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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00742
         (248 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q71ZL3|Y1476_LISMF  Hypothetical UPF0085 protein LMOf2365...    31   1.0  

>sp|Q71ZL3|Y1476_LISMF Hypothetical UPF0085 protein LMOf2365_1476
 sp|P67196|Y1494_LISIN Hypothetical UPF0085 protein lin1494
 sp|P67195|Y1457_LISMO Hypothetical UPF0085 protein lmo1457
          Length = 274

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 187 FHHLPRRIHRFHQLDDHQVLEDLFEVVVV 101
           F   P+ IHRFH +D   ++E++ ++V V
Sbjct: 28  FGQTPKFIHRFHHVDSSHMIEEIVDLVAV 56

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,012,620
Number of Sequences: 369166
Number of extensions: 118954
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 68,354,980
effective HSP length: 53
effective length of database: 58,564,025
effective search space used: 1698356725
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_019_F23
2. Dr_sW_019_B10
3. Dr_sW_013_D04
4. Dr_sW_003_F04
5. Dr_sW_015_A03
6. Dr_sW_001_H18
7. Dr_sW_019_E23
8. Dr_sW_023_H22