Planaria EST Database

DrC_00443

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00443
         (927 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P11833|TBB_PARLI  Tubulin beta chain (Beta tubulin)            299   7e-81
sp|P30883|TBB4_XENLA  Tubulin beta-4 chain                        299   7e-81
sp|P02554|TBB_PIG  Tubulin beta chain                             299   7e-81
sp|P68372|TBBX_MOUSE  Tubulin beta-? chain >gi|55977480|sp|P...   299   7e-81
sp|P18700|TBB_STRPU  Tubulin beta chain (Beta tubulin)            299   7e-81
sp|Q7JJU6|TBB2_PANTR  Tubulin beta-2 chain >gi|56754798|sp|P...   298   1e-80
sp|P32882|TBB2_CHICK  Tubulin beta-2 chain (Beta-tubulin cla...   298   1e-80
sp|P09203|TBB1_CHICK  Tubulin beta-1 chain (Beta-tubulin cla...   298   1e-80
sp|Q91240|TBB_PSEAM  Tubulin beta chain (Beta tubulin)            298   2e-80
sp|Q24560|TBB1_DROME  Tubulin beta-1 chain (Beta-1 tubulin)       297   2e-80

>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
          Length = 447

 Score =  299 bits (766), Expect = 7e-81
 Identities = 144/150 (96%), Positives = 148/150 (98%)
 Frame = +3

Query: 81  FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 260
           +RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSY 340

Query: 261 FVEWIPNNAKTAVCDIPPRGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 440
           FVEWIPNN KTAVCDIPPRGLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400

Query: 441 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 530
           EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
          Length = 445

 Score =  299 bits (766), Expect = 7e-81
 Identities = 144/150 (96%), Positives = 148/150 (98%)
 Frame = +3

Query: 81  FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 260
           +RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSY 340

Query: 261 FVEWIPNNAKTAVCDIPPRGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 440
           FVEWIPNN KTAVCDIPPRGLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400

Query: 441 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 530
           EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

>sp|P02554|TBB_PIG Tubulin beta chain
          Length = 445

 Score =  299 bits (766), Expect = 7e-81
 Identities = 144/150 (96%), Positives = 148/150 (98%)
 Frame = +3

Query: 81  FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 260
           +RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSY 340

Query: 261 FVEWIPNNAKTAVCDIPPRGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 440
           FVEWIPNN KTAVCDIPPRGLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400

Query: 441 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 530
           EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
 sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
          Length = 445

 Score =  299 bits (766), Expect = 7e-81
 Identities = 144/150 (96%), Positives = 148/150 (98%)
 Frame = +3

Query: 81  FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 260
           +RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSY 340

Query: 261 FVEWIPNNAKTAVCDIPPRGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 440
           FVEWIPNN KTAVCDIPPRGLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400

Query: 441 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 530
           EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

>sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin)
          Length = 292

 Score =  299 bits (766), Expect = 7e-81
 Identities = 144/150 (96%), Positives = 148/150 (98%)
 Frame = +3

Query: 81  FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 260
           +RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 126 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSY 185

Query: 261 FVEWIPNNAKTAVCDIPPRGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 440
           FVEWIPNN KTAVCDIPPRGLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 186 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 245

Query: 441 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 530
           EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 246 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 275

>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
 sp|P69895|TBB2_MACMU Tubulin beta-2 chain
 sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
 sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
 sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
 sp|P69897|TBB5_RAT Tubulin beta-5 chain
 sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
           tubulin)
          Length = 444

 Score =  298 bits (763), Expect = 1e-80
 Identities = 143/150 (95%), Positives = 149/150 (99%)
 Frame = +3

Query: 81  FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 260
           +RALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSY 340

Query: 261 FVEWIPNNAKTAVCDIPPRGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 440
           FVEWIPNN KTAVCDIPPRGLKM+VTFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400

Query: 441 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 530
           EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
          Length = 445

 Score =  298 bits (763), Expect = 1e-80
 Identities = 143/150 (95%), Positives = 148/150 (98%)
 Frame = +3

Query: 81  FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 260
           +RALTVPELTQQMFD+KNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSY 340

Query: 261 FVEWIPNNAKTAVCDIPPRGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 440
           FVEWIPNN KTAVCDIPPRGLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400

Query: 441 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 530
           EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

>sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin class-I)
          Length = 445

 Score =  298 bits (763), Expect = 1e-80
 Identities = 143/150 (95%), Positives = 148/150 (98%)
 Frame = +3

Query: 81  FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 260
           +RALTVPELTQQMFD+KNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSY 340

Query: 261 FVEWIPNNAKTAVCDIPPRGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 440
           FVEWIPNN KTAVCDIPPRGLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400

Query: 441 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 530
           EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
          Length = 445

 Score =  298 bits (762), Expect = 2e-80
 Identities = 144/150 (96%), Positives = 148/150 (98%)
 Frame = +3

Query: 81  FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 260
           +RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSSY
Sbjct: 281 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSY 340

Query: 261 FVEWIPNNAKTAVCDIPPRGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 440
           FVEWIPNN KTAVCDIPPRGLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRMSEQFTAMFRRKAFLHWYTG 400

Query: 441 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 530
           EGMDEMEFTEAESNMNDLVSEYQQYQDATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 430

>sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin)
          Length = 447

 Score =  297 bits (761), Expect = 2e-80
 Identities = 142/150 (94%), Positives = 148/150 (98%)
 Frame = +3

Query: 81  FRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAMFRGRMSMKEVDEQMLNVQNKNSSY 260
           +RALTVPELTQQMFDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLN+QNKNSSY
Sbjct: 281 YRALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSY 340

Query: 261 FVEWIPNNAKTAVCDIPPRGLKMSVTFIGNSTSIQELFKRVSEQFTAMFRRKAFLHWYTG 440
           FVEWIPNN KTAVCDIPPRGLKMS TFIGNST+IQELFKR+SEQFTAMFRRKAFLHWYTG
Sbjct: 341 FVEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTG 400

Query: 441 EGMDEMEFTEAESNMNDLVSEYQQYQDATA 530
           EGMDEMEFTEAESNMNDLVSEYQQYQ+ATA
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQEATA 430

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,243,845
Number of Sequences: 369166
Number of extensions: 1606560
Number of successful extensions: 3966
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3836
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9510757740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00443

  1. Dr_sW_011_K16
  2. Dr_sW_005_I07
  3. Dr_sW_009_N12