Planaria EST Database


DrC_00408

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00408
         (498 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9VU02|SMD1_DROME  Probable small nuclear ribonucleoprote...   147   1e-35
sp|P62315|SMD1_MOUSE  Small nuclear ribonucleoprotein Sm D1 ...   145   4e-35
sp|O42661|SMD1_SCHPO  Probable small nuclear ribonucleoprote...   136   2e-32
sp|Q10013|SMD1_CAEEL  Probable small nuclear ribonucleoprote...   131   1e-30
sp|Q02260|SMD1_YEAST  Small nuclear ribonucleoprotein Sm D1 ...    64   3e-10
sp|Q9UUC6|SMD3_SCHPO  Probable small nuclear ribonucleoprote...    49   9e-06
sp|Q969L4|LSM10_HUMAN  U7 snRNA-associated Sm-like protein L...    46   4e-05
sp|P38203|LSM2_YEAST  U6 snRNA-associated Sm-like protein LS...    44   3e-04
sp|Q8QZX5|LSM10_MOUSE  U7 snRNA-associated Sm-like protein L...    44   3e-04
sp|Q9Y333|LSM2_HUMAN  U6 snRNA-associated Sm-like protein LS...    44   3e-04
>sp|Q9VU02|SMD1_DROME Probable small nuclear ribonucleoprotein Sm D1 (snRNP core protein
           D1) (Sm-D1)
          Length = 124

 Score =  147 bits (372), Expect = 1e-35
 Identities = 66/93 (70%), Positives = 86/93 (92%)
 Frame = +1

Query: 1   KLVRFLMRLSHETVTIEMKNGTIVHGTVAGVDMAMNTHLRSVKLTSKNKEPINLDTFTIR 180
           KLVRFLM+LSHETVTIE+KNGT +HGT+ GVD+AMNTHL+SV++T KN++P++L+T +IR
Sbjct: 2   KLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIR 61

Query: 181 GNNIRYFILPETLPLDTMLIDDTPKVSKKKKET 279
           GNNIRYFILP++LPL+T+LIDDTPK   KKK++
Sbjct: 62  GNNIRYFILPDSLPLETLLIDDTPKSKTKKKDS 94
>sp|P62315|SMD1_MOUSE Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1)
           (Sm-D1) (Sm-D autoantigen)
 sp|P62314|SMD1_HUMAN Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1)
           (Sm-D1) (Sm-D autoantigen)
          Length = 119

 Score =  145 bits (367), Expect = 4e-35
 Identities = 66/95 (69%), Positives = 84/95 (88%)
 Frame = +1

Query: 1   KLVRFLMRLSHETVTIEMKNGTIVHGTVAGVDMAMNTHLRSVKLTSKNKEPINLDTFTIR 180
           KLVRFLM+LSHETVTIE+KNGT VHGT+ GVD++MNTHL++VK+T KN+EP+ L+T +IR
Sbjct: 2   KLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIR 61

Query: 181 GNNIRYFILPETLPLDTMLIDDTPKVSKKKKETTS 285
           GNNIRYFILP++LPLDT+L+D  PKV  KK+E  +
Sbjct: 62  GNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVA 96
>sp|O42661|SMD1_SCHPO Probable small nuclear ribonucleoprotein Sm D1 (snRNP core protein
           D1) (Sm-D1)
          Length = 117

 Score =  136 bits (343), Expect = 2e-32
 Identities = 62/92 (67%), Positives = 82/92 (89%)
 Frame = +1

Query: 1   KLVRFLMRLSHETVTIEMKNGTIVHGTVAGVDMAMNTHLRSVKLTSKNKEPINLDTFTIR 180
           KLVRFLM+L++ETV+IE+KNGTIVHGT+  VDM MNTHL++VK+T K +EP+ ++T +IR
Sbjct: 2   KLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIR 61

Query: 181 GNNIRYFILPETLPLDTMLIDDTPKVSKKKKE 276
           GNNIRY+ILP++LPLDT+LIDD+ K  +KKKE
Sbjct: 62  GNNIRYYILPDSLPLDTLLIDDSTKPKQKKKE 93
>sp|Q10013|SMD1_CAEEL Probable small nuclear ribonucleoprotein Sm D1 (snRNP core protein
           D1) (Sm-D1)
          Length = 126

 Score =  131 bits (329), Expect = 1e-30
 Identities = 62/85 (72%), Positives = 73/85 (85%)
 Frame = +1

Query: 1   KLVRFLMRLSHETVTIEMKNGTIVHGTVAGVDMAMNTHLRSVKLTSKNKEPINLDTFTIR 180
           KLVRFLM+LSHETV IE+KNGT V GT+ GVD+AMNTHLR+V +T KNKEP+ LDT +IR
Sbjct: 2   KLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIR 61

Query: 181 GNNIRYFILPETLPLDTMLIDDTPK 255
           GNNIRY ILP+ L LDT+LIDD P+
Sbjct: 62  GNNIRYIILPDPLALDTLLIDDEPR 86
>sp|Q02260|SMD1_YEAST Small nuclear ribonucleoprotein Sm D1 (snRNP core protein D1)
           (Sm-D1)
          Length = 146

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 42/108 (38%), Positives = 55/108 (50%), Gaps = 27/108 (25%)
 Frame = +1

Query: 1   KLVRFLMRLSHETVTIEMKNGTIVHGTVAGVDMAMNTHLRSVKLT--------------- 135
           KLV FL +L +E VTIE+KNGT V GT+  V   MN  L  VKLT               
Sbjct: 2   KLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIA 61

Query: 136 ------SKNKEP------INLDTFTIRGNNIRYFILPETLPLDTMLID 243
                 +  ++P       +L    IRGN IR  ILP++L LD++L+D
Sbjct: 62  MASLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVD 109
>sp|Q9UUC6|SMD3_SCHPO Probable small nuclear ribonucleoprotein Sm D3 (snRNP core protein
           D3) (Sm-D3)
          Length = 97

 Score = 48.5 bits (114), Expect = 9e-06
 Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
 Frame = +1

Query: 19  MRLSHET----VTIEMKNGTIVHGTVAGVDMAMNTHLRSVKLTSKNKEPINLDTFTIRGN 186
           ++L HET    VT+E++NG+   G +   +  MN  +R + +T+++    +LD   IRG+
Sbjct: 5   IKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRGS 64

Query: 187 NIRYFILPETL 219
           +IR+ I+P+ L
Sbjct: 65  HIRFLIVPDML 75
>sp|Q969L4|LSM10_HUMAN U7 snRNA-associated Sm-like protein LSm10
          Length = 123

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 20/78 (25%), Positives = 39/78 (50%)
 Frame = +1

Query: 4   LVRFLMRLSHETVTIEMKNGTIVHGTVAGVDMAMNTHLRSVKLTSKNKEPINLDTFTIRG 183
           L+  L  L     T+++++ ++ HG +  VD  MN  L  V  T +    + LD   + G
Sbjct: 17  LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTG 76

Query: 184 NNIRYFILPETLPLDTML 237
            N+RY  +P+ + + + +
Sbjct: 77  RNVRYVHIPDDVNITSTI 94
>sp|P38203|LSM2_YEAST U6 snRNA-associated Sm-like protein LSm2 (Small nuclear
           ribonucleoprotein D homolog SNP3)
          Length = 95

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +1

Query: 13  FLMRLSHETVTIEMKNGTIVHGTVAGVDMAMNTHLRSVKLTSKNKEPI--NLDTFTIRGN 186
           F   L  + V +E+KN   + GT+  VD  +N  L ++  T + K P   ++    IRG+
Sbjct: 6   FFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGS 65

Query: 187 NIRYFILPETLPLDTMLIDDTPK 255
            +RY  L + + +DT L+ D  +
Sbjct: 66  TVRYVYLNKNM-VDTNLLQDATR 87
>sp|Q8QZX5|LSM10_MOUSE U7 snRNA-associated Sm-like protein LSm10
          Length = 122

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 19/70 (27%), Positives = 36/70 (51%)
 Frame = +1

Query: 4   LVRFLMRLSHETVTIEMKNGTIVHGTVAGVDMAMNTHLRSVKLTSKNKEPINLDTFTIRG 183
           L+  L  L  +  T+++++ ++  G +  VD  MN  L +V  T +    + LD   + G
Sbjct: 17  LIILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTG 76

Query: 184 NNIRYFILPE 213
            N+RY  +P+
Sbjct: 77  RNVRYVHIPD 86
>sp|Q9Y333|LSM2_HUMAN U6 snRNA-associated Sm-like protein LSm2 (SnRNP core Sm-like
           protein Sm-x5) (G7b protein) (Small nuclear ribonuclear
           protein D homolog)
 sp|O35900|LSM2_MOUSE U6 snRNA-associated Sm-like protein LSm2 (SnRNP core Sm-like
           protein Sm-x5) (G7b protein)
          Length = 95

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +1

Query: 13  FLMRLSHETVTIEMKNGTIVHGTVAGVDMAMNTHLRSVKLTSKNKEP--INLDTFTIRGN 186
           F   L  + V +E+KN   + GT+  VD  +N  L  + +T   K P  +++    IRG+
Sbjct: 6   FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGS 65

Query: 187 NIRYFILPETLPLDTMLIDDTPK 255
            +RY  LP    +DT L+ D  +
Sbjct: 66  VVRYVQLPAD-EVDTQLLQDAAR 87
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,540,245
Number of Sequences: 369166
Number of extensions: 777821
Number of successful extensions: 1704
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1700
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3119256630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00408

  1. Dr_sW_003_B02
  2. Dr_sW_011_M18
  3. Dr_sW_011_J17
  4. Dr_sW_011_B14