Planaria EST Database

DrC_00430

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00430
         (1211 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O75095|EGFL3_HUMAN  Multiple EGF-like-domain protein 3 pr...    38   0.051
sp|O88281|EGFL3_RAT  Multiple EGF-like-domain protein 3 prec...    35   0.33 
sp|Q8VHS2|CRUM1_MOUSE  Crumbs protein homolog 1 precursor          34   0.97 
sp|Q3LI77|KR134_HUMAN  Keratin-associated protein 13-4             33   1.6  
sp|Q5K651|SAMD9_HUMAN  Sterile alpha motif domain containing...    32   2.8  
sp|Q80V70|EGFL3_MOUSE  Multiple EGF-like-domain protein 3          32   3.7  
sp|O18735|ERBB2_CANFA  Receptor tyrosine-protein kinase erbB...    31   8.2  
sp|P46213|SYI_THEMA  Isoleucyl-tRNA synthetase (Isoleucine--...    31   8.2  
sp|Q60553|ERBB2_MESAU  Receptor tyrosine-protein kinase erbB...    31   8.2  

>sp|O75095|EGFL3_HUMAN Multiple EGF-like-domain protein 3 precursor (Multiple epidermal
           growth factor-like domains 6)
          Length = 1229

 Score = 38.1 bits (87), Expect = 0.051
 Identities = 25/84 (29%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
 Frame = +2

Query: 488 GGNCEHPSVNFTFG-GVYQVCDGPAGPSYSQVNPLTGSNSCPKGFSSVKLHSGLIRCDTS 664
           G +CE       +G G  ++C  PA    ++ +P TG+  C  GF          RC   
Sbjct: 661 GEDCEADCPEGRWGLGCQEIC--PACQHAARCDPETGACLCLPGFVGS-------RCQDV 711

Query: 665 CSGWWFWRHCDTRCSYFTTYWCYP 736
           C   W+   C TRCS      C+P
Sbjct: 712 CPAGWYGPSCQTRCSCANDGHCHP 735


 Score = 32.3 bits (72), Expect = 2.8
 Identities = 25/82 (30%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
 Frame = +2

Query: 581  NPLTGSNSCPKGFSSVKLHSGLIRCDTSCSGWWFWRHCDTRCSYFTTYWCYPNAVGENHN 760
            +P TG   CP G++  K       C + C   WF   C  RCS      C P A   +  
Sbjct: 907  DPHTGRCLCPAGWTGDK-------CQSPCLRGWFGEACAQRCS------CPPGAACHHVT 953

Query: 761  -------GYQFGGIKQGNCPIG 805
                   G+   G +QG CP G
Sbjct: 954  GACRCPPGFTGSGCEQG-CPPG 974

>sp|O88281|EGFL3_RAT Multiple EGF-like-domain protein 3 precursor (Multiple epidermal
           growth factor-like domains 6)
          Length = 1574

 Score = 35.4 bits (80), Expect = 0.33
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = +2

Query: 530 GVYQVCDGPAGPSYSQVNPLTGSNSCPKGFSSVKLHSGLIRCDTSCSGWWFWRHCDTRCS 709
           G  ++C  PA    +  NP TG+  C  GF          RC  +CS  W+   C  RC+
Sbjct: 785 GCQEIC--PACEHGASCNPETGTCLCLPGFVGS-------RCQDTCSAGWYGTGCQIRCA 835

Query: 710 YFTTYWCYP 736
                 C P
Sbjct: 836 CANDGHCDP 844


 Score = 31.6 bits (70), Expect = 4.8
 Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
 Frame = +2

Query: 488  GGNCEHPSVNFTFG-GVYQVCDGPAGPSYSQVNPLTGSNSCPKGFSSVKLHSGLIRCDTS 664
            G  C+   V+ TFG    + C    G S   V   TG+  CP G+           C+ +
Sbjct: 1116 GDKCQSSCVSGTFGVHCEEHCACRKGASCHHV---TGACFCPPGWRGP-------HCEQA 1165

Query: 665  CSGWWFWRHCDTRCSYFTTYWCY 733
            C   WF   C  RC   T   C+
Sbjct: 1166 CPRGWFGEACAQRCLCPTNASCH 1188


 Score = 31.2 bits (69), Expect = 6.3
 Identities = 26/79 (32%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
 Frame = +2

