Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_P08
(723 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P37642|YHJD_ECOLI Inner membrane protein yhjD 30 6.5
sp|Q8JIY1|ADA10_XENLA ADAM 10 precursor (A disintegrin and ... 30 8.5
>sp|P37642|YHJD_ECOLI Inner membrane protein yhjD
Length = 337
Score = 30.0 bits (66), Expect = 6.5
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 426 RLEMQYKISRNYFYFLFVIPILIVVCLAALCYRLKHPHIVARETDIVLKN 575
RL Q+ + YF FL +IPIL+V A HP ++ D +L+N
Sbjct: 64 RLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPMLLQDIFDKILQN 113
>sp|Q8JIY1|ADA10_XENLA ADAM 10 precursor (A disintegrin and metalloproteinase domain 10)
(Kuzbanian protein homolog) (xKuz)
Length = 749
Score = 29.6 bits (65), Expect = 8.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +3
Query: 273 SVSSVFSNSENPCFNENTTFMSKTETYGNGSCDPGKPDKYQFVNSCQDE 419
++S V EN CF E S GNG +PG+ + + C+DE
Sbjct: 440 NISQVLDKKENSCFVE-----SGQPICGNGLVEPGEQCDCGYSDQCKDE 483
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,512,912
Number of Sequences: 369166
Number of extensions: 1608238
Number of successful extensions: 4168
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4168
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6462248555
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)