Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_P16
(533 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 267 1e-71
sp|P41937|TBB4_CAEEL Tubulin beta-4 chain (Beta-4 tubulin) 267 1e-71
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 267 1e-71
sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin cla... 267 1e-71
sp|P02554|TBB_PIG Tubulin beta chain 267 1e-71
sp|P61858|TBB2_DROHY Tubulin beta-2 chain (Beta-2 tubulin) ... 267 1e-71
sp|P83130|TBB2_DROER Tubulin beta-2 chain (Beta-2 tubulin) 267 1e-71
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 267 1e-71
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 267 1e-71
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 267 1e-71
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 267 bits (682), Expect = 1e-71
Identities = 133/156 (85%), Positives = 135/156 (86%)
Frame = +2
Query: 65 LAGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSV 244
L GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSV
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSV 189
Query: 245 HQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 424
HQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD
Sbjct: 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
Query: 425 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 532
LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 250 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Score = 47.4 bits (111), Expect = 2e-05
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 3 GAELVDSVLDIVRKEAESCDCLR 71
GAELVDSVLD+VRKEAESCDCL+
Sbjct: 109 GAELVDSVLDVVRKEAESCDCLQ 131
>sp|P41937|TBB4_CAEEL Tubulin beta-4 chain (Beta-4 tubulin)
Length = 444
Score = 267 bits (682), Expect = 1e-71
Identities = 132/156 (84%), Positives = 135/156 (86%)
Frame = +2
Query: 65 LAGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSV 244
L GFQ KIREEYPDR+M+TFSVVPSPKVSDTVVEPYNATLSV
Sbjct: 130 LQGFQMTHSLGGGTGSGMGTLLISKIREEYPDRIMMTFSVVPSPKVSDTVVEPYNATLSV 189
Query: 245 HQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 424
HQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVS TMSGVTTCLRFPGQLNAD
Sbjct: 190 HQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSMTMSGVTTCLRFPGQLNAD 249
Query: 425 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 532
LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYR+LT
Sbjct: 250 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLT 285
Score = 46.2 bits (108), Expect = 5e-05
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +3
Query: 3 GAELVDSVLDIVRKEAESCDCLR 71
GAELVD+VLD+VRKEAESCDCL+
Sbjct: 109 GAELVDNVLDVVRKEAESCDCLQ 131
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 267 bits (682), Expect = 1e-71
Identities = 133/156 (85%), Positives = 135/156 (86%)
Frame = +2
Query: 65 LAGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSV 244
L GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSV
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSV 189
Query: 245 HQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 424
HQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD
Sbjct: 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
Query: 425 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 532
LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 250 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Score = 47.4 bits (111), Expect = 2e-05
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 3 GAELVDSVLDIVRKEAESCDCLR 71
GAELVDSVLD+VRKEAESCDCL+
Sbjct: 109 GAELVDSVLDVVRKEAESCDCLQ 131
>sp|P09206|TBB3_CHICK Tubulin beta-3 chain (Beta-tubulin class-IV)
Length = 445
Score = 267 bits (682), Expect = 1e-71
Identities = 133/156 (85%), Positives = 135/156 (86%)
Frame = +2
Query: 65 LAGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSV 244
L GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSV
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSV 189
Query: 245 HQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 424
HQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD
Sbjct: 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
Query: 425 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 532
LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 250 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Score = 47.4 bits (111), Expect = 2e-05
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 3 GAELVDSVLDIVRKEAESCDCLR 71
GAELVDSVLD+VRKEAESCDCL+
Sbjct: 109 GAELVDSVLDVVRKEAESCDCLQ 131
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 267 bits (682), Expect = 1e-71
Identities = 133/156 (85%), Positives = 135/156 (86%)
Frame = +2
Query: 65 LAGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSV 244
L GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSV
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSV 189
Query: 245 HQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 424
HQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD
Sbjct: 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
Query: 425 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 532
LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 250 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Score = 46.2 bits (108), Expect = 5e-05
