Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_P05
(405 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UN30|SCML1_HUMAN Sex comb on midleg-like protein 1 31 0.82
sp|P39770|SALM_DROME Homeotic protein spalt-major 30 1.8
sp|Q6DE87|CHK1_XENLA Serine/threonine-protein kinase Chk1 (... 30 2.4
sp|P36334|SPIKE_CVHOC Spike glycoprotein precursor (Peplome... 29 3.1
sp|Q8VSL2|SEPA_SHIFL Serine protease sepA precursor 28 5.3
sp|Q84GK0|EATA_ECOLI Serine protease eatA precursor (Secret... 28 5.3
sp|P49380|PMA1_KLULA Plasma membrane ATPase (Proton pump) 28 7.0
sp|Q8R4U0|STAB2_MOUSE Stabilin-2 precursor [Contains: Short... 28 7.0
sp|Q91876|MCM7_XENLA DNA replication licensing factor MCM7 ... 28 7.0
sp|Q9UIS9|MBD1_HUMAN Methyl-CpG-binding domain protein 1 (M... 28 9.1
>sp|Q9UN30|SCML1_HUMAN Sex comb on midleg-like protein 1
Length = 208
Score = 31.2 bits (69), Expect = 0.82
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 63 EIDPTLGNVENPFANRDFNVYTCLDKYNNEGINQGFICNFCCGN 194
E DP L +P DF+ + C Y ++G G C GN
Sbjct: 49 EEDPILSRTPSPVHPSDFSEHNCQPYYASDGATYGSSSGLCLGN 92
>sp|P39770|SALM_DROME Homeotic protein spalt-major
Length = 1365
Score = 30.0 bits (66), Expect = 1.8
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 9/54 (16%)
Frame = +3
Query: 150 EGINQGFICNFCCGNYNFGPEHGH---------RMRCRQCGRVAYSDIEARIYV 284
+ +QG + N ++ FG + G + RCR CG+V SD +I++
Sbjct: 417 DSASQGILANSMADDFAFGEKSGEGKGRNEPFFKHRCRYCGKVFGSDSALQIHI 470
>sp|Q6DE87|CHK1_XENLA Serine/threonine-protein kinase Chk1 (xChk1 protein)
Length = 474
Score = 29.6 bits (65), Expect = 2.4
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -1
Query: 261 LNRQLVHTDDISFYVHVRDQNCSFHNRNCI*ILDLFLHYC 142
+NR L HT+ + FY H R+ N + LFL YC
Sbjct: 58 INRMLSHTNIVRFYGHRREGNIQY----------LFLEYC 87
>sp|P36334|SPIKE_CVHOC Spike glycoprotein precursor (Peplomer protein) (E2) [Contains:
Spike protein S1 (90B); Spike protein S2 (90A)]
Length = 1353
Score = 29.3 bits (64), Expect = 3.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 27 ICTYNGPRFPNPEIDPTLGNVENPFANRDFNVYTCLDKYN 146
+C YN +P P LGN + D V +CL K N
Sbjct: 163 VCQYNMCEYPQTICHPNLGNHRKELWHLDTGVVSCLYKRN 202
>sp|Q8VSL2|SEPA_SHIFL Serine protease sepA precursor
Length = 1364
Score = 28.5 bits (62), Expect = 5.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 86 ITKSWINFGIWKSWSIIGANWFITTRHF 3
+ K W+ G+ S + G NW +TT+ F
Sbjct: 277 LQKKWVLIGVLSSGTNYGNNWVVTTQDF 304
>sp|Q84GK0|EATA_ECOLI Serine protease eatA precursor (Secreted autotransporter protein
eatA) (ETEC autotransporter A)
Length = 1364
Score = 28.5 bits (62), Expect = 5.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 86 ITKSWINFGIWKSWSIIGANWFITTRHF 3
+ K W+ G+ S S G NW +TT+ F
Sbjct: 277 LDKKWVLVGVLSSGSEHGNNWVVTTQDF 304
>sp|P49380|PMA1_KLULA Plasma membrane ATPase (Proton pump)
Length = 899
Score = 28.1 bits (61), Expect = 7.0
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -2
Query: 161 IYSFIIVFIKTSINIEISIGKWIFYITKS 75
+YS+++ I S+++EI +G WI + +S
Sbjct: 669 MYSYVVYRIALSLHLEIFLGLWIAILNRS 697
>sp|Q8R4U0|STAB2_MOUSE Stabilin-2 precursor [Contains: Short form stabilin-2]
Length = 2559
Score = 28.1 bits (61), Expect = 7.0
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 10/87 (11%)
Frame = +3
Query: 3 KMSCSNKPICTYNGPR----FPNPEIDPTLGNVENPFANRDFNVYTCLDKYNNEGIN--- 161
K+ C+ T PR F P+ +P G NP + C+D G
Sbjct: 719 KIGCARYCDVTVEIPRCCKGFFGPDCNPCPGGFMNPCSGNG----QCIDGLGGNGTCICE 774
Query: 162 ---QGFICNFCCGNYNFGPEHGHRMRC 233
QG C FC +GP+ +C
Sbjct: 775 DGFQGSRCQFCSKPNRYGPQCNRTCQC 801
>sp|Q91876|MCM7_XENLA DNA replication licensing factor MCM7 (CDC47 homolog) (x.MCM7)
Length = 720
Score = 28.1 bits (61), Expect = 7.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 291 DRQHKFLPQYLNRQLVHTDDISFYVHVR 208
D + LPQY R++VH D + Y+ R
Sbjct: 78 DAVQELLPQYKEREVVHKDALDVYIEHR 105
>sp|Q9UIS9|MBD1_HUMAN Methyl-CpG-binding domain protein 1 (Methyl-CpG binding protein
MBD1) (Protein containing methyl-CpG-binding domain 1)
Length = 605
Score = 27.7 bits (60), Expect = 9.1
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +3
Query: 174 CNFCCGNYNFGPEHGHRMRC--RQC 242
C+FCC FG + R +C RQC
Sbjct: 353 CDFCCDKPKFGGSNQKRQKCRWRQC 377
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,840,675
Number of Sequences: 369166
Number of extensions: 942274
Number of successful extensions: 2397
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2397
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)