Planaria EST Database


DrC_00910

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00910
         (547 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q00916|RU17_YEAST  U1 small nuclear ribonucleoprotein 70 ...    52   9e-07
sp|Q42404|RU17_ARATH  U1 small nuclear ribonucleoprotein 70 ...    50   5e-06
sp|Q9Z1D1|IF34_MOUSE  Eukaryotic translation initiation fact...    45   9e-05
sp|O75821|IF34_HUMAN  Eukaryotic translation initiation fact...    45   9e-05
sp|Q24207|BOULE_DROME  Boule protein                               45   9e-05
sp|Q8N9W6|BOLL_HUMAN  Boule-like protein                           44   3e-04
sp|Q99181|HSH49_YEAST  HSH49 protein                               44   3e-04
sp|Q8WP23|BOLL_MACFA  Boule-like protein                           44   3e-04
sp|P31209|PABP_SCHPO  Polyadenylate-binding protein (Poly(A)...    43   4e-04
sp|Q05196|PABP5_ARATH  Polyadenylate-binding protein 5 (Poly...    43   4e-04
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog
          Length = 300

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
 Frame = +3

Query: 150 DPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYY 329
           DP  T+FI     +  E++LQ  F+   E + IR+++D I+  SK YAF+ F     +  
Sbjct: 104 DPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKM 163

Query: 330 ALEKLGNY--VILRDKRLIVEMELERILINWKP 422
           A +++G +  + ++D+  IV++E  R +  +KP
Sbjct: 164 AFKEIGVHRGIQIKDRICIVDIERGRTVKYFKP 196
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa)
           (snRNP70) (U1-70K)
          Length = 427

 Score = 49.7 bits (117), Expect = 5e-06
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 2/103 (1%)
 Frame = +3

Query: 120 EYRPNK--GVVGDPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYA 293
           +Y PN      GDP  TLF++  + E+ E  ++  F +    K + ++ D ++   K YA
Sbjct: 123 KYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYA 182

Query: 294 FVEFHSKQDAYYALEKLGNYVILRDKRLIVEMELERILINWKP 422
           F+E+   +D   A ++     I   +R++V++E  R + NW+P
Sbjct: 183 FIEYMHTRDMKAAYKQADGQKI-DGRRVLVDVERGRTVPNWRP 224
>sp|Q9Z1D1|IF34_MOUSE Eukaryotic translation initiation factor 3 subunit 4 (eIF-3 delta)
           (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42)
           (Eif3p42) (eIF3g)
          Length = 320

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 24/76 (31%), Positives = 40/76 (52%)
 Frame = +3

Query: 126 RPNKGVVGDPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEF 305
           +PN+    D  +T+ +     +TRE DLQ LF        I + +D  +G SK +AF+ F
Sbjct: 230 QPNRRA--DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287

Query: 306 HSKQDAYYALEKLGNY 353
           H ++DA  A+  +  +
Sbjct: 288 HRREDAARAIAGVSGF 303
>sp|O75821|IF34_HUMAN Eukaryotic translation initiation factor 3 subunit 4 (eIF-3 delta)
           (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42)
           (eIF3g)
          Length = 320

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 24/76 (31%), Positives = 40/76 (52%)
 Frame = +3

Query: 126 RPNKGVVGDPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEF 305
           +PN+    D  +T+ +     +TRE DLQ LF        I + +D  +G SK +AF+ F
Sbjct: 230 QPNRRA--DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287

Query: 306 HSKQDAYYALEKLGNY 353
           H ++DA  A+  +  +
Sbjct: 288 HRREDAARAIAGVSGF 303
>sp|Q24207|BOULE_DROME Boule protein
          Length = 228

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 26/79 (32%), Positives = 45/79 (56%)
 Frame = +3

Query: 165 LFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYALEKL 344
           +F+ G   +T E DL  +F      K  ++I D  +G+SK Y FV F ++Q+A   L+  
Sbjct: 35  IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEA-QRLQAD 92

Query: 345 GNYVILRDKRLIVEMELER 401
           G  V+LRD++L +   +++
Sbjct: 93  GECVVLRDRKLNIAPAIKK 111
>sp|Q8N9W6|BOLL_HUMAN Boule-like protein
          Length = 283

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
 Frame = +3

Query: 165 LFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYAL--- 335
           +F+ G D +T E DL+  F      K ++++ D  +G+SK Y FV F +++DA   L   
Sbjct: 35  IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQEA 93

Query: 336 EKLGNYVILRDKRL 377
           EKL NY   +DK+L
Sbjct: 94  EKL-NY---KDKKL 103
>sp|Q99181|HSH49_YEAST HSH49 protein
          Length = 213

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 24/78 (30%), Positives = 42/78 (53%)
 Frame = +3

Query: 150 DPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYY 329
           D  +T+++   D    +  L  LFI I     I+  +D +    + YAF+EF+++ DA Y
Sbjct: 6   DSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQY 65

Query: 330 ALEKLGNYVILRDKRLIV 383
           A++ + N V L D+ + V
Sbjct: 66  AIKIMNNTVRLYDRLIKV 83
>sp|Q8WP23|BOLL_MACFA Boule-like protein
          Length = 283

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
 Frame = +3

Query: 165 LFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYAL--- 335
           +F+ G D +T E DL+  F      K ++++ D  +G+SK Y FV F +++DA   L   
Sbjct: 35  IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQEA 93

Query: 336 EKLGNYVILRDKRL 377
           EKL NY   +DK+L
Sbjct: 94  EKL-NY---KDKKL 103
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP)
          Length = 653

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 24/71 (33%), Positives = 40/71 (56%)
 Frame = +3

Query: 159 STLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYALE 338
           ++L++   D    E  L  LF +I     IRV RD ++  S  YA+V FH+ +D   AL+
Sbjct: 80  ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139

Query: 339 KLGNYVILRDK 371
           +L NY +++ +
Sbjct: 140 EL-NYTLIKGR 149
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP
           5)
          Length = 668

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 27/73 (36%), Positives = 39/73 (53%)
 Frame = +3

Query: 153 PKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYA 332
           P S+L++   D    E  L +LF  +     +RV RDL    S  YA+V F + +DA  A
Sbjct: 43  PNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHR-SLGYAYVNFANPEDASRA 101

Query: 333 LEKLGNYVILRDK 371
           +E L NY  +RD+
Sbjct: 102 MESL-NYAPIRDR 113

 Score = 38.1 bits (87), Expect = 0.014
 Identities = 29/94 (30%), Positives = 46/94 (48%)
 Frame = +3

Query: 102 IRALYSEYRPNKGVVGDPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGIS 281
           IR + S   P+  + G  K  +FI   D       L   F +       +V  D++ G S
Sbjct: 115 IRIMLSNRDPSTRLSG--KGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVV-GRS 171

Query: 282 KQYAFVEFHSKQDAYYALEKLGNYVILRDKRLIV 383
           K Y FV+F  ++ A  A++KL N ++L DK++ V
Sbjct: 172 KGYGFVQFEKEETAQAAIDKL-NGMLLNDKQVFV 204
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,595,788
Number of Sequences: 369166
Number of extensions: 1096185
Number of successful extensions: 2992
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2985
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3783975580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00910

  1. Dr_sW_022_N09
  2. Dr_sW_002_P24