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +3
Query: 3 GAELVDSVLDIVRKEAESCDCLR 71
GAELVDSVLD+VRKE+ESCDCL+
Sbjct: 109 GAELVDSVLDVVRKESESCDCLQ 131
>sp|P61858|TBB2_DROHY Tubulin beta-2 chain (Beta-2 tubulin)
sp|P61857|TBB2_DROME Tubulin beta-2 chain (Beta-2 tubulin)
Length = 446
Score = 267 bits (682), Expect = 1e-71
Identities = 133/156 (85%), Positives = 135/156 (86%)
Frame = +2
Query: 65 LAGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSV 244
L GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSV
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSV 189
Query: 245 HQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 424
HQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD
Sbjct: 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
Query: 425 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 532
LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 250 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Score = 44.7 bits (104), Expect = 1e-04
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +3
Query: 3 GAELVDSVLDIVRKEAESCDCLR 71
GAELVDSVLD+VRKE+E CDCL+
Sbjct: 109 GAELVDSVLDVVRKESEGCDCLQ 131
>sp|P83130|TBB2_DROER Tubulin beta-2 chain (Beta-2 tubulin)
Length = 446
Score = 267 bits (682), Expect = 1e-71
Identities = 133/156 (85%), Positives = 135/156 (86%)
Frame = +2
Query: 65 LAGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSV 244
L GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSV
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSV 189
Query: 245 HQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 424
HQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD
Sbjct: 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
Query: 425 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 532
LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 250 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Score = 44.7 bits (104), Expect = 1e-04
Identities = 19/23 (82%), Positives = 22/23 (95%)
Frame = +3
Query: 3 GAELVDSVLDIVRKEAESCDCLR 71
GAELVDSVLD+VRKE+E CDCL+
Sbjct: 109 GAELVDSVLDVVRKESEGCDCLQ 131
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 267 bits (682), Expect = 1e-71
Identities = 133/156 (85%), Positives = 135/156 (86%)
Frame = +2
Query: 65 LAGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSV 244
L GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSV
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSV 189
Query: 245 HQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 424
HQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD
Sbjct: 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
Query: 425 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 532
LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 250 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Score = 47.4 bits (111), Expect = 2e-05
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 3 GAELVDSVLDIVRKEAESCDCLR 71
GAELVDSVLD+VRKEAESCDCL+
Sbjct: 109 GAELVDSVLDVVRKEAESCDCLQ 131
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 267 bits (682), Expect = 1e-71
Identities = 133/156 (85%), Positives = 135/156 (86%)
Frame = +2
Query: 65 LAGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSV 244
L GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSV
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSV 189
Query: 245 HQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 424
HQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD
Sbjct: 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
Query: 425 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 532
LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 250 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Score = 47.4 bits (111), Expect = 2e-05
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 3 GAELVDSVLDIVRKEAESCDCLR 71
GAELVDSVLD+VRKEAESCDCL+
Sbjct: 109 GAELVDSVLDVVRKEAESCDCLQ 131
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 267 bits (682), Expect = 1e-71
Identities = 133/156 (85%), Positives = 135/156 (86%)
Frame = +2
Query: 65 LAGFQXXXXXXXXXXXXXXXXXXXKIREEYPDRVMLTFSVVPSPKVSDTVVEPYNATLSV 244
L GFQ KIREEYPDR+M TFSVVPSPKVSDTVVEPYNATLSV
Sbjct: 130 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSV 189
Query: 245 HQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 424
HQLVENTDET+CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD
Sbjct: 190 HQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNAD 249
Query: 425 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 532
LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT
Sbjct: 250 LRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALT 285
Score = 47.4 bits (111), Expect = 2e-05
Identities = 21/23 (91%), Positives = 23/23 (100%)
Frame = +3
Query: 3 GAELVDSVLDIVRKEAESCDCLR 71
GAELVDSVLD+VRKEAESCDCL+
Sbjct: 109 GAELVDSVLDVVRKEAESCDCLQ 131
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,955,205
Number of Sequences: 369166
Number of extensions: 948708
Number of successful extensions: 2753
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2722
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3650218350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)