DrC_00910
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00910 (547 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 ... 52 9e-07 sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 ... 50 5e-06 sp|Q9Z1D1|IF34_MOUSE Eukaryotic translation initiation fact... 45 9e-05 sp|O75821|IF34_HUMAN Eukaryotic translation initiation fact... 45 9e-05 sp|Q24207|BOULE_DROME Boule protein 45 9e-05 sp|Q8N9W6|BOLL_HUMAN Boule-like protein 44 3e-04 sp|Q99181|HSH49_YEAST HSH49 protein 44 3e-04 sp|Q8WP23|BOLL_MACFA Boule-like protein 44 3e-04 sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)... 43 4e-04 sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 (Poly... 43 4e-04
>sp|Q00916|RU17_YEAST U1 small nuclear ribonucleoprotein 70 kDa homolog Length = 300 Score = 52.0 bits (123), Expect = 9e-07 Identities = 29/93 (31%), Positives = 53/93 (56%), Gaps = 2/93 (2%) Frame = +3 Query: 150 DPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYY 329 DP T+FI + E++LQ F+ E + IR+++D I+ SK YAF+ F + Sbjct: 104 DPYRTIFIGRLPYDLDEIELQKYFVKFGEIEKIRIVKDKITQKSKGYAFIVFKDPISSKM 163 Query: 330 ALEKLGNY--VILRDKRLIVEMELERILINWKP 422 A +++G + + ++D+ IV++E R + +KP Sbjct: 164 AFKEIGVHRGIQIKDRICIVDIERGRTVKYFKP 196
>sp|Q42404|RU17_ARATH U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70) (U1-70K) Length = 427 Score = 49.7 bits (117), Expect = 5e-06 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 2/103 (1%) Frame = +3 Query: 120 EYRPNK--GVVGDPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYA 293 +Y PN GDP TLF++ + E+ E ++ F + K + ++ D ++ K YA Sbjct: 123 KYDPNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYA 182 Query: 294 FVEFHSKQDAYYALEKLGNYVILRDKRLIVEMELERILINWKP 422 F+E+ +D A ++ I +R++V++E R + NW+P Sbjct: 183 FIEYMHTRDMKAAYKQADGQKI-DGRRVLVDVERGRTVPNWRP 224
>sp|Q9Z1D1|IF34_MOUSE Eukaryotic translation initiation factor 3 subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 45.4 bits (106), Expect = 9e-05 Identities = 24/76 (31%), Positives = 40/76 (52%) Frame = +3 Query: 126 RPNKGVVGDPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEF 305 +PN+ D +T+ + +TRE DLQ LF I + +D +G SK +AF+ F Sbjct: 230 QPNRRA--DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287 Query: 306 HSKQDAYYALEKLGNY 353 H ++DA A+ + + Sbjct: 288 HRREDAARAIAGVSGF 303
>sp|O75821|IF34_HUMAN Eukaryotic translation initiation factor 3 subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 45.4 bits (106), Expect = 9e-05 Identities = 24/76 (31%), Positives = 40/76 (52%) Frame = +3 Query: 126 RPNKGVVGDPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEF 305 +PN+ D +T+ + +TRE DLQ LF I + +D +G SK +AF+ F Sbjct: 230 QPNRRA--DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISF 287 Query: 306 HSKQDAYYALEKLGNY 353 H ++DA A+ + + Sbjct: 288 HRREDAARAIAGVSGF 303
>sp|Q24207|BOULE_DROME Boule protein Length = 228 Score = 45.4 bits (106), Expect = 9e-05 Identities = 26/79 (32%), Positives = 45/79 (56%) Frame = +3 Query: 165 LFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYALEKL 344 +F+ G +T E DL +F K ++I D +G+SK Y FV F ++Q+A L+ Sbjct: 35 IFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEA-QRLQAD 92 Query: 345 GNYVILRDKRLIVEMELER 401 G V+LRD++L + +++ Sbjct: 93 GECVVLRDRKLNIAPAIKK 111
>sp|Q8N9W6|BOLL_HUMAN Boule-like protein Length = 283 Score = 43.5 bits (101), Expect = 3e-04 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Frame = +3 Query: 165 LFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYAL--- 335 +F+ G D +T E DL+ F K ++++ D +G+SK Y FV F +++DA L Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQEA 93 Query: 336 EKLGNYVILRDKRL 377 EKL NY +DK+L Sbjct: 94 EKL-NY---KDKKL 103
>sp|Q99181|HSH49_YEAST HSH49 protein Length = 213 Score = 43.5 bits (101), Expect = 3e-04 Identities = 24/78 (30%), Positives = 42/78 (53%) Frame = +3 Query: 150 DPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYY 329 D +T+++ D + L LFI I I+ +D + + YAF+EF+++ DA Y Sbjct: 6 DSGNTVYVGNIDPRITKEQLYELFIQINPVLRIKYPKDKVLQAYQGYAFIEFYNQGDAQY 65 Query: 330 ALEKLGNYVILRDKRLIV 383 A++ + N V L D+ + V Sbjct: 66 AIKIMNNTVRLYDRLIKV 83
>sp|Q8WP23|BOLL_MACFA Boule-like protein Length = 283 Score = 43.5 bits (101), Expect = 3e-04 Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 3/74 (4%) Frame = +3 Query: 165 LFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYAL--- 335 +F+ G D +T E DL+ F K ++++ D +G+SK Y FV F +++DA L Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDR-AGVSKGYGFVTFETQEDAQKILQEA 93 Query: 336 EKLGNYVILRDKRL 377 EKL NY +DK+L Sbjct: 94 EKL-NY---KDKKL 103
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein (Poly(A)-binding protein) (PABP) Length = 653 Score = 43.1 bits (100), Expect = 4e-04 Identities = 24/71 (33%), Positives = 40/71 (56%) Frame = +3 Query: 159 STLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYALE 338 ++L++ D E L LF +I IRV RD ++ S YA+V FH+ +D AL+ Sbjct: 80 ASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALD 139 Query: 339 KLGNYVILRDK 371 +L NY +++ + Sbjct: 140 EL-NYTLIKGR 149
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP 5) Length = 668 Score = 43.1 bits (100), Expect = 4e-04 Identities = 27/73 (36%), Positives = 39/73 (53%) Frame = +3 Query: 153 PKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGISKQYAFVEFHSKQDAYYA 332 P S+L++ D E L +LF + +RV RDL S YA+V F + +DA A Sbjct: 43 PNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHR-SLGYAYVNFANPEDASRA 101 Query: 333 LEKLGNYVILRDK 371 +E L NY +RD+ Sbjct: 102 MESL-NYAPIRDR 113
Score = 38.1 bits (87), Expect = 0.014
Identities = 29/94 (30%), Positives = 46/94 (48%)
Frame = +3
Query: 102 IRALYSEYRPNKGVVGDPKSTLFIAGFDRETREVDLQNLFINICEPKCIRVIRDLISGIS 281
IR + S P+ + G K +FI D L F + +V D++ G S
Sbjct: 115 IRIMLSNRDPSTRLSG--KGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVV-GRS 171
Query: 282 KQYAFVEFHSKQDAYYALEKLGNYVILRDKRLIV 383
K Y FV+F ++ A A++KL N ++L DK++ V
Sbjct: 172 KGYGFVQFEKEETAQAAIDKL-NGMLLNDKQVFV 204
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,595,788
Number of Sequences: 369166
Number of extensions: 1096185
Number of successful extensions: 2992
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2985
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3783975580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
