Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_P11-1
(311 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9JI13|SAS10_MOUSE Something about silencing protein 10 ... 73 2e-13
sp|Q9NQZ2|SAS10_HUMAN Something about silencing protein 10 ... 72 3e-13
sp|Q6AXX4|SAS10_RAT Something about silencing protein 10 (D... 72 4e-13
sp|Q12136|SAS10_YEAST Something about silencing protein 10 ... 55 5e-08
sp|P21339|MSB1_YEAST Morphogenesis-related protein MSB1 (Mu... 28 8.6
sp|P19768|INSJ_ECOLI Insertion element IS150 hypothetical 1... 28 8.6
>sp|Q9JI13|SAS10_MOUSE Something about silencing protein 10 (Disrupter of silencing SAS10)
(Charged amino acid-rich leucine zipper 1) (Crl-1)
Length = 469
Score = 73.2 bits (178), Expect = 2e-13
Identities = 37/71 (52%), Positives = 46/71 (64%)
Frame = -1
Query: 230 RPVSKRIMDNKGLVPRRKKADANPRVKHRMKFKKAIVKYHSNVPRNRDDTGNYEGEQSGI 51
R ++ +I N+GL PRRKK D NPRVKHR KF+KA ++ V R + Y GE SGI
Sbjct: 399 RAITYQIAKNRGLTPRRKKIDRNPRVKHREKFRKAKIRRRGQVREVRREEQRYSGELSGI 458
Query: 50 RIGVIKSNKIK 18
R GV KS K+K
Sbjct: 459 RAGVKKSIKLK 469
>sp|Q9NQZ2|SAS10_HUMAN Something about silencing protein 10 (Disrupter of silencing SAS10)
(Charged amino acid-rich leucine zipper 1)
Length = 479
Score = 72.4 bits (176), Expect = 3e-13
Identities = 36/71 (50%), Positives = 46/71 (64%)
Frame = -1
Query: 230 RPVSKRIMDNKGLVPRRKKADANPRVKHRMKFKKAIVKYHSNVPRNRDDTGNYEGEQSGI 51
R ++ +I N+GL PRRKK D NPRVKHR KF++A ++ V R + Y GE SGI
Sbjct: 409 RAITYQIAKNRGLTPRRKKIDRNPRVKHREKFRRAKIRRRGQVREVRKEEQRYSGELSGI 468
Query: 50 RIGVIKSNKIK 18
R GV KS K+K
Sbjct: 469 RAGVKKSIKLK 479
>sp|Q6AXX4|SAS10_RAT Something about silencing protein 10 (Disrupter of silencing SAS10)
(Charged amino acid-rich leucine zipper 1)
Length = 470
Score = 72.0 bits (175), Expect = 4e-13
Identities = 36/71 (50%), Positives = 46/71 (64%)
Frame = -1
Query: 230 RPVSKRIMDNKGLVPRRKKADANPRVKHRMKFKKAIVKYHSNVPRNRDDTGNYEGEQSGI 51
R ++ +I N+GL PRRKK D NPRVKHR KF++A ++ V R + Y GE SGI
Sbjct: 400 RAITYQIAKNRGLTPRRKKIDRNPRVKHREKFRRAKIRRRGQVREVRREEQRYSGELSGI 459
Query: 50 RIGVIKSNKIK 18
R GV KS K+K
Sbjct: 460 RAGVKKSIKLK 470
>sp|Q12136|SAS10_YEAST Something about silencing protein 10 (U3 small nucleolar
RNA-associated protein 3) (U3 snoRNA-associated protein
11)
Length = 610
Score = 55.1 bits (131), Expect = 5e-08
Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Frame = -1
Query: 230 RPVSKRIMDNKGLVPRRKKADANPRVKHRMKFKKAIVKYHS-NVPRNRDDTGNYEGEQSG 54
R ++ +I+ NKGL P+R K + N RVK R K++KA K S + +G YEGE++G
Sbjct: 538 RAINYQILKNKGLTPKRNKDNRNSRVKKRKKYQKAQKKLKSVRAVYSGGQSGVYEGEKTG 597
Query: 53 IRIGVIKSNKIK 18
I+ G+ +S K K
Sbjct: 598 IKKGLTRSVKFK 609
>sp|P21339|MSB1_YEAST Morphogenesis-related protein MSB1 (Multicopy suppressor of bud
emergence 1)
Length = 1137
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 230 RPVSKRIMDNKGLVPRRKKADANPRVKHRMKFKKAIVKYHSNVP 99
RP I+ + L R ++ADA+P +H + K+ + SNVP
Sbjct: 917 RPFQNNIVPPE-LKSRNQRADASPIPQHMVPVKQGVPNLPSNVP 959
>sp|P19768|INSJ_ECOLI Insertion element IS150 hypothetical 19.7 kDa protein (ORFA)
sp|P60046|INSJ_SHIFL Insertion element IS150 hypothetical 19.7 kDa protein
Length = 173
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = -1
Query: 200 KGLVPRRKKADANPRVKHRMKFKKAIVKYHSNV 102
KGL+P+ K A+P + R+K KA+++ H ++
Sbjct: 52 KGLIPKPKGVSADPEL--RIKVVKAVIEQHMSL 82
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,544,179
Number of Sequences: 369166
Number of extensions: 433344
Number of successful extensions: 1042
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)