Planaria EST Database

DrC_00433

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00433
         (701 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40720|FUMA_SALTY  Fumarate hydratase class I, aerobic (F...   140   2e-33
sp|P0AC33|FUMA_ECOLI  Fumarate hydratase class I, aerobic (F...   140   3e-33
sp|Q8X4P8|FUMA_ECO57  Fumarate hydratase class I, aerobic (F...   140   3e-33
sp|P14407|FUMB_ECOLI  Fumarate hydratase class I, anaerobic ...   140   4e-33
sp|Q58034|FUMB_METJA  Putative fumarate hydratase beta subun...    59   2e-08
sp|Q04718|FUMA_BACST  Fumarate hydratase class I, aerobic (F...    56   8e-08
sp|P0AC37|TTDB_SHIFL  L(+)-tartrate dehydratase beta subunit...    43   0.001
sp|Q8XBK5|TTDB_ECO57  L(+)-tartrate dehydratase beta subunit...    43   0.001
sp|Q00273|VP2_EHDV1  Outer capsid protein VP2                      32   1.2  

>sp|P40720|FUMA_SALTY Fumarate hydratase class I, aerobic (Fumarase)
          Length = 580

 Score =  140 bits (354), Expect = 2e-33
 Identities = 66/83 (79%), Positives = 77/83 (92%)
 Frame = +2

Query: 2   SLIMLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEYEELGMEAIWRV 181
           S+IMLAKGNRS+QVT+AC K+GGFYLGSIGGPAAVLAQ  IK++E VEY ELGMEAIW++
Sbjct: 457 SMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKRLECVEYPELGMEAIWKI 516

Query: 182 EVENFPAFIVVDDKGNDFFQEWQ 250
           EVE+FPAFI+VDDKGNDFFQ+ Q
Sbjct: 517 EVEDFPAFILVDDKGNDFFQQIQ 539

>sp|P0AC33|FUMA_ECOLI Fumarate hydratase class I, aerobic (Fumarase)
 sp|P0AC34|FUMA_ECOL6 Fumarate hydratase class I, aerobic (Fumarase)
          Length = 548

 Score =  140 bits (353), Expect = 3e-33
 Identities = 66/84 (78%), Positives = 77/84 (91%)
 Frame = +2

Query: 2   SLIMLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEYEELGMEAIWRV 181
           S+IMLAKGNRS+QVT+AC K+GGFYLGSIGGPAAVLAQ  IK +E VEY ELGMEAIW++
Sbjct: 457 SMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPELGMEAIWKI 516

Query: 182 EVENFPAFIVVDDKGNDFFQEWQV 253
           EVE+FPAFI+VDDKGNDFFQ+ Q+
Sbjct: 517 EVEDFPAFILVDDKGNDFFQQIQL 540

>sp|Q8X4P8|FUMA_ECO57 Fumarate hydratase class I, aerobic (Fumarase)
          Length = 548

 Score =  140 bits (353), Expect = 3e-33
 Identities = 66/84 (78%), Positives = 77/84 (91%)
 Frame = +2

Query: 2   SLIMLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEYEELGMEAIWRV 181
           S+IMLAKGNRS+QVT+AC K+GGFYLGSIGGPAAVLAQ  IK +E VEY ELGMEAIW++
Sbjct: 457 SMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPELGMEAIWKI 516

Query: 182 EVENFPAFIVVDDKGNDFFQEWQV 253
           EVE+FPAFI+VDDKGNDFFQ+ Q+
Sbjct: 517 EVEDFPAFILVDDKGNDFFQQIQL 540

>sp|P14407|FUMB_ECOLI Fumarate hydratase class I, anaerobic (Fumarase)
          Length = 548

 Score =  140 bits (352), Expect = 4e-33
 Identities = 65/81 (80%), Positives = 75/81 (92%)
 Frame = +2

Query: 2   SLIMLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEYEELGMEAIWRV 181
           S+IMLAKGNRS+QVT+ACHK+GGFYLGSIGGPAAVLAQ  IK +E V Y ELGMEAIW++
Sbjct: 457 SMIMLAKGNRSQQVTDACHKHGGFYLGSIGGPAAVLAQQSIKHLECVAYPELGMEAIWKI 516

Query: 182 EVENFPAFIVVDDKGNDFFQE 244
           EVE+FPAFI+VDDKGNDFFQ+
Sbjct: 517 EVEDFPAFILVDDKGNDFFQQ 537

>sp|Q58034|FUMB_METJA Putative fumarate hydratase beta subunit (Fumarase)
          Length = 195

 Score = 58.5 bits (140), Expect = 2e-08
 Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 3/81 (3%)
 Frame = +2

Query: 11  MLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEY-EELGM-EAIWRVE 184
           ++ KG   K++ +    YG  YL + GG AA+LA N +K+V+ V + +ELGM EA+W +E
Sbjct: 101 IVGKGGMKKELLKTFEDYGVVYLAAPGGCAALLA-NSVKRVDNVYFLDELGMPEAVWELE 159

Query: 185 VENF-PAFIVVDDKGNDFFQE 244
           V NF P  + +D  GN  ++E
Sbjct: 160 VNNFGPLIVAMDSHGNSIYEE 180

>sp|Q04718|FUMA_BACST Fumarate hydratase class I, aerobic (Fumarase)
          Length = 514

 Score = 56.2 bits (134), Expect = 8e-08
 Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
 Frame = +2

Query: 11  MLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEYEELGM-EAIWRVEV 187
           ++ KG   ++  +A  ++GG YL +IGG A   A +CI+ VE V+  E G+ EA+W + V
Sbjct: 419 VMGKGGMGQKTLQALKEHGGVYLNAIGGAAQYYA-DCIEAVEGVDLLEFGIPEAMWHLRV 477

Query: 188 ENFPAFIVVDDKGNDFFQE 244
           ++F A + +D  GN   ++
Sbjct: 478 KDFTAVVTMDSHGNSLHED 496

>sp|P0AC37|TTDB_SHIFL L(+)-tartrate dehydratase beta subunit (L-TTD beta)
 sp|P0AC35|TTDB_ECOLI L(+)-tartrate dehydratase beta subunit (L-TTD beta)
 sp|P0AC36|TTDB_ECOL6 L(+)-tartrate dehydratase beta subunit (L-TTD beta)
          Length = 201

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = +2

Query: 8   IMLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEYEELGM-EAIWRVE 184
           +++ KG       E C K+   ++    G  AVLA   ++++E V + ELGM E++W   
Sbjct: 98  LVVGKGGMGPLTEEGCQKFKALHVIFPAG-CAVLAATQVEEIEEVHWTELGMPESLWVCR 156

Query: 185 VENF-PAFIVVDDKGNDFFQE 244
           V+ F P  + +D  GN+   E
Sbjct: 157 VKEFGPLIVSIDTHGNNLIAE 177

>sp|Q8XBK5|TTDB_ECO57 L(+)-tartrate dehydratase beta subunit (L-TTD beta)
          Length = 201

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
 Frame = +2

Query: 8   IMLAKGNRSKQVTEACHKYGGFYLGSIGGPAAVLAQNCIKKVEVVEYEELGM-EAIWRVE 184
           +++ KG       E C K+   ++    G  AVLA   ++++E V + ELGM E++W   
Sbjct: 98  LVVGKGGMGPLTEEGCQKFKALHVIFPAG-CAVLAATQVEEIEEVHWTELGMPESLWVCR 156

Query: 185 VENF-PAFIVVDDKGNDFFQE 244
           V+ F P  + +D  GN+   E
Sbjct: 157 VKEFGPLIVSIDTHGNNLIAE 177

>sp|Q00273|VP2_EHDV1 Outer capsid protein VP2
          Length = 971

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +2

Query: 557 LYFDKNCYRALSTILNITNNFIIYCLII 640
           LY DK CY+  S ILN+ + F + C +I
Sbjct: 664 LYLDKECYKKESLILNLRSIFSLICFLI 691

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,790,148
Number of Sequences: 369166
Number of extensions: 1484685
Number of successful extensions: 4174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4165
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6122130210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00433

  1. Dr_sW_011_G09
  2. Dr_sW_019_D20