquitin
          Length = 76

 Score =  137 bits (345), Expect = 9e-33
 Identities = 70/73 (95%), Positives = 70/73 (95%)
 Frame = +3

Query: 3   FC*TLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 182
           F  TLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK
Sbjct: 4   FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63

Query: 183 ESTLHLVLRLRGG 221
           ESTLHLVLRLRGG
Sbjct: 64  ESTLHLVLRLRGG 76

>sp|P69319|UBIQ_MAIZE Ubiquitin
 sp|P0C072|UBIQ_DESAN Ubiquitin
 sp|P69321|UBIQ_ORYSA Ubiquitin
 sp|P69326|UBIQ_WHEAT Ubiquitin
 sp|P69325|UBIQ_SOYBN Ubiquitin
 sp|P69324|UBIQ_SOLTU Ubiquitin
 sp|P69323|UBIQ_PETCR Ubiquitin
 sp|P69320|UBIQ_NICSY Ubiquitin
 sp|P69318|UBIQ_LYCES Ubiquitin
 sp|P69317|UBIQ_LUPPO Ubiquitin
 sp|P69316|UBIQ_LUPAL Ubiquitin
 sp|P69315|UBIQ_LINUS Ubiquitin
 sp|P69314|UBIQ_HORVU Ubiquitin
 sp|P69313|UBIQ_HELAN Ubiquitin
 sp|P69312|UBIQ_DAUCA Ubiquitin
 sp|P69311|UBIQ_BRARA Ubiquitin
 sp|P69310|UBIQ_AVESA Ubiquitin
 sp|P69309|UBIQ_AVEFA Ubiquitin
 sp|P69308|UBIQ_ASPOF Ubiquitin
 sp|P69322|UBIQ_PEA Ubiquitin
 sp|P59263|UBIQ_ARATH Ubiquitin
          Length = 76

 Score =  137 bits (344), Expect = 1e-32
 Identities = 69/73 (94%), Positives = 71/73 (97%)
 Frame = +3

Query: 3   FC*TLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 182
           F  TLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQK
Sbjct: 4   FVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63

Query: 183 ESTLHLVLRLRGG 221
           ESTLHLVLRLRGG
Sbjct: 64  ESTLHLVLRLRGG 76

>sp|P61864|UBIQ_YEAST Ubiquitin
 sp|Q9Y848|UBIQ_KLULA Ubiquitin
 sp|P0C014|UBIQ_SCHPO Ubiquitin
 sp|P61863|UBIQ_CRYNE Ubiquitin
 sp|P61862|UBIQ_CANAL Ubiquitin
          Length = 76

 Score =  137 bits (344), Expect = 1e-32
 Identities = 69/73 (94%), Positives = 71/73 (97%)
 Frame = +3

Query: 3   FC*TLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 182
           F  TLTGKTITLEVESSDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK
Sbjct: 4   FVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63

Query: 183 ESTLHLVLRLRGG 221
           ESTLHLVLRLRGG
Sbjct: 64  ESTLHLVLRLRGG 76

>sp|P20685|UBIQ_TETPY Ubiquitin
          Length = 76

 Score =  137 bits (344), Expect = 1e-32
 Identities = 69/73 (94%), Positives = 71/73 (97%)
 Frame = +3

Query: 3   FC*TLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 182
           F  TLTGKTITL+VE+SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK
Sbjct: 4   FVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63

Query: 183 ESTLHLVLRLRGG 221
           ESTLHLVLRLRGG
Sbjct: 64  ESTLHLVLRLRGG 76

>sp|O46543|UBIQ_SHEEP Ubiquitin
          Length = 76

 Score =  136 bits (343), Expect = 2e-32
 Identities = 69/73 (94%), Positives = 70/73 (95%)
 Frame = +3

Query: 3   FC*TLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 182
           F  TLTGKTITLEVE SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK
Sbjct: 4   FVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 63

Query: 183 ESTLHLVLRLRGG 221
           ESTLHLVLR+RGG
Sbjct: 64  ESTLHLVLRMRGG 76

>sp|P42739|UBIQ_ACECL Ubiquitin
          Length = 76

 Score =  136 bits (343), Expect = 2e-32
 Identities = 68/73 (93%), Positives = 71/73 (97%)
 Frame = +3

Query: 3   FC*TLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 182
           F  TLTGKTITLEVESSDT+ENVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQK
Sbjct: 4   FVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQK 63

Query: 183 ESTLHLVLRLRGG 221
           ESTLHLVLRLRGG
Sbjct: 64  ESTLHLVLRLRGG 76

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,894,537
Number of Sequences: 369166
Number of extensions: 810313
Number of successful extensions: 2678
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2676
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2102781030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_01038

Planaria EST Database

DrC_01038

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail