Planaria EST Database

DrC_00417

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00417
         (867 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8N3Z6|ZCHC7_HUMAN  Zinc finger CCHC domain containing pr...    49   2e-05
sp|P31634|GAG_SIVMS  Gag polyprotein [Contains: Core protein...    37   0.071
sp|P24106|GAG_HV2CA  Gag polyprotein (Pr55Gag) [Contains: Ma...    35   0.35 
sp|P24107|POL_HV2CA  Gag-Pol polyprotein (Pr160Gag-Pol) [Con...    35   0.35 
sp|P40507|YIH9_YEAST  Hypothetical 41.6 kDa protein in SDS3-...    33   1.0  
sp|P51763|RCEM_CHRVI  Reaction center protein M chain (Photo...    33   1.3  
sp|P17756|GAG_HV2D1  Gag polyprotein (Pr55Gag) [Contains: Ma...    32   1.7  
sp|Q74119|GAG_HV2KR  Gag polyprotein (Pr55Gag) [Contains: Ma...    32   1.7  
sp|Q74120|POL_HV2KR  Gag-Pol polyprotein (Pr160Gag-Pol) [Con...    32   1.7  
sp|P17757|POL_HV2D1  Gag-Pol polyprotein (Pr160Gag-Pol) [Con...    32   1.7  

>sp|Q8N3Z6|ZCHC7_HUMAN Zinc finger CCHC domain containing protein 7
          Length = 542

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
 Frame = +2

Query: 485 CPDVWRQYKYTVTPGPPVFQRFSSQNKTTVCCANCAKNGHFTEQCTRNRMRSKFLGPPPI 664
           C ++WRQY  T  PGPP   +  S+      C +CA+ GH+  +C    +      P P+
Sbjct: 318 CTEIWRQYHLTTKPGPPKKPKTPSRPSALAYCYHCAQKGHYGHECPEREV----YDPSPV 373

Query: 665 MEIIKF--DHFDIYQ 703
              I +  D ++I +
Sbjct: 374 SPFICYYDDKYEIQE 388


 Score = 31.2 bits (69), Expect = 3.9
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +2

Query: 491 DVWRQYKYTVTPGPPVFQRFSSQNKTTVCCANCAKNGHFTEQC 619
           D+  Q     TPG    QR+ S NK  +C  NC K GH ++ C
Sbjct: 215 DIEAQIANNRTPGRWT-QRYYSANKNIIC-RNCDKRGHLSKNC 255

>sp|P31634|GAG_SIVMS Gag polyprotein [Contains: Core protein p17; Core protein p24]
          Length = 510

 Score = 37.0 bits (84), Expect = 0.071
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = +2

Query: 509 KYTVTPGPPVFQRFSSQNKTTVCCANCAKNGHFTEQCTRNR 631
           K    PGP  F     Q + TV C NC K GH  +QC   R
Sbjct: 370 KEAFQPGPLPFAAAQQQGRRTVKCWNCGKEGHTAKQCKAPR 410

>sp|P24106|GAG_HV2CA Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17 (MA);
           Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid
           protein p7 (NC); Spacer peptide p1; Protein p6]
          Length = 521

 Score = 34.7 bits (78), Expect = 0.35
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 527 GPPVFQRFSSQNKTTVCCANCAKNGHFTEQCTRNR 631
           GPP     ++Q + T+ C NC K GH   QC   R
Sbjct: 374 GPPPIPFAAAQQRRTIKCWNCGKEGHSARQCRAPR 408

>sp|P24107|POL_HV2CA Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix protein p17
           (MA); Capsid protein p24 (CA); p2 spacer peptide;
           Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6
           pol); Protease (Retropepsin) (PR); Reverse
           transcriptase/ribonuclease H (p66 RT); p51 RT; p15;
           Integrase (IN)]
          Length = 1462

 Score = 34.7 bits (78), Expect = 0.35
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 527 GPPVFQRFSSQNKTTVCCANCAKNGHFTEQCTRNR 631
           GPP     ++Q + T+ C NC K GH   QC   R
Sbjct: 374 GPPPIPFAAAQQRRTIKCWNCGKEGHSARQCRAPR 408

>sp|P40507|YIH9_YEAST Hypothetical 41.6 kDa protein in SDS3-THS1 intergenic region
          Length = 360

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
 Frame = +2

Query: 485 CPDVWRQYKYTV---TPGPPVFQRFSSQNKTTVCCANCAKNGHFTEQCTRNR 631
           CP +WR Y         G   FQ        TV C NC   GHF + C   R
Sbjct: 149 CPSIWRSYLLKTKDANQGDFDFQ--------TVFCYNCGNAGHFGDDCAERR 192

>sp|P51763|RCEM_CHRVI Reaction center protein M chain (Photosynthetic reaction center M
           subunit)
          Length = 325

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 586 ICTTNCGFILTGKSLENWWSW--RHGIFILSPNIWTNLKNY 470
           + T   G +LTG  +ENW+ W  +HG+    P + T +  Y
Sbjct: 277 VITAGIGILLTGTVVENWYLWAIKHGVAPAYPEVVTAVDPY 317

>sp|P17756|GAG_HV2D1 Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17 (MA);
           Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid
           protein p7 (NC); Spacer peptide p1; Protein p6]
          Length = 521

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 509 KYTVTPGPPVFQRFSSQNKTTVCCANCAKNGHFTEQCTRNR 631
           K  +TP P  F   ++Q +  + C NC K GH  +QC   R
Sbjct: 370 KEALTPAPIPFA--AAQQRRAIRCWNCGKEGHSAKQCRAPR 408

>sp|Q74119|GAG_HV2KR Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17 (MA);
           Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid
           protein p7 (NC); Spacer peptide p1; Protein p6]
          Length = 521

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 509 KYTVTPGPPVFQRFSSQNKTTVCCANCAKNGHFTEQCTRNR 631
           K  + P P  F   ++Q + T+ C NC K+GH   QC   R
Sbjct: 370 KEALAPAPIPFA--AAQQRRTIKCWNCGKDGHSARQCRAPR 408

>sp|Q74120|POL_HV2KR Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix protein p17
           (MA); Capsid protein p24 (CA); p2 spacer peptide;
           Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6
           pol); Protease (Retropepsin) (PR); Reverse
           transcriptase/ribonuclease H (p66 RT); p51 RT; p15;
           Integrase (IN)]
          Length = 1463

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 509 KYTVTPGPPVFQRFSSQNKTTVCCANCAKNGHFTEQCTRNR 631
           K  + P P  F   ++Q + T+ C NC K+GH   QC   R
Sbjct: 370 KEALAPAPIPFA--AAQQRRTIKCWNCGKDGHSARQCRAPR 408

>sp|P17757|POL_HV2D1 Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix protein p17
           (MA); Capsid protein p24 (CA); p2 spacer peptide;
           Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6
           pol); Protease (Retropepsin) (PR); Reverse
           transcriptase/ribonuclease H (p66 RT); p51 RT; p15;
           Integrase (IN)]
          Length = 1462

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 509 KYTVTPGPPVFQRFSSQNKTTVCCANCAKNGHFTEQCTRNR 631
           K  +TP P  F   ++Q +  + C NC K GH  +QC   R
Sbjct: 370 KEALTPAPIPFA--AAQQRRAIRCWNCGKEGHSAKQCRAPR 408

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,078,051
Number of Sequences: 369166
Number of extensions: 1852030
Number of successful extensions: 4219
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4218
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00417

  1. Dr_sW_023_B12
  2. Dr_sW_011_C24