Query: 581 NPLTGSNSCPKGFSSVKLHSGLIRCDTSCSGWWFWRHCDTRCSYFTTYWCYPNAVGENHN 760
           NP  GS SC  GF          RC   C   +F   C  RC+      C P   GE   
Sbjct: 669 NPKDGSCSCKAGFQGE-------RCQAECESGFFGPGCRHRCTCQPGVACDP-VSGECRT 720

Query: 761 ----GYQFGGIKQGNCPIG 805
               GYQ     Q  CP+G
Sbjct: 721 QCPPGYQGEDCGQ-ECPVG 738


 Score = 30.8 bits (68), Expect = 8.2
 Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 3/109 (2%)
 Frame = +2

Query: 488  GGNCEHPSVNFTFG-GVYQVCDGPAGPSYSQVNPLTGSNSCPKGFSSVKLHSGLIRCDTS 664
            G +CE       FG    Q C  P   S   V   TG   CP GF+        + C+ +
Sbjct: 1159 GPHCEQACPRGWFGEACAQRCLCPTNASCHHV---TGECRCPPGFTG-------LSCEQA 1208

Query: 665  CSGWWFWRHCDTRCSYFTTYW-CYP-NAVGENHNGYQFGGIKQGNCPIG 805
            C    F + C+  C      W C P + V     GY   G  Q  CP G
Sbjct: 1209 CQPGTFGKDCEHLCQCPGETWACDPASGVCTCAAGYHGTGCLQ-RCPSG 1256

>sp|Q8VHS2|CRUM1_MOUSE Crumbs protein homolog 1 precursor
          Length = 1405

 Score = 33.9 bits (76), Expect = 0.97
 Identities = 55/226 (24%), Positives = 83/226 (36%), Gaps = 16/226 (7%)
 Frame = +2

Query: 434  KGCLDFTSPNFNSDANVDGGNCEHPSV-NFTFGGVYQVCDGPAGPSYSQVNPLTGSNSCP 610
            K C D   P F+S         + P   NF       +C  P  P YS +N  T +NSC 
Sbjct: 64   KDCEDLKDPCFSSPCQGIATCVKIPGEGNF-------LCQCP--PGYSGLNCETATNSCG 114

Query: 611  KGFSSVKLHSGLIRCDTS-----CSGWWFWRHCDTRCSYFTTYWCYPNAVGENH-NGYQF 772
                ++  H G  R D       C   +  R C+T  +   +  C+  A+ ++  NGY  
Sbjct: 115  ---GNLCQHGGTCRKDPEHPVCICPPGYAGRFCETDHNECASSPCHNGAMCQDGINGYSC 171

Query: 773  GGIKQGNCPIGYISLKVGLSVEICVTIDNDPNNPFAIKFGGLFSC-------SVGNPLAK 931
                   C  GY      L V+ CV+ D   N    +   G ++C        V   L  
Sbjct: 172  ------FCVPGYQGRHCDLEVDECVS-DPCKNEAVCLNEIGRYTCVCPQEFSGVNCELEI 224

Query: 932  EFVKGKPKLSSSKMMDLV-YWQKTCAPGYI-SHIASIEQGCQISYC 1063
            +  + +P L  +   D    +   CAPG++  H       C+   C
Sbjct: 225  DECRSQPCLHGATCQDAPGGYSCDCAPGFLGEHCELSVNECESQPC 270

>sp|Q3LI77|KR134_HUMAN Keratin-associated protein 13-4
          Length = 160

 Score = 33.1 bits (74), Expect = 1.6
 Identities = 27/96 (28%), Positives = 39/96 (40%)
 Frame = +2

Query: 539 QVCDGPAGPSYSQVNPLTGSNSCPKGFSSVKLHSGLIRCDTSCSGWWFWRHCDTRCSYFT 718
           + C  PA    S   P T    CP              C T+CSG   +R    R   + 
Sbjct: 53  KTCWEPASCQKSCYRPRTSILCCP--------------CQTTCSGSLGFRSSSCRSQGYG 98

Query: 719 TYWCYPNAVGENHNGYQFGGIKQGNCPIGYISLKVG 826
           +  CY  ++G   +G++F  +K G C  G+ SL  G
Sbjct: 99  SRCCY--SLGNGSSGFRF--LKYGGC--GFPSLSYG 128

>sp|Q5K651|SAMD9_HUMAN Sterile alpha motif domain containing protein 9
          Length = 1589

 Score = 32.3 bits (72), Expect = 2.8
 Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = +2

Query: 2    HVIRSIDAGAILSKTDALKSTYVKKLNS--DTTTISVSATASFLNLFGMSAKYSTQSSQT 175
            +V+R+I  G  +   +A   +++  LNS    TTIS+S    FL +    A + T+  + 
Sbjct: 899  NVVRNILKGQNIFTKEAKLFSFLALLNSYVPDTTISLSQCEKFLGIGNKKAFWGTEKFED 958

Query: 176  QIDEYNTNVARTHIDTVG 229
            ++  Y+T + +T +   G
Sbjct: 959  KMGTYSTILIKTEVIECG 976

>sp|Q80V70|EGFL3_MOUSE Multiple EGF-like-domain protein 3
          Length = 656

 Score = 32.0 bits (71), Expect = 3.7
 Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 1/125 (0%)
 Frame = +2

Query: 437 GCLDFTSPNFNSDANVDGGNCEHPSVNFTFG-GVYQVCDGPAGPSYSQVNPLTGSNSCPK 613
           G  D  + +    A   G  C+ P V+  FG    + C    G +   V   TG+  CP 
Sbjct: 181 GTCDRLTGHCRCPAGWTGDKCQSPCVSGMFGVHCEEHCACRKGATCHHV---TGACLCPP 237

Query: 614 GFSSVKLHSGLIRCDTSCSGWWFWRHCDTRCSYFTTYWCYPNAVGENHNGYQFGGIKQGN 793
           G+           C+ +C   WF   C  RC       C P A   + +G       + +
Sbjct: 238 GWRGS-------HCEQACPRGWFGEACAQRCH------CPPGASCHHVSG-------ECH 277

Query: 794 CPIGY 808
           CP G+
Sbjct: 278 CPPGF 282

>sp|O18735|ERBB2_CANFA Receptor tyrosine-protein kinase erbB-2 precursor (p185erbB2)
           (C-erbB-2)
          Length = 1259

 Score = 30.8 bits (68), Expect = 8.2
 Identities = 31/119 (26%), Positives = 42/119 (35%), Gaps = 1/119 (0%)
 Frame = +2

Query: 491 GNCEHPSVNFTFGGVYQVCDGPAGPSYSQVNPLTGSNSCPKGFSSVKLHSGLIRCDTSCS 670
           G+C+  +     GG  + C GP                C  G +  K HS  + C     
Sbjct: 210 GDCQSLTRTVCAGGCAR-CKGPQPTDCCH-------EQCAAGCTGPK-HSDCLACLHFNH 260

Query: 671 GWWFWRHCDTRCSYFT-TYWCYPNAVGENHNGYQFGGIKQGNCPIGYISLKVGLSVEIC 844
                 HC    +Y T T+   PN  G     Y FG     +CP  Y+S  VG    +C
Sbjct: 261 SGICELHCPALVTYNTDTFESMPNPEGR----YTFGASCVTSCPYNYLSTDVGSCTLVC 315

>sp|P46213|SYI_THEMA Isoleucyl-tRNA synthetase (Isoleucine--tRNA ligase) (IleRS)
          Length = 919

 Score = 30.8 bits (68), Expect = 8.2
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +2

Query: 257 LKEWEMSIMDNLVAIDRRGEPLYYAITPHALPDLDDGTVH---KINVLLRKAIERYYVRN 427
           L+EWE   + N V   R+G+PL+     H  P   +G +H    +N +L+  + +Y    
Sbjct: 28  LEEWEKMDLYNYVLEQRKGKPLFVL---HDGPPYANGHIHIGTALNKILKDIVVKYKTMR 84

Query: 428 G 430
           G
Sbjct: 85  G 85

>sp|Q60553|ERBB2_MESAU Receptor tyrosine-protein kinase erbB-2 precursor (p185erbB2)
           (C-erbB-2) (NEU proto-oncogene)
          Length = 1254

 Score = 30.8 bits (68), Expect = 8.2
 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
 Frame = +2

Query: 689 HCDTRCSYFT-TYWCYPNAVGENHNGYQFGGIKQGNCPIGYISLKVGLSVEIC 844
           HC    +Y T T+   PN  G     Y FG      CP  Y+S +VG    +C
Sbjct: 267 HCPALVTYNTDTFESMPNPEGR----YTFGASCVTTCPYNYLSTEVGSCTLVC 315

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 143,229,384
Number of Sequences: 369166
Number of extensions: 3247017
Number of successful extensions: 7592
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7584
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 13769178250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00430

  1. Dr_sW_011_F15
  2. Dr_sW_024_A24
  3. Dr_sW_019_P15
  4. Dr_sW_021_O18
  5. Dr_sW_010_H21